RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 AEBP2Q6ZN18 517 aaPredicted RBP19.04■□□□□ 0.64
SLIRP-208ENST00000556956 CHIC1Q5VXU3 224 aa17.62■□□□□ 0.41
SLIRP-208ENST00000556956 SENP3Q9H4L4 574 aaPredicted RBP16.24■□□□□ 0.19
SLIRP-208ENST00000556956 PHF23Q9BUL5 403 aaPredicted RBP15.97■□□□□ 0.15
SLIRP-208ENST00000556956 POTEDQ86YR6 584 aa15.94■□□□□ 0.14
SLIRP-208ENST00000556956 FOXD1Q16676 465 aa15.34■□□□□ 0.05
SLIRP-208ENST00000556956 MSH5O43196 834 aa14.61□□□□□ -0.07
SLIRP-208ENST00000556956 PIAS4Q8N2W9 510 aaPredicted RBP14.07□□□□□ -0.16
SLIRP-208ENST00000556956 PPP6R1Q9UPN7 881 aa13.69□□□□□ -0.22
SLIRP-208ENST00000556956 ADRA2BP18089 450 aa13.57□□□□□ -0.24
SLIRP-208ENST00000556956 PLPPR3Q6T4P5 718 aa13.18□□□□□ -0.3
SLIRP-208ENST00000556956 CACNB1Q02641 598 aaPredicted RBP13.15□□□□□ -0.3
SLIRP-208ENST00000556956 MAPK8IP2Q13387 824 aaPredicted RBP12.78□□□□□ -0.36
SLIRP-208ENST00000556956 DMRT2Q9Y5R5 561 aa12.77□□□□□ -0.37
SLIRP-208ENST00000556956 RNF39Q9H2S5 420 aa12.44□□□□□ -0.42
SLIRP-208ENST00000556956 DCAF8L1A6NGE4 600 aa12.31□□□□□ -0.44
SLIRP-208ENST00000556956 POTEHQ6S545 545 aa12.28□□□□□ -0.44
SLIRP-208ENST00000556956 SCAF1Q9H7N4 1312 aaKnown RBP12.24□□□□□ -0.45
SLIRP-208ENST00000556956 C1QBPQ07021 282 aaKnown RBP12.15□□□□□ -0.46
SLIRP-208ENST00000556956 HOXD11P31277 338 aaPredicted RBP11.93□□□□□ -0.5
SLIRP-208ENST00000556956 DNAJC5BQ9UF47 199 aa11.61□□□□□ -0.55
SLIRP-208ENST00000556956 RNF216Q9NWF9 866 aaPredicted RBP11.57□□□□□ -0.56
SLIRP-208ENST00000556956 PPP4R3CPQ6ZMV5 832 aa11.48□□□□□ -0.57
SLIRP-208ENST00000556956 CNKSR2Q8WXI2 1034 aa11.43□□□□□ -0.58
SLIRP-208ENST00000556956 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.36□□□□□ -0.599e-10■■■□□ 14.8
SLIRP-208ENST00000556956 DSG3P32926 999 aa11.35□□□□□ -0.59
SLIRP-208ENST00000556956 SPINK5Q9NQ38 1064 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-208ENST00000556956 CAPN15O75808 1086 aa11.18□□□□□ -0.62
SLIRP-208ENST00000556956 U3KPZ7 1027 aaPredicted RBP11.07□□□□□ -0.64
SLIRP-208ENST00000556956 SP7Q8TDD2 431 aaPredicted RBP11.06□□□□□ -0.64
SLIRP-208ENST00000556956 CHRDL2Q6WN34 429 aa10.97□□□□□ -0.65
SLIRP-208ENST00000556956 ABCB7O75027 752 aa10.9□□□□□ -0.66
SLIRP-208ENST00000556956 TRHP20396 242 aaPredicted RBP10.8□□□□□ -0.68
SLIRP-208ENST00000556956 RBM42Q9BTD8 480 aaKnown RBP10.75□□□□□ -0.69
SLIRP-208ENST00000556956 NCBP3Q53F19 620 aaKnown RBP10.66□□□□□ -0.7
SLIRP-208ENST00000556956 ZNF219Q9P2Y4 722 aaPredicted RBP10.66□□□□□ -0.7
SLIRP-208ENST00000556956 NPM3O75607 178 aaKnown RBP10.63□□□□□ -0.71
SLIRP-208ENST00000556956 HAX1O00165 279 aa10.57□□□□□ -0.72
SLIRP-208ENST00000556956 PIP4P2Q8N4L2 257 aa10.53□□□□□ -0.72
SLIRP-208ENST00000556956 PLSCR2Q9NRY7 297 aa10.52□□□□□ -0.73
SLIRP-208ENST00000556956 EVX2Q03828 476 aa10.47□□□□□ -0.73
SLIRP-208ENST00000556956 APLP2Q06481 763 aa10.47□□□□□ -0.73
SLIRP-208ENST00000556956 SLC4A2P04920 1241 aa10.42□□□□□ -0.74
SLIRP-208ENST00000556956 LHX8Q68G74 356 aa10.37□□□□□ -0.75
SLIRP-208ENST00000556956 AKT1S1Q96B36 256 aa10.34□□□□□ -0.75
SLIRP-208ENST00000556956 REM2Q8IYK8 340 aaPredicted RBP10.3□□□□□ -0.76
SLIRP-208ENST00000556956 FXR2P51116 673 aaKnown RBP eCLIP10.29□□□□□ -0.76
SLIRP-208ENST00000556956 POLA2Q14181 598 aa10.29□□□□□ -0.76
SLIRP-208ENST00000556956 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.28□□□□□ -0.76
SLIRP-208ENST00000556956 HNRNPUL2Q1KMD3 747 aaKnown RBP10.28□□□□□ -0.76
SLIRP-208ENST00000556956 PITPNM1O00562 1244 aa10.22□□□□□ -0.77
SLIRP-208ENST00000556956 SAMD1Q6SPF0 538 aaPredicted RBP10.22□□□□□ -0.77
SLIRP-208ENST00000556956 GABBR2O75899 941 aa10.1□□□□□ -0.79
SLIRP-208ENST00000556956 OSCARQ8IYS5 282 aa10.03□□□□□ -0.8
SLIRP-208ENST00000556956 C19orf67A6NJJ6 358 aa10□□□□□ -0.81
SLIRP-208ENST00000556956 POTEIP0CG38 1075 aa9.94□□□□□ -0.82
SLIRP-208ENST00000556956 PRKAR2AP13861 404 aaKnown RBP9.93□□□□□ -0.82
SLIRP-208ENST00000556956 ZBTB12Q9Y330 459 aaPredicted RBP9.89□□□□□ -0.83
SLIRP-208ENST00000556956 POTEMA6NI47 508 aa9.83□□□□□ -0.84
SLIRP-208ENST00000556956 MYCNP04198 464 aaPredicted RBP9.78□□□□□ -0.84
SLIRP-208ENST00000556956 ATF5Q9Y2D1 282 aaPredicted RBP9.77□□□□□ -0.85
SLIRP-208ENST00000556956 POTEGQ6S5H5 508 aa9.76□□□□□ -0.85
SLIRP-208ENST00000556956 OTUD5Q96G74 571 aa9.72□□□□□ -0.85
SLIRP-208ENST00000556956 CLEC11AQ9Y240 323 aa9.71□□□□□ -0.86
SLIRP-208ENST00000556956 CHADLQ6NUI6 762 aa9.68□□□□□ -0.86
SLIRP-208ENST00000556956 KCNA4P22459 653 aa9.64□□□□□ -0.87
SLIRP-208ENST00000556956 SPDYE1Q8NFV5 336 aaPredicted RBP9.62□□□□□ -0.87
SLIRP-208ENST00000556956 POTEB2H3BUK9 544 aa9.6□□□□□ -0.87
SLIRP-208ENST00000556956 PCDH10Q9P2E7 1040 aa9.59□□□□□ -0.87
SLIRP-208ENST00000556956 DCBLD2Q96PD2 775 aa9.58□□□□□ -0.88
SLIRP-208ENST00000556956 SPDYE2BA6NHP3 402 aa9.56□□□□□ -0.88
SLIRP-208ENST00000556956 SPDYE6P0CI01 402 aa9.56□□□□□ -0.88
SLIRP-208ENST00000556956 SPDYE2Q495Y8 402 aa9.56□□□□□ -0.88
SLIRP-208ENST00000556956 CD44P16070 742 aaKnown RBP9.55□□□□□ -0.88
SLIRP-208ENST00000556956 LCE2DQ5TA82 110 aaPredicted RBP9.46□□□□□ -0.9
SLIRP-208ENST00000556956 CLCN6P51797 869 aa9.45□□□□□ -0.9
SLIRP-208ENST00000556956 PRR29P0C7W0 189 aa9.38□□□□□ -0.91
SLIRP-208ENST00000556956 FARP1Q9Y4F1 1045 aaPredicted RBP9.38□□□□□ -0.91
SLIRP-208ENST00000556956 SSUH2Q9Y2M2 353 aa9.37□□□□□ -0.91
SLIRP-208ENST00000556956 GALR2O43603 387 aaPredicted RBP9.36□□□□□ -0.91
SLIRP-208ENST00000556956 ZNF579Q8NAF0 562 aaKnown RBP9.34□□□□□ -0.91
SLIRP-208ENST00000556956 ZNF692Q9BU19 519 aaPredicted RBP9.33□□□□□ -0.92
SLIRP-208ENST00000556956 POTEJP0CG39 1038 aa9.32□□□□□ -0.92
SLIRP-208ENST00000556956 FAM163AQ96GL9 167 aaPredicted RBP9.31□□□□□ -0.92
SLIRP-208ENST00000556956 PELP1Q8IZL8 1130 aaKnown RBP9.3□□□□□ -0.92
SLIRP-208ENST00000556956 FBLN2P98095 1184 aa9.29□□□□□ -0.92
SLIRP-208ENST00000556956 ZRANB1Q9UGI0 708 aa9.28□□□□□ -0.92
SLIRP-208ENST00000556956 MKRN4PQ13434 485 aaPredicted RBP9.25□□□□□ -0.93
SLIRP-208ENST00000556956 CDAN1Q8IWY9 1227 aa9.2□□□□□ -0.94
SLIRP-208ENST00000556956 FOXD4L1Q9NU39 408 aa9.2□□□□□ -0.94
SLIRP-208ENST00000556956 PABPN1Q86U42 306 aaKnown RBP eCLIP9.19□□□□□ -0.94
SLIRP-208ENST00000556956 METRNQ9UJH8 293 aa9.17□□□□□ -0.94
SLIRP-208ENST00000556956 MAMSTRQ6ZN01 415 aa9.13□□□□□ -0.95
SLIRP-208ENST00000556956 PHF12Q96QT6 1004 aa9.12□□□□□ -0.95
SLIRP-208ENST00000556956 MMRN1Q13201 1228 aa9.09□□□□□ -0.95
SLIRP-208ENST00000556956 C7P10643 843 aa9.06□□□□□ -0.96
SLIRP-208ENST00000556956 ASTLQ6HA08 431 aaPredicted RBP9.05□□□□□ -0.96
SLIRP-208ENST00000556956 SLC39A7Q92504 469 aa9.05□□□□□ -0.96
SLIRP-208ENST00000556956 SCUBE2Q9NQ36 999 aa9.05□□□□□ -0.96
SLIRP-208ENST00000556956 ATMINO43313 823 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms