RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 MT1HL1P0DM35 61 aa3.55□□□□□ -1.84
CLCN3-209ENST00000513761 DNAH17Q9UFH2 4485 aa3.55□□□□□ -1.84
CLCN3-209ENST00000513761 ALMS1Q8TCU4 4167 aa3.55□□□□□ -1.84
CLCN3-209ENST00000513761 VPS13DQ5THJ4 4388 aa3.54□□□□□ -1.84
CLCN3-209ENST00000513761 STARD9Q9P2P6 4700 aa3.54□□□□□ -1.84
CLCN3-209ENST00000513761 ANK2Q01484 3957 aa3.54□□□□□ -1.84
CLCN3-209ENST00000513761 FRAS1Q86XX4 4008 aa3.53□□□□□ -1.84
CLCN3-209ENST00000513761 DNAH2Q9P225 4427 aa3.53□□□□□ -1.84
CLCN3-209ENST00000513761 LYSTQ99698 3801 aa3.51□□□□□ -1.85
CLCN3-209ENST00000513761 DNAH3Q8TD57 4116 aa3.5□□□□□ -1.85
CLCN3-209ENST00000513761 LRP1BQ9NZR2 4599 aa3.5□□□□□ -1.85
CLCN3-209ENST00000513761 KMT2AQ03164 3969 aa3.5□□□□□ -1.85
CLCN3-209ENST00000513761 LORP23490 312 aaPredicted RBP3.49□□□□□ -1.85
CLCN3-209ENST00000513761 FAT1Q14517 4588 aa3.48□□□□□ -1.85
CLCN3-209ENST00000513761 PRO2289Q9P1D8 64 aa3.44□□□□□ -1.86
CLCN3-209ENST00000513761 VPS13BQ7Z7G8 4022 aa3.43□□□□□ -1.86
CLCN3-209ENST00000513761 PRKDCP78527 4128 aaKnown RBP3.42□□□□□ -1.86
CLCN3-209ENST00000513761 CMYA5Q8N3K9 4069 aa3.41□□□□□ -1.86
CLCN3-209ENST00000513761 KRTAP4-5Q9BYR2 181 aa3.41□□□□□ -1.86
CLCN3-209ENST00000513761 DNHD1Q96M86 4753 aa3.41□□□□□ -1.86
CLCN3-209ENST00000513761 DYNC1H1Q14204 4646 aaKnown RBP3.4□□□□□ -1.86
CLCN3-209ENST00000513761 DNAH7Q8WXX0 4024 aa3.39□□□□□ -1.87
CLCN3-209ENST00000513761 DNAH6Q9C0G6 4158 aa3.38□□□□□ -1.87
CLCN3-209ENST00000513761 SACSQ9NZJ4 4579 aa3.37□□□□□ -1.87
CLCN3-209ENST00000513761 HECTD4Q9Y4D8 3996 aa3.37□□□□□ -1.87
CLCN3-209ENST00000513761 MYCBP2O75592 4640 aa3.37□□□□□ -1.87
CLCN3-209ENST00000513761 DYNC2H1Q8NCM8 4307 aaKnown RBP3.35□□□□□ -1.87
CLCN3-209ENST00000513761 APOBP04114 4563 aaKnown RBP3.32□□□□□ -1.88
CLCN3-209ENST00000513761 LCE3AQ5TA76 89 aa3.31□□□□□ -1.88
CLCN3-209ENST00000513761 FAT2Q9NYQ8 4349 aa3.3□□□□□ -1.88
CLCN3-209ENST00000513761 INE1O15225 51 aa3.29□□□□□ -1.88
CLCN3-209ENST00000513761 KRTAP4-1Q9BYQ7 146 aa3.28□□□□□ -1.88
CLCN3-209ENST00000513761 KRTAP10-12P60413 245 aa3.28□□□□□ -1.88
CLCN3-209ENST00000513761 KRTAP23-1A1A580 65 aa3.27□□□□□ -1.89
CLCN3-209ENST00000513761 KRTAP12-3P60328 96 aa3.25□□□□□ -1.89
CLCN3-209ENST00000513761 LRP1Q07954 4544 aaKnown RBP3.25□□□□□ -1.89
CLCN3-209ENST00000513761 RYR1P21817 5038 aa3.24□□□□□ -1.89
CLCN3-209ENST00000513761 FAT3Q8TDW7 4589 aa3.21□□□□□ -1.9
CLCN3-209ENST00000513761 HYDINQ4G0P3 5121 aa3.17□□□□□ -1.9
CLCN3-209ENST00000513761 PKHD1P08F94 4074 aa3.17□□□□□ -1.9
CLCN3-209ENST00000513761 KRTAP17-1Q9BYP8 105 aa3.13□□□□□ -1.91
CLCN3-209ENST00000513761 KIAA1109Q2LD37 5005 aa3.12□□□□□ -1.91
CLCN3-209ENST00000513761 LRP2P98164 4655 aa3.11□□□□□ -1.91
CLCN3-209ENST00000513761 LCE2DQ5TA82 110 aaPredicted RBP3.11□□□□□ -1.91
CLCN3-209ENST00000513761 CRCT1Q9UGL9 99 aa3.1□□□□□ -1.91
CLCN3-209ENST00000513761 RYR3Q15413 4870 aa3.09□□□□□ -1.92
CLCN3-209ENST00000513761 SPRR2GQ9BYE4 73 aa3.07□□□□□ -1.92
CLCN3-209ENST00000513761 PKD1P98161 4303 aa3.05□□□□□ -1.92
CLCN3-209ENST00000513761 MT1HP80294 61 aa3.04□□□□□ -1.92
CLCN3-209ENST00000513761 MT2AP02795 61 aa3.04□□□□□ -1.92
CLCN3-209ENST00000513761 HSPG2P98160 4391 aa3.03□□□□□ -1.92
CLCN3-209ENST00000513761 MT1FP04733 61 aa3.02□□□□□ -1.93
CLCN3-209ENST00000513761 LPAP08519 4548 aa3.01□□□□□ -1.93
CLCN3-209ENST00000513761 KMT2CQ8NEZ4 4911 aaKnown RBP3.01□□□□□ -1.93
CLCN3-209ENST00000513761 KRTAP8-1Q8IUC2 63 aa2.98□□□□□ -1.93
CLCN3-209ENST00000513761 RYR2Q92736 4967 aa2.98□□□□□ -1.93
CLCN3-209ENST00000513761 PKHD1L1Q86WI1 4243 aa2.97□□□□□ -1.93
CLCN3-209ENST00000513761 KRTAP19-1Q8IUB9 90 aa2.97□□□□□ -1.93
CLCN3-209ENST00000513761 KRTAP19-5Q3LI72 72 aa2.95□□□□□ -1.94
CLCN3-209ENST00000513761 TNXBP22105 4242 aa2.95□□□□□ -1.94
CLCN3-209ENST00000513761 KRTAP10-5P60370 271 aa2.94□□□□□ -1.94
CLCN3-209ENST00000513761 SPRR5A0A1B0GTR4 108 aa2.94□□□□□ -1.94
CLCN3-209ENST00000513761 KRTAP10-7P60409 375 aaPredicted RBP2.91□□□□□ -1.94
CLCN3-209ENST00000513761 LCE3CQ5T5A8 94 aa2.91□□□□□ -1.94
CLCN3-209ENST00000513761 HERC2O95714 4834 aa2.87□□□□□ -1.95
CLCN3-209ENST00000513761 MT1XP80297 61 aa2.86□□□□□ -1.95
CLCN3-209ENST00000513761 KRTAP19-8Q3LI54 63 aa2.85□□□□□ -1.95
CLCN3-209ENST00000513761 LCE2BO14633 110 aa2.82□□□□□ -1.96
CLCN3-209ENST00000513761 MT1BP07438 61 aa2.82□□□□□ -1.96
CLCN3-209ENST00000513761 KRTAP19-2Q3LHN2 52 aa2.81□□□□□ -1.96
CLCN3-209ENST00000513761 LCE2CQ5TA81 110 aa2.81□□□□□ -1.96
CLCN3-209ENST00000513761 KRTAP9-8Q9BYQ0 159 aa2.8□□□□□ -1.96
CLCN3-209ENST00000513761 MUC17Q685J3 4493 aa2.78□□□□□ -1.96
CLCN3-209ENST00000513761 FLGP20930 4061 aaPredicted RBP2.77□□□□□ -1.97
CLCN3-209ENST00000513761 KRTAP4-8A0A0G2JLE6 195 aa2.75□□□□□ -1.97
CLCN3-209ENST00000513761 KRTAP4-8Q9BYQ9 185 aa2.75□□□□□ -1.97
CLCN3-209ENST00000513761 HERC1Q15751 4861 aa2.72□□□□□ -1.97
CLCN3-209ENST00000513761 EPPK1P58107 5090 aaKnown RBP2.7□□□□□ -1.98
CLCN3-209ENST00000513761 KRTAP9-3Q9BYQ3 159 aa2.69□□□□□ -1.98
CLCN3-209ENST00000513761 PCLOQ9Y6V0 5065 aa2.69□□□□□ -1.98
CLCN3-209ENST00000513761 ABCA13Q86UQ4 5058 aa2.69□□□□□ -1.98
CLCN3-209ENST00000513761 KRTAP4-7Q9BYR0 210 aa2.68□□□□□ -1.98
CLCN3-209ENST00000513761 MUC2Q02817 5179 aa2.66□□□□□ -1.98
CLCN3-209ENST00000513761 KRTAP12-4P60329 112 aa2.66□□□□□ -1.98
CLCN3-209ENST00000513761 SPRR2FQ96RM1 72 aa2.66□□□□□ -1.98
CLCN3-209ENST00000513761 MT1GP13640 62 aa2.65□□□□□ -1.98
CLCN3-209ENST00000513761 LCE3BQ5TA77 95 aa2.63□□□□□ -1.99
CLCN3-209ENST00000513761 KRTAP19-4Q3LI73 84 aa2.63□□□□□ -1.99
CLCN3-209ENST00000513761 BIRC6Q9NR09 4857 aa2.62□□□□□ -1.99
CLCN3-209ENST00000513761 HMCN2Q8NDA2 5059 aa2.62□□□□□ -1.99
CLCN3-209ENST00000513761 UBR4Q5T4S7 5183 aa2.6□□□□□ -1.99
CLCN3-209ENST00000513761 FAT4Q6V0I7 4981 aa2.59□□□□□ -1.99
CLCN3-209ENST00000513761 MT1LQ93083 61 aa2.55□□□□□ -2
CLCN3-209ENST00000513761 LCE2AQ5TA79 106 aaPredicted RBP2.54□□□□□ -2
CLCN3-209ENST00000513761 MT1EP04732 61 aa2.52□□□□□ -2.01
CLCN3-209ENST00000513761 RNF213Q63HN8 5207 aa2.5□□□□□ -2.01
CLCN3-209ENST00000513761 LOC100996750A0A140TA64 210 aa2.5□□□□□ -2.01
CLCN3-209ENST00000513761 FSIP2Q5CZC0 6907 aa2.48□□□□□ -2.01
CLCN3-209ENST00000513761 KRTAP4-3Q9BYR4 195 aa2.47□□□□□ -2.01
CLCN3-209ENST00000513761 LCE3DQ9BYE3 92 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms