RNA–Protein interactions for RNA: ENST00000496946.1

SNRNP48-202, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 2,610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-202ENST00000496946 CMYA5Q8N3K9 4069 aa1.26□□□□□ -2.21
SNRNP48-202ENST00000496946 DNAH6Q9C0G6 4158 aa1.25□□□□□ -2.21
SNRNP48-202ENST00000496946 UBR4Q5T4S7 5183 aa1.25□□□□□ -2.21
SNRNP48-202ENST00000496946 COL12A1Q99715 3063 aa1.25□□□□□ -2.21
SNRNP48-202ENST00000496946 ABCA13Q86UQ4 5058 aa1.25□□□□□ -2.21
SNRNP48-202ENST00000496946 CHD9Q3L8U1 2897 aa1.25□□□□□ -2.21
SNRNP48-202ENST00000496946 LRBAP50851 2863 aa1.24□□□□□ -2.21
SNRNP48-202ENST00000496946 HSPG2P98160 4391 aa1.24□□□□□ -2.21
SNRNP48-202ENST00000496946 ZFHX4Q86UP3 3567 aa1.24□□□□□ -2.21
SNRNP48-202ENST00000496946 MUC5ACP98088 5654 aa1.24□□□□□ -2.21
SNRNP48-202ENST00000496946 DMXL1Q9Y485 3027 aa1.23□□□□□ -2.21
SNRNP48-202ENST00000496946 LRRK2Q5S007 2527 aa1.23□□□□□ -2.21
SNRNP48-202ENST00000496946 PKHD1L1Q86WI1 4243 aa1.23□□□□□ -2.21
SNRNP48-202ENST00000496946 CELSR3Q9NYQ7 3312 aa1.23□□□□□ -2.21
SNRNP48-202ENST00000496946 KALRNO60229 2985 aa1.23□□□□□ -2.21
SNRNP48-202ENST00000496946 MUC2Q02817 5179 aa1.22□□□□□ -2.21
SNRNP48-202ENST00000496946 DEFB4AO15263 64 aa1.22□□□□□ -2.21
SNRNP48-202ENST00000496946 LCE1CQ5T751 118 aa1.22□□□□□ -2.21
SNRNP48-202ENST00000496946 LCE1BQ5T7P3 118 aa1.22□□□□□ -2.21
SNRNP48-202ENST00000496946 RELNP78509 3460 aa1.22□□□□□ -2.21
SNRNP48-202ENST00000496946 AKAP9Q99996 3911 aa1.22□□□□□ -2.21
SNRNP48-202ENST00000496946 TLN1Q9Y490 2541 aaKnown RBP1.22□□□□□ -2.21
SNRNP48-202ENST00000496946 MEGF8Q7Z7M0 2845 aa1.22□□□□□ -2.21
SNRNP48-202ENST00000496946 ATMQ13315 3056 aa1.22□□□□□ -2.21
SNRNP48-202ENST00000496946 DCHS1Q96JQ0 3298 aa1.22□□□□□ -2.21
SNRNP48-202ENST00000496946 USP9YO00507 2555 aaPredicted RBP1.21□□□□□ -2.22
SNRNP48-202ENST00000496946 CFAP46Q8IYW2 2715 aa1.21□□□□□ -2.22
SNRNP48-202ENST00000496946 DMDP11532 3685 aa1.21□□□□□ -2.22
SNRNP48-202ENST00000496946 XIRP2A4UGR9 3374 aa1.21□□□□□ -2.22
SNRNP48-202ENST00000496946 LAMA2P24043 3122 aaKnown RBP1.21□□□□□ -2.22
SNRNP48-202ENST00000496946 EYSQ5T1H1 3165 aa1.21□□□□□ -2.22
SNRNP48-202ENST00000496946 DEFB135Q30KP9 77 aa1.21□□□□□ -2.22
SNRNP48-202ENST00000496946 POLQO75417 2590 aa1.21□□□□□ -2.22
SNRNP48-202ENST00000496946 USP34Q70CQ2 3546 aa1.21□□□□□ -2.22
SNRNP48-202ENST00000496946 SPTAN1Q13813 2472 aaKnown RBP1.2□□□□□ -2.22
SNRNP48-202ENST00000496946 TNP1P09430 55 aa1.2□□□□□ -2.22
SNRNP48-202ENST00000496946 ITPR3Q14573 2671 aa1.2□□□□□ -2.22
SNRNP48-202ENST00000496946 MYCBP2O75592 4640 aa1.2□□□□□ -2.22
SNRNP48-202ENST00000496946 FRYQ5TBA9 3013 aa1.19□□□□□ -2.22
SNRNP48-202ENST00000496946 DNAH12Q6ZR08 3092 aa1.19□□□□□ -2.22
SNRNP48-202ENST00000496946 KRTAP2-1Q9BYU5 128 aa1.19□□□□□ -2.22
SNRNP48-202ENST00000496946 HMCN2Q8NDA2 5059 aa1.19□□□□□ -2.22
SNRNP48-202ENST00000496946 ATRQ13535 2644 aa1.19□□□□□ -2.22
SNRNP48-202ENST00000496946 PDZD2O15018 2839 aa1.18□□□□□ -2.22
SNRNP48-202ENST00000496946 FAT2Q9NYQ8 4349 aa1.18□□□□□ -2.22
SNRNP48-202ENST00000496946 FREM2Q5SZK8 3169 aa1.18□□□□□ -2.22
SNRNP48-202ENST00000496946 UNC80Q8N2C7 3258 aa1.18□□□□□ -2.22
SNRNP48-202ENST00000496946 DCHS2Q6V1P9 2916 aa1.18□□□□□ -2.22
SNRNP48-202ENST00000496946 DMXL2Q8TDJ6 3036 aa1.18□□□□□ -2.22
SNRNP48-202ENST00000496946 ACANP16112 2415 aa1.17□□□□□ -2.22
SNRNP48-202ENST00000496946 DNAH8Q96JB1 4490 aa1.17□□□□□ -2.22
SNRNP48-202ENST00000496946 LAMA1P25391 3075 aa1.17□□□□□ -2.22
SNRNP48-202ENST00000496946 APCP25054 2843 aa1.17□□□□□ -2.22
SNRNP48-202ENST00000496946 MTORP42345 2549 aa1.16□□□□□ -2.22
SNRNP48-202ENST00000496946 LAMA5O15230 3695 aa1.16□□□□□ -2.22
SNRNP48-202ENST00000496946 COL7A1Q02388 2944 aa1.16□□□□□ -2.22
SNRNP48-202ENST00000496946 NIPBLQ6KC79 2804 aaeCLIP1.16□□□□□ -2.22
SNRNP48-202ENST00000496946 HECTD4Q9Y4D8 3996 aa1.15□□□□□ -2.23
SNRNP48-202ENST00000496946 ASPMQ8IZT6 3477 aa1.15□□□□□ -2.23
SNRNP48-202ENST00000496946 CENPEQ02224 2701 aa1.15□□□□□ -2.23
SNRNP48-202ENST00000496946 HIVEP1P15822 2718 aa1.15□□□□□ -2.23
SNRNP48-202ENST00000496946 RPS29P62273 56 aaKnown RBP1.15□□□□□ -2.23
SNRNP48-202ENST00000496946 LAMA3Q16787 3333 aa1.15□□□□□ -2.23
SNRNP48-202ENST00000496946 TLN2Q9Y4G6 2542 aa1.15□□□□□ -2.23
SNRNP48-202ENST00000496946 UTP20O75691 2785 aaKnown RBP1.14□□□□□ -2.23
SNRNP48-202ENST00000496946 TGP01266 2768 aa1.14□□□□□ -2.23
SNRNP48-202ENST00000496946 STARD9Q9P2P6 4700 aa1.14□□□□□ -2.23
SNRNP48-202ENST00000496946 KRTAP12-4P60329 112 aa1.14□□□□□ -2.23
SNRNP48-202ENST00000496946 KRTAP5-10Q6L8G5 202 aa1.14□□□□□ -2.23
SNRNP48-202ENST00000496946 NBEAL1Q6ZS30 2694 aa1.14□□□□□ -2.23
SNRNP48-202ENST00000496946 STAB1Q9NY15 2570 aa1.14□□□□□ -2.23
SNRNP48-202ENST00000496946 SPENQ96T58 3664 aaKnown RBP1.14□□□□□ -2.23
SNRNP48-202ENST00000496946 CSMD1Q96PZ7 3565 aa1.14□□□□□ -2.23
SNRNP48-202ENST00000496946 LOC400499M0QZD8 3231 aa1.13□□□□□ -2.23
SNRNP48-202ENST00000496946 PRKDCP78527 4128 aaKnown RBP1.13□□□□□ -2.23
SNRNP48-202ENST00000496946 MUC3AQ02505 3323 aa1.12□□□□□ -2.23
SNRNP48-202ENST00000496946 DNAH14Q0VDD8 3507 aa1.12□□□□□ -2.23
SNRNP48-202ENST00000496946 C9orf92A6NGG3 77 aa1.12□□□□□ -2.23
SNRNP48-202ENST00000496946 FLNCQ14315 2725 aa1.12□□□□□ -2.23
SNRNP48-202ENST00000496946 TACC2O95359 2948 aa1.11□□□□□ -2.23
SNRNP48-202ENST00000496946 NSD1Q96L73 2696 aaPredicted RBP1.11□□□□□ -2.23
SNRNP48-202ENST00000496946 FRAS1Q86XX4 4008 aa1.11□□□□□ -2.23
SNRNP48-202ENST00000496946 WDFY3Q8IZQ1 3526 aa1.11□□□□□ -2.23
SNRNP48-202ENST00000496946 TENM3Q9P273 2699 aa1.11□□□□□ -2.23
SNRNP48-202ENST00000496946 PKHD1P08F94 4074 aa1.1□□□□□ -2.23
SNRNP48-202ENST00000496946 CSMD3Q7Z407 3707 aa1.1□□□□□ -2.23
SNRNP48-202ENST00000496946 PLECQ15149 4684 aaKnown RBP1.1□□□□□ -2.23
SNRNP48-202ENST00000496946 VCANP13611 3396 aa1.1□□□□□ -2.23
SNRNP48-202ENST00000496946 SMG1Q96Q15 3661 aaKnown RBP1.1□□□□□ -2.23
SNRNP48-202ENST00000496946 DYNC1H1Q14204 4646 aaKnown RBP1.1□□□□□ -2.23
SNRNP48-202ENST00000496946 STAB2Q8WWQ8 2551 aa1.1□□□□□ -2.23
SNRNP48-202ENST00000496946 ITPR2Q14571 2701 aa1.1□□□□□ -2.23
SNRNP48-202ENST00000496946 BRCA2P51587 3418 aa1.09□□□□□ -2.23
SNRNP48-202ENST00000496946 DNAH10Q8IVF4 4471 aa1.09□□□□□ -2.23
SNRNP48-202ENST00000496946 SACSQ9NZJ4 4579 aa1.09□□□□□ -2.23
SNRNP48-202ENST00000496946 SMR3AQ99954 134 aa1.09□□□□□ -2.24
SNRNP48-202ENST00000496946 MACF1Q9UPN3 7388 aaKnown RBP1.08□□□□□ -2.24
SNRNP48-202ENST00000496946 M0R2T5 61 aa1.08□□□□□ -2.24
SNRNP48-202ENST00000496946 DNAH2Q9P225 4427 aa1.07□□□□□ -2.24
SNRNP48-202ENST00000496946 HUWE1Q7Z6Z7 4374 aaKnown RBP1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms