Protein–RNA interactions for Protein: P48743

RFX1, RFX-like DNA-binding protein RFX1, yeastyeast

Predictions only

Length 811 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RFX1P48743 YML009W-BYML009W-B 477 nt21.09■□□□□ 0.97
RFX1P48743 NSR1YGR159C 1245 nt21■□□□□ 0.95
RFX1P48743 NOP1YDL014W 984 nt20.47■□□□□ 0.87
RFX1P48743 YKL036CYKL036C 393 nt18.82■□□□□ 0.6
RFX1P48743 MDJ1YFL016C 1536 nt18.73■□□□□ 0.59
RFX1P48743 SRX1YKL086W 384 nt17.88■□□□□ 0.45
RFX1P48743 Q0297Q0297 156 nt17.87■□□□□ 0.45
RFX1P48743 YJL027CYJL027C 417 nt17.58■□□□□ 0.4
RFX1P48743 SCS3YGL126W 1143 nt17.08■□□□□ 0.32
RFX1P48743 YCR051WYCR051W 669 nt16.99■□□□□ 0.31
RFX1P48743 DBP2YNL112W 1641 nt16.51■□□□□ 0.23
RFX1P48743 YOL085CYOL085C 342 nt16.3■□□□□ 0.2
RFX1P48743 TRN1tP(UGG)A 72 nt16.19■□□□□ 0.18
RFX1P48743 SUF9tP(UGG)F 72 nt16.19■□□□□ 0.18
RFX1P48743 SUF8tP(UGG)H 72 nt16.19■□□□□ 0.18
RFX1P48743 tP(UGG)LtP(UGG)L 72 nt16.19■□□□□ 0.18
RFX1P48743 SUF7tP(UGG)M 72 nt16.19■□□□□ 0.18
RFX1P48743 tP(UGG)N1tP(UGG)N1 72 nt16.19■□□□□ 0.18
RFX1P48743 tP(UGG)N2tP(UGG)N2 72 nt16.19■□□□□ 0.18
RFX1P48743 tP(UGG)O1tP(UGG)O1 72 nt16.19■□□□□ 0.18
RFX1P48743 SUF11tP(UGG)O2 72 nt16.19■□□□□ 0.18
RFX1P48743 PKP1YIL042C 1185 nt16.09■□□□□ 0.17
RFX1P48743 CCC1YLR220W 969 nt16.09■□□□□ 0.17
RFX1P48743 RPP1BYDL130W 321 nt16.04■□□□□ 0.16
RFX1P48743 YBR190WYBR190W 312 nt15.97■□□□□ 0.15
RFX1P48743 RTC3YHR087W 336 nt15.67■□□□□ 0.1
RFX1P48743 RVS167YDR388W 1449 nt15.55■□□□□ 0.08
RFX1P48743 SCJ1YMR214W 1134 nt15.42■□□□□ 0.06
RFX1P48743 PET122YER153C 765 nt15.34■□□□□ 0.05
RFX1P48743 tP(UGG)O3tP(UGG)O3 72 nt15.31■□□□□ 0.04
RFX1P48743 ATS1YAL020C 1002 nt15.26■□□□□ 0.03
RFX1P48743 SCR1SCR1 522 nt15.18■□□□□ 0.02
RFX1P48743 SSA3YBL075C 1950 nt15.07■□□□□ 0
RFX1P48743 SHR5YOL110W 714 nt14.96□□□□□ -0.01
RFX1P48743 RRN5YLR141W 1092 nt14.91□□□□□ -0.02
RFX1P48743 YDJ1YNL064C 1230 nt14.8□□□□□ -0.04
RFX1P48743 URN1YPR152C 1398 nt14.6□□□□□ -0.07
RFX1P48743 YER088W-BYER088W-B 147 nt14.6□□□□□ -0.07
RFX1P48743 DEP1YAL013W 1218 nt14.6□□□□□ -0.07
RFX1P48743 RSB1YOR049C 1065 nt14.59□□□□□ -0.07
RFX1P48743 PUT4YOR348C 1884 nt14.54□□□□□ -0.08
RFX1P48743 GAR1YHR089C 618 nt14.52□□□□□ -0.09
RFX1P48743 OPI9YLR338W 858 nt14.4□□□□□ -0.1
RFX1P48743 RPN10YHR200W 807 nt14.37□□□□□ -0.11
RFX1P48743 YNL208WYNL208W 600 nt14.34□□□□□ -0.11
RFX1P48743 SAH1YER043C 1350 nt14.34□□□□□ -0.11
RFX1P48743 ARE1YCR048W 1833 nt14.26□□□□□ -0.13
RFX1P48743 PST2YDR032C 597 nt14.14□□□□□ -0.15
RFX1P48743 POA1YBR022W 534 nt14.12□□□□□ -0.15
