RNA–Protein interactions for RNA: ENST00000482558.5

SNX13-208, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 1,139 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-208ENST00000482558 LOC101927531A0A1B0GV80 90 aa4.43□□□□□ -1.7
SNX13-208ENST00000482558 RPS29P62273 56 aaKnown RBP4.43□□□□□ -1.7
SNX13-208ENST00000482558 BIRC6Q9NR09 4857 aa4.43□□□□□ -1.7
SNX13-208ENST00000482558 SPINK1P00995 79 aa4.42□□□□□ -1.7
SNX13-208ENST00000482558 SPAG11AQ6PDA7 123 aa4.42□□□□□ -1.7
SNX13-208ENST00000482558 C7orf65Q6ZTY9 151 aa4.42□□□□□ -1.7
SNX13-208ENST00000482558 Q1T7F1 81 aa4.4□□□□□ -1.71
SNX13-208ENST00000482558 KRTAP13-2Q52LG2 175 aa4.4□□□□□ -1.71
SNX13-208ENST00000482558 FP248Q71RG6 208 aaPredicted RBP4.4□□□□□ -1.71
SNX13-208ENST00000482558 KRTAP1-4P0C5Y4 121 aa4.39□□□□□ -1.71
SNX13-208ENST00000482558 EPPK1P58107 5090 aaKnown RBP4.38□□□□□ -1.71
SNX13-208ENST00000482558 PKD1P98161 4303 aa4.37□□□□□ -1.71
SNX13-208ENST00000482558 FAT2Q9NYQ8 4349 aa4.37□□□□□ -1.71
SNX13-208ENST00000482558 KRTAP13-3Q3SY46 172 aa4.34□□□□□ -1.71
SNX13-208ENST00000482558 LINC00304Q8N9R0 145 aa4.34□□□□□ -1.71
SNX13-208ENST00000482558 A0A1B0GVY2 172 aa4.33□□□□□ -1.72
SNX13-208ENST00000482558 KRTAP10-12P60413 245 aa4.33□□□□□ -1.72
SNX13-208ENST00000482558 PCOTHQ58A44 107 aa4.32□□□□□ -1.72
SNX13-208ENST00000482558 COA5Q86WW8 74 aa4.32□□□□□ -1.72
SNX13-208ENST00000482558 LRP1BQ9NZR2 4599 aa4.32□□□□□ -1.72
SNX13-208ENST00000482558 ACYP2P14621 99 aa4.31□□□□□ -1.72
SNX13-208ENST00000482558 OBSCNQ5VST9 7968 aa4.31□□□□□ -1.72
SNX13-208ENST00000482558 HYDINQ4G0P3 5121 aa4.3□□□□□ -1.72
SNX13-208ENST00000482558 VPS13BQ7Z7G8 4022 aa4.29□□□□□ -1.72
SNX13-208ENST00000482558 SACSQ9NZJ4 4579 aa4.29□□□□□ -1.72
SNX13-208ENST00000482558 A0A1B0GU33 70 aa4.26□□□□□ -1.73
SNX13-208ENST00000482558 DMAC1Q96GE9 116 aa4.26□□□□□ -1.73
SNX13-208ENST00000482558 RETNLBQ9BQ08 111 aa4.26□□□□□ -1.73
SNX13-208ENST00000482558 DYNC1H1Q14204 4646 aaKnown RBP4.26□□□□□ -1.73
SNX13-208ENST00000482558 HRES1P13985 223 aa4.25□□□□□ -1.73
SNX13-208ENST00000482558 LINC01558Q9Y6Z2 57 aa4.25□□□□□ -1.73
SNX13-208ENST00000482558 KRTAP10-4P60372 401 aaPredicted RBP4.24□□□□□ -1.73
SNX13-208ENST00000482558 RYR2Q92736 4967 aa4.24□□□□□ -1.73
SNX13-208ENST00000482558 PCLOQ9Y6V0 5065 aa4.24□□□□□ -1.73
SNX13-208ENST00000482558 CHKB-CPT1BH3BT56 60 aa4.23□□□□□ -1.73
SNX13-208ENST00000482558 SMR3BP02814 79 aaPredicted RBP4.23□□□□□ -1.73
SNX13-208ENST00000482558 LCE1FQ5T754 118 aa4.21□□□□□ -1.74
SNX13-208ENST00000482558 C20orf166-AS1Q96NR2 134 aa4.21□□□□□ -1.74
SNX13-208ENST00000482558 PRR15LQ9BU68 103 aa4.21□□□□□ -1.74
SNX13-208ENST00000482558 Q5VV11 94 aa4.2□□□□□ -1.74
SNX13-208ENST00000482558 HERC2O95714 4834 aa4.2□□□□□ -1.74
SNX13-208ENST00000482558 ATP11AUNQ6ZP68 121 aa4.19□□□□□ -1.74
SNX13-208ENST00000482558 KRTAP4-3Q9BYR4 195 aa4.19□□□□□ -1.74
SNX13-208ENST00000482558 PKHD1P08F94 4074 aa4.19□□□□□ -1.74
SNX13-208ENST00000482558 APOBP04114 4563 aaKnown RBP4.19□□□□□ -1.74
SNX13-208ENST00000482558 KRTAP25-1Q3LHN0 102 aa4.18□□□□□ -1.74
SNX13-208ENST00000482558 SPINT4Q6UDR6 99 aa4.18□□□□□ -1.74
SNX13-208ENST00000482558 SPTSSBQ8NFR3 76 aa4.18□□□□□ -1.74
SNX13-208ENST00000482558 ROMO1P60602 79 aa4.17□□□□□ -1.74
SNX13-208ENST00000482558 RYR1P21817 5038 aa4.17□□□□□ -1.74
SNX13-208ENST00000482558 PKHD1L1Q86WI1 4243 aa4.17□□□□□ -1.74
SNX13-208ENST00000482558 A6NN06 94 aa4.16□□□□□ -1.74
SNX13-208ENST00000482558 KRTAP10-8P60410 259 aa4.14□□□□□ -1.75
SNX13-208ENST00000482558 Q5VSD8 79 aa4.13□□□□□ -1.75
SNX13-208ENST00000482558 CDC42SE1Q9NRR8 79 aa4.13□□□□□ -1.75
SNX13-208ENST00000482558 A0A1B0GU69 56 aa4.11□□□□□ -1.75
SNX13-208ENST00000482558 FAT1Q14517 4588 aa4.1□□□□□ -1.75
SNX13-208ENST00000482558 C9orf92A6NGG3 77 aa4.1□□□□□ -1.75
SNX13-208ENST00000482558 R4GN34 69 aa4.08□□□□□ -1.76
SNX13-208ENST00000482558 SPINK7P58062 85 aa4.07□□□□□ -1.76
SNX13-208ENST00000482558 FLG2Q5D862 2391 aaPredicted RBP4.06□□□□□ -1.76
SNX13-208ENST00000482558 UQCR11O14957 56 aa4.06□□□□□ -1.76
SNX13-208ENST00000482558 RPL37P61927 97 aaKnown RBP4.04□□□□□ -1.76
SNX13-208ENST00000482558 COX6B2Q6YFQ2 88 aa4.04□□□□□ -1.76
SNX13-208ENST00000482558 SPATA8Q6RVD6 105 aa4.03□□□□□ -1.76
SNX13-208ENST00000482558 TNXBP22105 4242 aa4.01□□□□□ -1.77
SNX13-208ENST00000482558 UBR4Q5T4S7 5183 aa4.01□□□□□ -1.77
SNX13-208ENST00000482558 FAT3Q8TDW7 4589 aa4.01□□□□□ -1.77
SNX13-208ENST00000482558 HSPG2P98160 4391 aa4□□□□□ -1.77
SNX13-208ENST00000482558 MIR22HGQ0VDD5 57 aa4□□□□□ -1.77
SNX13-208ENST00000482558 LCE3CQ5T5A8 94 aa4□□□□□ -1.77
SNX13-208ENST00000482558 KRTAP5-2Q701N4 177 aa4□□□□□ -1.77
SNX13-208ENST00000482558 KIAA1109Q2LD37 5005 aa3.99□□□□□ -1.77
SNX13-208ENST00000482558 ABCA13Q86UQ4 5058 aa3.98□□□□□ -1.77
SNX13-208ENST00000482558 MT1HL1P0DM35 61 aa3.97□□□□□ -1.77
SNX13-208ENST00000482558 TPRXLQ17RH7 258 aa3.97□□□□□ -1.77
SNX13-208ENST00000482558 PRO2289Q9P1D8 64 aa3.95□□□□□ -1.78
SNX13-208ENST00000482558 DMBT1Q9UGM3 2413 aaPredicted RBP3.94□□□□□ -1.78
SNX13-208ENST00000482558 A8MU10 97 aa3.94□□□□□ -1.78
SNX13-208ENST00000482558 HERC1Q15751 4861 aa3.92□□□□□ -1.78
SNX13-208ENST00000482558 LRP1Q07954 4544 aaKnown RBP3.92□□□□□ -1.78
SNX13-208ENST00000482558 P0C880 135 aa3.91□□□□□ -1.78
SNX13-208ENST00000482558 H1FX-AS1Q4G0G2 97 aa3.9□□□□□ -1.79
SNX13-208ENST00000482558 S4R3F8 94 aa3.89□□□□□ -1.79
SNX13-208ENST00000482558 LCE3AQ5TA76 89 aa3.87□□□□□ -1.79
SNX13-208ENST00000482558 H0YAA0 97 aa3.82□□□□□ -1.8
SNX13-208ENST00000482558 CSAG1Q6PB30 78 aa3.82□□□□□ -1.8
SNX13-208ENST00000482558 MYCBP2O75592 4640 aa3.81□□□□□ -1.8
SNX13-208ENST00000482558 M0QZ58 72 aa3.75□□□□□ -1.81
SNX13-208ENST00000482558 LRP2P98164 4655 aa3.69□□□□□ -1.82
SNX13-208ENST00000482558 MUC17Q685J3 4493 aa3.66□□□□□ -1.82
SNX13-208ENST00000482558 KRTAP13-4Q3LI77 160 aa3.65□□□□□ -1.83
SNX13-208ENST00000482558 HMCN2Q8NDA2 5059 aa3.63□□□□□ -1.83
SNX13-208ENST00000482558 A0A0D9SG42 100 aa3.63□□□□□ -1.83
SNX13-208ENST00000482558 LCE3EQ5T5B0 92 aa3.62□□□□□ -1.83
SNX13-208ENST00000482558 LPAP08519 4548 aa3.6□□□□□ -1.83
SNX13-208ENST00000482558 KRTAP12-1P59990 96 aa3.58□□□□□ -1.84
SNX13-208ENST00000482558 KRTAP5-5Q701N2 237 aaPredicted RBP3.58□□□□□ -1.84
SNX13-208ENST00000482558 CRIPTQ9P021 101 aa3.58□□□□□ -1.84
SNX13-208ENST00000482558 RNF213Q63HN8 5207 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms