RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	VPS5	Q92331	675 aa		6.25	□□□□□ -1.41
RPT3	YDR394W	CHS1	P08004	1131 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	IMA3	P0CW40	589 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	IMA4	P0CW41	589 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	RNA1	P11745	407 aa	Known RBP	6.24	□□□□□ -1.41
RPT3	YDR394W	VBA3	P25594	458 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	MEI4	P29467	408 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	MRE11	P32829	692 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	BCS1	P32839	456 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	VBA5	P36172	582 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	YBR032W	P38223	100 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	HSM3	P38348	480 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	LYS9	P38999	446 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	YIL054W	P40524	105 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	NEO1	P40527	1151 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	RTA1	P53047	317 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	PCL10	P53124	433 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	ALG11	P53954	548 aa	Known RBP	6.24	□□□□□ -1.41
RPT3	YDR394W	GTR1	Q00582	310 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	SLT2	Q00772	484 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	CWC21	Q03375	135 aa	Known RBP	6.24	□□□□□ -1.41
RPT3	YDR394W	MZM1	Q03429	123 aa	Predicted RBP	6.24	□□□□□ -1.41
RPT3	YDR394W	HAS1	Q03532	505 aa	Known RBP	6.24	□□□□□ -1.41
RPT3	YDR394W	SPO71	Q03868	1245 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	DOT1	Q04089	582 aa	Known RBP	6.24	□□□□□ -1.41
RPT3	YDR394W	SHE9	Q04172	456 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	FMP25	Q08023	583 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	IMA2	Q08295	589 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	ATG11	Q12527	1178 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	FRT1	Q99332	602 aa		6.24	□□□□□ -1.41
RPT3	YDR394W	GLT1	Q12680	2145 aa	Known RBP	6.23	□□□□□ -1.41
RPT3	YDR394W	GAL11	P19659	1081 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	ADE2	P21264	571 aa	Known RBP	6.23	□□□□□ -1.41
RPT3	YDR394W	SAT4	P25333	603 aa	Known RBP	6.23	□□□□□ -1.41
RPT3	YDR394W	RAD5	P32849	1169 aa	Predicted RBP	6.23	□□□□□ -1.41
RPT3	YDR394W	SRB2	P34162	210 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	MOT2	P34909	587 aa	Known RBP	6.23	□□□□□ -1.41
RPT3	YDR394W	YAP1801	P38856	637 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	FLC2	P39719	783 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	GEM1	P39722	662 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	SAW1	P39735	261 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	YER186C	P40101	306 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	TMA22	P47089	198 aa	Predicted RBP	6.23	□□□□□ -1.41
RPT3	YDR394W	LIA1	P47120	325 aa	Known RBP	6.23	□□□□□ -1.41
RPT3	YDR394W	RSM26	P47141	266 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	TAF6	P53040	516 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	MAG2	Q06436	670 aa	Known RBP	6.23	□□□□□ -1.41
RPT3	YDR394W	YDL073W	Q07454	984 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	REC8	Q12188	680 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	EMP46	Q12396	444 aa		6.23	□□□□□ -1.41
RPT3	YDR394W	PRP4	P20053	465 aa	Known RBP	6.22	□□□□□ -1.41
RPT3	YDR394W	URA7	P28274	579 aa	Known RBP	6.22	□□□□□ -1.41
RPT3	YDR394W	DUR3	P33413	735 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	PAM1	P37304	830 aa	Known RBP	6.22	□□□□□ -1.41
RPT3	YDR394W	DIA4	P38705	446 aa	Predicted RBP	6.22	□□□□□ -1.41
RPT3	YDR394W	SMF2	P38778	549 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	LIN1	P38852	340 aa	Predicted RBP	6.22	□□□□□ -1.41
RPT3	YDR394W	CKB2	P38930	258 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	DSE1	P40077	573 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	SCC4	P40090	624 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	MND2	P40577	368 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	YNL011C	P53980	444 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	YLR225C	Q05948	407 aa	Known RBP	6.22	□□□□□ -1.41
RPT3	YDR394W	DIS3	Q08162	1001 aa	Known RBP	6.22	□□□□□ -1.41
RPT3	YDR394W	MDM38	Q08179	573 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	APC5	Q08683	685 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	ICL2	Q12031	575 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	YLL056C	Q12177	298 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	GPM3	Q12326	303 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	CTF3	Q12748	733 aa		6.22	□□□□□ -1.41
RPT3	YDR394W	SSC1	P0CS90	654 aa	Known RBP	6.21	□□□□□ -1.42
RPT3	YDR394W	ERS1	P17261	260 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	BAS1	P22035	811 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	CYS3	P31373	394 aa	Known RBP	6.21	□□□□□ -1.42
RPT3	YDR394W	MVD1	P32377	396 aa	Known RBP	6.21	□□□□□ -1.42
RPT3	YDR394W	MAE1	P36013	669 aa	Known RBP	6.21	□□□□□ -1.42
RPT3	YDR394W	ABZ1	P37254	787 aa	Predicted RBP	6.21	□□□□□ -1.42
RPT3	YDR394W	RPT2	P40327	437 aa	Known RBP	6.21	□□□□□ -1.42
RPT3	YDR394W	MKT1	P40850	830 aa	Known RBP	6.21	□□□□□ -1.42
RPT3	YDR394W	LAM5	P43560	674 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	ILM1	P47155	203 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	RFX1	P48743	811 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	YPR003C	P53394	754 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	6.21	□□□□□ -1.42	not detected
RPT3	YDR394W	YNL134C	P53912	376 aa	Known RBP	6.21	□□□□□ -1.42
RPT3	YDR394W	ADI1	Q03677	179 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	TIF35	Q04067	274 aa	Known RBP	6.21	□□□□□ -1.42
RPT3	YDR394W	ADE13	Q05911	482 aa	Known RBP	6.21	□□□□□ -1.42
RPT3	YDR394W	NUT2	Q06213	157 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	CDD1	Q06549	142 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	TPO1	Q07824	586 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	CUE5	Q08412	411 aa	Known RBP	6.21	□□□□□ -1.42
RPT3	YDR394W	THI21	Q08975	551 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	VPS54	Q12071	889 aa		6.21	□□□□□ -1.42
RPT3	YDR394W	GPA2	P10823	449 aa		6.2	□□□□□ -1.42
RPT3	YDR394W	YCR015C	P25616	317 aa		6.2	□□□□□ -1.42
RPT3	YDR394W	COQ2	P32378	372 aa		6.2	□□□□□ -1.42
RPT3	YDR394W	COY1	P34237	679 aa		6.2	□□□□□ -1.42
RPT3	YDR394W	ETR1	P38071	380 aa		6.2	□□□□□ -1.42
RPT3	YDR394W	AGP2	P38090	596 aa		6.2	□□□□□ -1.42

Retrieved 100 of 5,963 RNA–protein pairs in 48.7 ms