RFX1P48743 YHR049C-AYHR049C-A 297 nt14.09□□□□□ -0.15
RFX1P48743 TIR1YER011W 765 nt14.02□□□□□ -0.17
RFX1P48743 PUN1YLR414C 792 nt13.98□□□□□ -0.17
RFX1P48743 YJR018WYJR018W 363 nt13.93□□□□□ -0.18
RFX1P48743 SSA1YAL005C 1929 nt13.86□□□□□ -0.19
RFX1P48743 PTC2YER089C 1395 nt13.84□□□□□ -0.19
RFX1P48743 BSC6YOL137W 1494 nt13.8□□□□□ -0.2
RFX1P48743 BUD23YCR047C 828 nt13.8□□□□□ -0.2
RFX1P48743 YJR120WYJR120W 351 nt13.67□□□□□ -0.22
RFX1P48743 NAB2YGL122C 1578 nt13.66□□□□□ -0.22
RFX1P48743 RPP2BYDR382W 333 nt13.64□□□□□ -0.23
RFX1P48743 SRB2YHR041C 633 nt13.6□□□□□ -0.23
RFX1P48743 SHU1YHL006C 453 nt13.59□□□□□ -0.23
RFX1P48743 YKL097CYKL097C 411 nt13.55□□□□□ -0.24
RFX1P48743 FPR4YLR449W 1179 nt13.48□□□□□ -0.25
RFX1P48743 DAL1YIR027C 1383 nt13.46□□□□□ -0.25
RFX1P48743 INM2YDR287W 879 nt13.45□□□□□ -0.26
RFX1P48743 FIS1YIL065C 468 nt13.43□□□□□ -0.26
RFX1P48743 YAL037C-BYAL037C-B 975 nt13.43□□□□□ -0.26
RFX1P48743 WWM1YFL010C 636 nt13.39□□□□□ -0.27
RFX1P48743 BDH2YAL061W 1254 nt13.34□□□□□ -0.27
RFX1P48743 SPT5YML010W 3192 nt13.33□□□□□ -0.28
RFX1P48743 PHO4YFR034C 939 nt13.32□□□□□ -0.28
RFX1P48743 YBL100CYBL100C 315 nt13.3□□□□□ -0.28
RFX1P48743 YGR021WYGR021W 873 nt13.27□□□□□ -0.29
RFX1P48743 SSA4YER103W 1929 nt13.24□□□□□ -0.29
RFX1P48743 HOM6YJR139C 1080 nt13.22□□□□□ -0.29
RFX1P48743 YFL021C-AYFL021C-A 855 nt13.16□□□□□ -0.3
RFX1P48743 MNP1YGL068W 585 nt13.16□□□□□ -0.3
RFX1P48743 LSM3YLR438C-A 270 nt13.16□□□□□ -0.3
RFX1P48743 FUN26YAL022C 1554 nt13.15□□□□□ -0.3
RFX1P48743 TRM9YML014W 840 nt13.13□□□□□ -0.31
RFX1P48743 YPS1YLR120C 1710 nt13.09□□□□□ -0.31
RFX1P48743 RKM5YLR137W 1104 nt13.03□□□□□ -0.32
RFX1P48743 YOR139CYOR139C 393 nt13.01□□□□□ -0.33
RFX1P48743 YDR095CYDR095C 411 nt12.99□□□□□ -0.33
RFX1P48743 ALF1YNL148C 765 nt12.99□□□□□ -0.33
RFX1P48743 YHR165W-AYHR165W-A 312 nt12.98□□□□□ -0.33
RFX1P48743 CCT6YDR188W 1641 nt12.95□□□□□ -0.34
RFX1P48743 MEP2YNL142W 1500 nt12.95□□□□□ -0.34
RFX1P48743 NPL3YDR432W 1245 nt12.94□□□□□ -0.34
RFX1P48743 YOL037CYOL037C 354 nt12.9□□□□□ -0.34
RFX1P48743 SUF2tP(AGG)C 72 nt12.87□□□□□ -0.35
RFX1P48743 SUF10tP(AGG)N 72 nt12.87□□□□□ -0.35
RFX1P48743 BDF1YLR399C 2061 nt12.84□□□□□ -0.35
RFX1P48743 RPP2AYOL039W 321 nt12.77□□□□□ -0.37
RFX1P48743 SIS1YNL007C 1059 nt12.76□□□□□ -0.37
RFX1P48743 DCW1YKL046C 1350 nt12.76□□□□□ -0.37
RFX1P48743 PTP1YDL230W 1008 nt12.7□□□□□ -0.38
RFX1P48743 TAT1YBR069C 1860 nt12.64□□□□□ -0.39
RFX1P48743 CAC2YML102W 1407 nt12.62□□□□□ -0.39
Retrieved 100 of 7,029 protein–RNA pairs in 13.9 ms