RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 TRRAPQ9Y4A5 3859 aa1.59□□□□□ -2.15
SLIRP-208ENST00000556956 A0A1B0GU33 70 aa1.59□□□□□ -2.15
SLIRP-208ENST00000556956 SPINK1P00995 79 aa1.59□□□□□ -2.15
SLIRP-208ENST00000556956 ROMO1P60602 79 aa1.59□□□□□ -2.15
SLIRP-208ENST00000556956 NIPBLQ6KC79 2804 aaeCLIP1.58□□□□□ -2.16
SLIRP-208ENST00000556956 H1FX-AS1Q4G0G2 97 aa1.58□□□□□ -2.16
SLIRP-208ENST00000556956 Q6ZSA8 131 aa1.58□□□□□ -2.16
SLIRP-208ENST00000556956 LINC00304Q8N9R0 145 aa1.58□□□□□ -2.16
SLIRP-208ENST00000556956 STAB1Q9NY15 2570 aa1.58□□□□□ -2.16
SLIRP-208ENST00000556956 FLNBO75369 2602 aaKnown RBP1.57□□□□□ -2.16
SLIRP-208ENST00000556956 H0YAA0 97 aa1.57□□□□□ -2.16
SLIRP-208ENST00000556956 TYMSOSQ8TAI1 123 aa1.57□□□□□ -2.16
SLIRP-208ENST00000556956 NBEAL2Q6ZNJ1 2754 aa1.56□□□□□ -2.16
SLIRP-208ENST00000556956 KRTAP13-2Q52LG2 175 aa1.56□□□□□ -2.16
SLIRP-208ENST00000556956 TENM3Q9P273 2699 aa1.55□□□□□ -2.16
SLIRP-208ENST00000556956 PKD1L1Q8TDX9 2849 aa1.55□□□□□ -2.16
SLIRP-208ENST00000556956 FBN1P35555 2871 aaKnown RBP1.55□□□□□ -2.16
SLIRP-208ENST00000556956 RPS29P62273 56 aaKnown RBP1.55□□□□□ -2.16
SLIRP-208ENST00000556956 SPINT4Q6UDR6 99 aa1.54□□□□□ -2.16
SLIRP-208ENST00000556956 COL6A5A8TX70 2615 aa1.54□□□□□ -2.16
SLIRP-208ENST00000556956 HUWE1Q7Z6Z7 4374 aaKnown RBP1.54□□□□□ -2.16
SLIRP-208ENST00000556956 DNAH7Q8WXX0 4024 aa1.53□□□□□ -2.16
SLIRP-208ENST00000556956 RPL37P61927 97 aaKnown RBP1.53□□□□□ -2.16
SLIRP-208ENST00000556956 COX6B2Q6YFQ2 88 aa1.53□□□□□ -2.16
SLIRP-208ENST00000556956 NBEAL1Q6ZS30 2694 aa1.53□□□□□ -2.16
SLIRP-208ENST00000556956 C20orf166-AS1Q96NR2 134 aa1.53□□□□□ -2.16
SLIRP-208ENST00000556956 DNAH9Q9NYC9 4486 aa1.53□□□□□ -2.16
SLIRP-208ENST00000556956 DYNC2H1Q8NCM8 4307 aaKnown RBP1.53□□□□□ -2.16
SLIRP-208ENST00000556956 CSMD3Q7Z407 3707 aa1.53□□□□□ -2.17
SLIRP-208ENST00000556956 COL7A1Q02388 2944 aa1.53□□□□□ -2.17
SLIRP-208ENST00000556956 NOTCH1P46531 2555 aa1.53□□□□□ -2.17
SLIRP-208ENST00000556956 STARD9Q9P2P6 4700 aa1.52□□□□□ -2.17
SLIRP-208ENST00000556956 LYSTQ99698 3801 aa1.52□□□□□ -2.17
SLIRP-208ENST00000556956 KRTAP21-3Q3LHN1 58 aa1.52□□□□□ -2.17
SLIRP-208ENST00000556956 KRTAP21-2Q3LI59 83 aa1.52□□□□□ -2.17
SLIRP-208ENST00000556956 DNAH10Q8IVF4 4471 aa1.52□□□□□ -2.17
SLIRP-208ENST00000556956 P0C880 135 aa1.51□□□□□ -2.17
SLIRP-208ENST00000556956 CRIPTQ9P021 101 aa1.51□□□□□ -2.17
SLIRP-208ENST00000556956 VPS13DQ5THJ4 4388 aa1.51□□□□□ -2.17
SLIRP-208ENST00000556956 PLECQ15149 4684 aaKnown RBP1.51□□□□□ -2.17
SLIRP-208ENST00000556956 DNAH17Q9UFH2 4485 aa1.5□□□□□ -2.17
SLIRP-208ENST00000556956 DNAH8Q96JB1 4490 aa1.5□□□□□ -2.17
SLIRP-208ENST00000556956 PRKDCP78527 4128 aaKnown RBP1.5□□□□□ -2.17
SLIRP-208ENST00000556956 DNHD1Q96M86 4753 aa1.5□□□□□ -2.17
SLIRP-208ENST00000556956 MGAM2Q2M2H8 2515 aa1.49□□□□□ -2.17
SLIRP-208ENST00000556956 TENM2Q9NT68 2774 aa1.49□□□□□ -2.17
SLIRP-208ENST00000556956 STAB2Q8WWQ8 2551 aa1.49□□□□□ -2.17
SLIRP-208ENST00000556956 DNAH6Q9C0G6 4158 aa1.49□□□□□ -2.17
SLIRP-208ENST00000556956 C9orf92A6NGG3 77 aa1.49□□□□□ -2.17
SLIRP-208ENST00000556956 TPRXLQ17RH7 258 aa1.49□□□□□ -2.17
SLIRP-208ENST00000556956 A0A0D9SG42 100 aa1.47□□□□□ -2.17
SLIRP-208ENST00000556956 S4R3F8 94 aa1.47□□□□□ -2.17
SLIRP-208ENST00000556956 MEGF8Q7Z7M0 2845 aa1.47□□□□□ -2.17
SLIRP-208ENST00000556956 FRAS1Q86XX4 4008 aa1.47□□□□□ -2.17
SLIRP-208ENST00000556956 HECTD4Q9Y4D8 3996 aa1.46□□□□□ -2.18
SLIRP-208ENST00000556956 DNAH2Q9P225 4427 aa1.45□□□□□ -2.18
SLIRP-208ENST00000556956 KMT2AQ03164 3969 aa1.44□□□□□ -2.18
SLIRP-208ENST00000556956 SRRM2Q9UQ35 2752 aaKnown RBP1.44□□□□□ -2.18
SLIRP-208ENST00000556956 M0QZ58 72 aa1.44□□□□□ -2.18
SLIRP-208ENST00000556956 KRTAP13-4Q3LI77 160 aa1.44□□□□□ -2.18
SLIRP-208ENST00000556956 C10orf95Q9H7T3 257 aa1.44□□□□□ -2.18
SLIRP-208ENST00000556956 DNAH5Q8TE73 4624 aa1.44□□□□□ -2.18
SLIRP-208ENST00000556956 FBN3Q75N90 2809 aa1.44□□□□□ -2.18
SLIRP-208ENST00000556956 DNAH11Q96DT5 4516 aa1.43□□□□□ -2.18
SLIRP-208ENST00000556956 TGP01266 2768 aa1.43□□□□□ -2.18
SLIRP-208ENST00000556956 SACSQ9NZJ4 4579 aa1.43□□□□□ -2.18
SLIRP-208ENST00000556956 HYDINQ4G0P3 5121 aa1.42□□□□□ -2.18
SLIRP-208ENST00000556956 KRTAP12-1P59990 96 aa1.42□□□□□ -2.18
SLIRP-208ENST00000556956 PKD1P98161 4303 aa1.41□□□□□ -2.18
SLIRP-208ENST00000556956 SMR3BP02814 79 aaPredicted RBP1.41□□□□□ -2.18
SLIRP-208ENST00000556956 FAT2Q9NYQ8 4349 aa1.39□□□□□ -2.19
SLIRP-208ENST00000556956 LUZP6Q538Z0 58 aa1.39□□□□□ -2.19
SLIRP-208ENST00000556956 PLAC4Q8WY50 150 aa1.39□□□□□ -2.19
SLIRP-208ENST00000556956 RYR2Q92736 4967 aa1.39□□□□□ -2.19
SLIRP-208ENST00000556956 KRTAP10-4P60372 401 aaPredicted RBP1.38□□□□□ -2.19
SLIRP-208ENST00000556956 LRP1BQ9NZR2 4599 aa1.38□□□□□ -2.19
SLIRP-208ENST00000556956 PP632Q6XCG6 107 aa1.37□□□□□ -2.19
SLIRP-208ENST00000556956 KMT2CQ8NEZ4 4911 aaKnown RBP1.36□□□□□ -2.19
SLIRP-208ENST00000556956 DYNC1H1Q14204 4646 aaKnown RBP1.36□□□□□ -2.19
SLIRP-208ENST00000556956 PKHD1L1Q86WI1 4243 aa1.35□□□□□ -2.19
SLIRP-208ENST00000556956 APOBP04114 4563 aaKnown RBP1.35□□□□□ -2.19
SLIRP-208ENST00000556956 R4GN34 69 aa1.35□□□□□ -2.19
SLIRP-208ENST00000556956 PKHD1P08F94 4074 aa1.35□□□□□ -2.19
SLIRP-208ENST00000556956 FLG2Q5D862 2391 aaPredicted RBP1.34□□□□□ -2.2
SLIRP-208ENST00000556956 RYR3Q15413 4870 aa1.34□□□□□ -2.2
SLIRP-208ENST00000556956 VPS13BQ7Z7G8 4022 aa1.33□□□□□ -2.2
SLIRP-208ENST00000556956 RYR1P21817 5038 aa1.31□□□□□ -2.2
SLIRP-208ENST00000556956 Q5VSD8 79 aa1.31□□□□□ -2.2
SLIRP-208ENST00000556956 CAMK2N1Q7Z7J9 78 aa1.31□□□□□ -2.2
SLIRP-208ENST00000556956 HSPG2P98160 4391 aa1.3□□□□□ -2.2
SLIRP-208ENST00000556956 KRTAP4-1Q9BYQ7 146 aa1.3□□□□□ -2.2
SLIRP-208ENST00000556956 LRP1Q07954 4544 aaKnown RBP1.3□□□□□ -2.2
SLIRP-208ENST00000556956 FAT3Q8TDW7 4589 aa1.29□□□□□ -2.2
SLIRP-208ENST00000556956 TNXBP22105 4242 aa1.29□□□□□ -2.2
SLIRP-208ENST00000556956 FAT1Q14517 4588 aa1.29□□□□□ -2.2
SLIRP-208ENST00000556956 MYCBP2O75592 4640 aa1.28□□□□□ -2.2
SLIRP-208ENST00000556956 EPPK1P58107 5090 aaKnown RBP1.28□□□□□ -2.2
SLIRP-208ENST00000556956 TNP1P09430 55 aa1.28□□□□□ -2.2
SLIRP-208ENST00000556956 MT1HL1P0DM35 61 aa1.27□□□□□ -2.21
SLIRP-208ENST00000556956 KIAA1109Q2LD37 5005 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms