RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 NISCHQ9Y2I1 1504 aa13.32□□□□□ -0.28
CLCN3-209ENST00000513761 DCAF8L2P0C7V8 631 aa13.09□□□□□ -0.31
CLCN3-209ENST00000513761 SUPT5HO00267 1087 aaKnown RBP13.02□□□□□ -0.33
CLCN3-209ENST00000513761 SHROOM4Q9ULL8 1493 aa12.85□□□□□ -0.35
CLCN3-209ENST00000513761 PCGF6Q9BYE7 350 aa12.54□□□□□ -0.4
CLCN3-209ENST00000513761 EHMT2Q96KQ7 1210 aa12.48□□□□□ -0.41
CLCN3-209ENST00000513761 FAM9AQ8IZU1 332 aaPredicted RBP12.22□□□□□ -0.45
CLCN3-209ENST00000513761 HRCP23327 699 aa12.19□□□□□ -0.46
CLCN3-209ENST00000513761 TTBK1Q5TCY1 1321 aaPredicted RBP12.11□□□□□ -0.47
CLCN3-209ENST00000513761 PPARGC1BQ86YN6 1023 aaKnown RBP12.07□□□□□ -0.48
CLCN3-209ENST00000513761 PELP1Q8IZL8 1130 aaKnown RBP12.07□□□□□ -0.48
CLCN3-209ENST00000513761 ZEB1P37275 1124 aaPredicted RBP12.06□□□□□ -0.48
CLCN3-209ENST00000513761 CENPBP07199 599 aaPredicted RBP11.98□□□□□ -0.49
CLCN3-209ENST00000513761 CCER1Q8TC90 406 aaPredicted RBP11.98□□□□□ -0.49
CLCN3-209ENST00000513761 TRIM41Q8WV44 630 aa11.96□□□□□ -0.49
CLCN3-209ENST00000513761 CHIC1Q5VXU3 224 aa11.96□□□□□ -0.5
CLCN3-209ENST00000513761 LOC105371045A0A1W2PR82 267 aa11.95□□□□□ -0.5
CLCN3-209ENST00000513761 TRIM26Q12899 539 aaPredicted RBP11.94□□□□□ -0.5
CLCN3-209ENST00000513761 YTHDC1Q96MU7 727 aaKnown RBP11.86□□□□□ -0.51
CLCN3-209ENST00000513761 APLP2Q06481 763 aa11.85□□□□□ -0.51
CLCN3-209ENST00000513761 RANGAP1P46060 587 aaPredicted RBP11.75□□□□□ -0.53
CLCN3-209ENST00000513761 MYT1Q01538 1121 aa11.73□□□□□ -0.53
CLCN3-209ENST00000513761 UBTFP17480 764 aaKnown RBP11.67□□□□□ -0.54
CLCN3-209ENST00000513761 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.62□□□□□ -0.55
CLCN3-209ENST00000513761 DIEXFQ68CQ4 756 aaKnown RBP11.56□□□□□ -0.56
CLCN3-209ENST00000513761 ERICH6Q7L0X2 663 aa11.56□□□□□ -0.56
CLCN3-209ENST00000513761 GTF3C3Q9Y5Q9 886 aa11.52□□□□□ -0.57
CLCN3-209ENST00000513761 HNRNPUL2Q1KMD3 747 aaKnown RBP11.48□□□□□ -0.57
CLCN3-209ENST00000513761 NEFLP07196 543 aa11.47□□□□□ -0.57
CLCN3-209ENST00000513761 ATP1B4Q9UN42 357 aaPredicted RBP11.43□□□□□ -0.58
CLCN3-209ENST00000513761 ACIN1Q9UKV3 1341 aaKnown RBP11.4□□□□□ -0.58
CLCN3-209ENST00000513761 ITGAEP38570 1179 aa11.37□□□□□ -0.59
CLCN3-209ENST00000513761 MYO15BQ96JP2 1530 aa11.36□□□□□ -0.59
CLCN3-209ENST00000513761 SCAF1Q9H7N4 1312 aaKnown RBP11.34□□□□□ -0.59
CLCN3-209ENST00000513761 DCAF1Q9Y4B6 1507 aa11.32□□□□□ -0.6
CLCN3-209ENST00000513761 NEUROD1Q13562 356 aa11.27□□□□□ -0.61
CLCN3-209ENST00000513761 ZNF316A6NFI3 1004 aaPredicted RBP11.26□□□□□ -0.61
CLCN3-209ENST00000513761 BCANQ96GW7 911 aa11.24□□□□□ -0.61
CLCN3-209ENST00000513761 ZCCHC6Q5VYS8 1495 aaKnown RBP11.13□□□□□ -0.63
CLCN3-209ENST00000513761 CNGB1Q14028 1251 aaPredicted RBP11.13□□□□□ -0.63
CLCN3-209ENST00000513761 POLR3GLQ9BT43 218 aa11.09□□□□□ -0.63
CLCN3-209ENST00000513761 FAM50AQ14320 339 aaKnown RBP11.03□□□□□ -0.64
CLCN3-209ENST00000513761 MIER1Q8N108 512 aa11.02□□□□□ -0.65
CLCN3-209ENST00000513761 CSRNP3Q8WYN3 585 aa11.01□□□□□ -0.65
CLCN3-209ENST00000513761 CCDC180Q9P1Z9 1646 aa10.99□□□□□ -0.65
CLCN3-209ENST00000513761 ANP32CO43423 234 aa10.97□□□□□ -0.65
CLCN3-209ENST00000513761 FKBP8Q14318 412 aa10.96□□□□□ -0.66
CLCN3-209ENST00000513761 RTL5Q5HYW3 569 aaPredicted RBP10.95□□□□□ -0.66
CLCN3-209ENST00000513761 CDK11AQ9UQ88 783 aaPredicted RBP10.95□□□□□ -0.66
CLCN3-209ENST00000513761 ABCC9O60706 1549 aa10.95□□□□□ -0.66
CLCN3-209ENST00000513761 DAXXQ9UER7 740 aaPredicted RBP10.95□□□□□ -0.66
CLCN3-209ENST00000513761 PABPN1Q86U42 306 aaKnown RBP eCLIP10.93□□□□□ -0.66
CLCN3-209ENST00000513761 SCRIBQ14160 1630 aa10.9□□□□□ -0.66
CLCN3-209ENST00000513761 CLSPNQ9HAW4 1339 aa10.88□□□□□ -0.67
CLCN3-209ENST00000513761 DDX10Q13206 875 aaKnown RBP10.87□□□□□ -0.67
CLCN3-209ENST00000513761 TRIM52Q96A61 297 aa10.86□□□□□ -0.67
CLCN3-209ENST00000513761 RSF1Q96T23 1441 aaPredicted RBP10.81□□□□□ -0.68
CLCN3-209ENST00000513761 P3H3Q8IVL6 736 aa10.81□□□□□ -0.68
CLCN3-209ENST00000513761 HNRNPUQ00839 825 aaKnown RBP eCLIP10.78□□□□□ -0.68
CLCN3-209ENST00000513761 ZNF326Q5BKZ1 582 aaKnown RBP10.77□□□□□ -0.68
CLCN3-209ENST00000513761 CEP162Q5TB80 1403 aa10.77□□□□□ -0.69
CLCN3-209ENST00000513761 HIRIP3Q9BW71 556 aaPredicted RBP10.77□□□□□ -0.69
CLCN3-209ENST00000513761 IRX6P78412 446 aaPredicted RBP10.75□□□□□ -0.69
CLCN3-209ENST00000513761 ANP32EQ9BTT0 268 aa10.74□□□□□ -0.69
CLCN3-209ENST00000513761 SUPT16HQ9Y5B9 1047 aaKnown RBP10.73□□□□□ -0.69
CLCN3-209ENST00000513761 NPM2Q86SE8 214 aaKnown RBP10.72□□□□□ -0.69
CLCN3-209ENST00000513761 ANP32AP39687 249 aaKnown RBP10.72□□□□□ -0.69
CLCN3-209ENST00000513761 NBR1Q14596 966 aa10.7□□□□□ -0.7
CLCN3-209ENST00000513761 CLIP1P30622 1438 aa10.7□□□□□ -0.7
CLCN3-209ENST00000513761 FAM9BQ8IZU0 186 aa10.7□□□□□ -0.7
CLCN3-209ENST00000513761 TONSLQ96HA7 1378 aa10.69□□□□□ -0.7
CLCN3-209ENST00000513761 ARID3CA6NKF2 412 aa10.66□□□□□ -0.7
CLCN3-209ENST00000513761 TNIKQ9UKE5 1360 aa10.64□□□□□ -0.71
CLCN3-209ENST00000513761 MYT1LQ9UL68 1186 aa10.63□□□□□ -0.71
CLCN3-209ENST00000513761 GOLGA3Q08378 1498 aa10.62□□□□□ -0.71
CLCN3-209ENST00000513761 SLC4A1APQ9BWU0 796 aaKnown RBP10.62□□□□□ -0.71
CLCN3-209ENST00000513761 RB1CC1Q8TDY2 1594 aa10.59□□□□□ -0.71
CLCN3-209ENST00000513761 CCDC136Q96JN2 1154 aa10.59□□□□□ -0.71
CLCN3-209ENST00000513761 SALL2Q9Y467 1007 aaPredicted RBP10.59□□□□□ -0.71
CLCN3-209ENST00000513761 EIF5BO60841 1220 aaKnown RBP10.59□□□□□ -0.71
CLCN3-209ENST00000513761 MRS2Q9HD23 443 aa10.58□□□□□ -0.72
CLCN3-209ENST00000513761 BCL11AQ9H165 835 aa10.58□□□□□ -0.72
CLCN3-209ENST00000513761 ZBTB47Q9UFB7 747 aaPredicted RBP10.57□□□□□ -0.72
CLCN3-209ENST00000513761 EEA1Q15075 1411 aa10.57□□□□□ -0.72
CLCN3-209ENST00000513761 CHIC2Q9UKJ5 165 aa10.57□□□□□ -0.72
CLCN3-209ENST00000513761 SOGA1O94964 1423 aa10.56□□□□□ -0.72
CLCN3-209ENST00000513761 SIN3AQ96ST3 1273 aa10.55□□□□□ -0.72
CLCN3-209ENST00000513761 SENP3-EIF4A1A0A087X0R7 540 aa10.55□□□□□ -0.72
CLCN3-209ENST00000513761 CECR2Q9BXF3 1484 aa10.54□□□□□ -0.72
CLCN3-209ENST00000513761 TSHZ2Q9NRE2 1034 aa10.54□□□□□ -0.72
CLCN3-209ENST00000513761 RBM19Q9Y4C8 960 aaKnown RBP10.52□□□□□ -0.73
CLCN3-209ENST00000513761 WRNQ14191 1432 aaPredicted RBP eCLIP10.52□□□□□ -0.73
CLCN3-209ENST00000513761 ZNF777Q9ULD5 760 aaPredicted RBP10.5□□□□□ -0.73
CLCN3-209ENST00000513761 TMC1Q8TDI8 760 aa10.5□□□□□ -0.73
CLCN3-209ENST00000513761 CEP164Q9UPV0 1460 aa10.49□□□□□ -0.73
CLCN3-209ENST00000513761 CANXP27824 592 aaKnown RBP10.49□□□□□ -0.73
CLCN3-209ENST00000513761 EIF4G2P78344 907 aaKnown RBP eCLIP10.47□□□□□ -0.73
CLCN3-209ENST00000513761 RRP7BPQ9NSQ0 103 aa10.46□□□□□ -0.73
CLCN3-209ENST00000513761 ABCC8Q09428 1581 aa10.46□□□□□ -0.74
CLCN3-209ENST00000513761 CCDC88BA6NC98 1476 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms