RNA–Protein interactions for RNA: ENST00000482558.5

SNX13-208, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 1,139 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-208ENST00000482558 AEBP2Q6ZN18 517 aaPredicted RBP32■■■□□ 2.71
SNX13-208ENST00000482558 CHIC1Q5VXU3 224 aa30.19■■■□□ 2.42
SNX13-208ENST00000482558 SENP3Q9H4L4 574 aaPredicted RBP27.44■■□□□ 1.98
SNX13-208ENST00000482558 PHF23Q9BUL5 403 aaPredicted RBP26.98■■□□□ 1.91
SNX13-208ENST00000482558 FOXD1Q16676 465 aa25.53■■□□□ 1.68
SNX13-208ENST00000482558 MSH5O43196 834 aa24.1■■□□□ 1.45
SNX13-208ENST00000482558 PLPPR3Q6T4P5 718 aa24.02■■□□□ 1.44
SNX13-208ENST00000482558 POTEDQ86YR6 584 aa23.91■■□□□ 1.42
SNX13-208ENST00000482558 PIAS4Q8N2W9 510 aaPredicted RBP23.8■■□□□ 1.4
SNX13-208ENST00000482558 PPP6R1Q9UPN7 881 aa23.62■■□□□ 1.37
SNX13-208ENST00000482558 ADRA2BP18089 450 aa23.52■■□□□ 1.36
SNX13-208ENST00000482558 DMRT2Q9Y5R5 561 aa21.7■■□□□ 1.06
SNX13-208ENST00000482558 MAPK8IP2Q13387 824 aaPredicted RBP21.67■■□□□ 1.06
SNX13-208ENST00000482558 SCAF1Q9H7N4 1312 aaKnown RBP21.66■■□□□ 1.06
SNX13-208ENST00000482558 PPP4R3CPQ6ZMV5 832 aa20.96■□□□□ 0.95
SNX13-208ENST00000482558 HOXD11P31277 338 aaPredicted RBP20.81■□□□□ 0.92
SNX13-208ENST00000482558 CACNB1Q02641 598 aaPredicted RBP20.77■□□□□ 0.92
SNX13-208ENST00000482558 DCAF8L1A6NGE4 600 aa20.72■□□□□ 0.91
SNX13-208ENST00000482558 CNKSR2Q8WXI2 1034 aa20.69■□□□□ 0.9
SNX13-208ENST00000482558 RNF216Q9NWF9 866 aaPredicted RBP20.58■□□□□ 0.89
SNX13-208ENST00000482558 RNF39Q9H2S5 420 aa20.51■□□□□ 0.87
SNX13-208ENST00000482558 DNAJC5BQ9UF47 199 aa20.27■□□□□ 0.84
SNX13-208ENST00000482558 C1QBPQ07021 282 aaKnown RBP20.23■□□□□ 0.83
SNX13-208ENST00000482558 NCBP3Q53F19 620 aaKnown RBP20.14■□□□□ 0.81
SNX13-208ENST00000482558 NPM3O75607 178 aaKnown RBP19.78■□□□□ 0.76
SNX13-208ENST00000482558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.78■□□□□ 0.76
SNX13-208ENST00000482558 U3KPZ7 1027 aaPredicted RBP19.32■□□□□ 0.68
SNX13-208ENST00000482558 KCNA4P22459 653 aa19.12■□□□□ 0.65
SNX13-208ENST00000482558 CAPN15O75808 1086 aa19.09■□□□□ 0.65
SNX13-208ENST00000482558 SPINK5Q9NQ38 1064 aaPredicted RBP19.09■□□□□ 0.65
SNX13-208ENST00000482558 DSG3P32926 999 aa19.08■□□□□ 0.64
SNX13-208ENST00000482558 SLC4A2P04920 1241 aa18.96■□□□□ 0.63
SNX13-208ENST00000482558 APLP2Q06481 763 aa18.88■□□□□ 0.61
SNX13-208ENST00000482558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.79■□□□□ 0.6
SNX13-208ENST00000482558 HNRNPUL2Q1KMD3 747 aaKnown RBP18.79■□□□□ 0.6
SNX13-208ENST00000482558 ZNF219Q9P2Y4 722 aaPredicted RBP18.76■□□□□ 0.59
SNX13-208ENST00000482558 TRHP20396 242 aaPredicted RBP18.7■□□□□ 0.58
SNX13-208ENST00000482558 POTEHQ6S545 545 aa18.69■□□□□ 0.58
SNX13-208ENST00000482558 SAMD1Q6SPF0 538 aaPredicted RBP18.65■□□□□ 0.58
SNX13-208ENST00000482558 ABCB7O75027 752 aa18.57■□□□□ 0.56
SNX13-208ENST00000482558 MYCNP04198 464 aaPredicted RBP18.35■□□□□ 0.53
SNX13-208ENST00000482558 RBM42Q9BTD8 480 aaKnown RBP18.29■□□□□ 0.52
SNX13-208ENST00000482558 POLA2Q14181 598 aa18.16■□□□□ 0.5
SNX13-208ENST00000482558 SLC4A1APQ9BWU0 796 aaKnown RBP18.03■□□□□ 0.48
SNX13-208ENST00000482558 FOXD4L1Q9NU39 408 aa18■□□□□ 0.47
SNX13-208ENST00000482558 CHRDL2Q6WN34 429 aa17.94■□□□□ 0.46
SNX13-208ENST00000482558 ZBTB12Q9Y330 459 aaPredicted RBP17.89■□□□□ 0.45
SNX13-208ENST00000482558 ATF5Q9Y2D1 282 aaPredicted RBP17.84■□□□□ 0.45
SNX13-208ENST00000482558 AKT1S1Q96B36 256 aa17.79■□□□□ 0.44
SNX13-208ENST00000482558 REM2Q8IYK8 340 aaPredicted RBP17.57■□□□□ 0.4
SNX13-208ENST00000482558 OSCARQ8IYS5 282 aa17.57■□□□□ 0.4
SNX13-208ENST00000482558 ZBTB22O15209 634 aa17.56■□□□□ 0.4
SNX13-208ENST00000482558 ATXN8OSP0DMR3 200 aa17.55■□□□□ 0.4
SNX13-208ENST00000482558 PIP4P2Q8N4L2 257 aa17.42■□□□□ 0.38
SNX13-208ENST00000482558 SP7Q8TDD2 431 aaPredicted RBP17.41■□□□□ 0.38
SNX13-208ENST00000482558 PITPNM1O00562 1244 aa17.36■□□□□ 0.37
SNX13-208ENST00000482558 FXR2P51116 673 aaKnown RBP eCLIP17.31■□□□□ 0.36
SNX13-208ENST00000482558 SPDYE2BA6NHP3 402 aa17.28■□□□□ 0.36
SNX13-208ENST00000482558 SPDYE6P0CI01 402 aa17.28■□□□□ 0.36
SNX13-208ENST00000482558 SPDYE2Q495Y8 402 aa17.28■□□□□ 0.36
SNX13-208ENST00000482558 FBLN2P98095 1184 aa17.27■□□□□ 0.36
SNX13-208ENST00000482558 HAX1O00165 279 aa17.17■□□□□ 0.34
SNX13-208ENST00000482558 MKRN4PQ13434 485 aaPredicted RBP17.04■□□□□ 0.32
SNX13-208ENST00000482558 SPDYE1Q8NFV5 336 aaPredicted RBP17.03■□□□□ 0.32
SNX13-208ENST00000482558 SSUH2Q9Y2M2 353 aa17■□□□□ 0.31
SNX13-208ENST00000482558 ZNF692Q9BU19 519 aaPredicted RBP16.97■□□□□ 0.31
SNX13-208ENST00000482558 CLEC11AQ9Y240 323 aa16.92■□□□□ 0.3
SNX13-208ENST00000482558 PRKAR2AP13861 404 aaKnown RBP16.91■□□□□ 0.3
SNX13-208ENST00000482558 EVX2Q03828 476 aa16.89■□□□□ 0.29
SNX13-208ENST00000482558 EHMT2Q96KQ7 1210 aa16.78■□□□□ 0.28
SNX13-208ENST00000482558 C19orf67A6NJJ6 358 aa16.77■□□□□ 0.28
SNX13-208ENST00000482558 PABPN1Q86U42 306 aaKnown RBP eCLIP16.69■□□□□ 0.26
SNX13-208ENST00000482558 PRR29P0C7W0 189 aa16.66■□□□□ 0.26
SNX13-208ENST00000482558 CHADLQ6NUI6 762 aa16.6■□□□□ 0.25
SNX13-208ENST00000482558 GABBR2O75899 941 aa16.56■□□□□ 0.24
SNX13-208ENST00000482558 CSRNP3Q8WYN3 585 aa16.51■□□□□ 0.23
SNX13-208ENST00000482558 FARP1Q9Y4F1 1045 aaPredicted RBP16.41■□□□□ 0.22
SNX13-208ENST00000482558 CD44P16070 742 aaKnown RBP16.37■□□□□ 0.21
SNX13-208ENST00000482558 CLCN6P51797 869 aa16.37■□□□□ 0.21
SNX13-208ENST00000482558 LHX8Q68G74 356 aa16.31■□□□□ 0.2
SNX13-208ENST00000482558 STAG3Q9UJ98 1225 aa16.27■□□□□ 0.2
SNX13-208ENST00000482558 NISCHQ9Y2I1 1504 aa16.27■□□□□ 0.2
SNX13-208ENST00000482558 POTEIP0CG38 1075 aa16.18■□□□□ 0.18
SNX13-208ENST00000482558 CREBZFQ9NS37 354 aa16.17■□□□□ 0.18
SNX13-208ENST00000482558 ZNF579Q8NAF0 562 aaKnown RBP16.16■□□□□ 0.18
SNX13-208ENST00000482558 SPDYE4A6NLX3 237 aa16.12■□□□□ 0.17
SNX13-208ENST00000482558 ZRANB1Q9UGI0 708 aa16.08■□□□□ 0.16
SNX13-208ENST00000482558 DCBLD2Q96PD2 775 aa16.07■□□□□ 0.16
SNX13-208ENST00000482558 PAK3O75914 559 aaPredicted RBP15.95■□□□□ 0.14
SNX13-208ENST00000482558 NPM1P06748 294 aaKnown RBP eCLIP15.92■□□□□ 0.14
SNX13-208ENST00000482558 GALR2O43603 387 aaPredicted RBP15.89■□□□□ 0.13
SNX13-208ENST00000482558 MNX1P50219 401 aaPredicted RBP15.87■□□□□ 0.13
SNX13-208ENST00000482558 PHF12Q96QT6 1004 aa15.81■□□□□ 0.12
SNX13-208ENST00000482558 PROM2Q8N271 834 aa15.76■□□□□ 0.11
SNX13-208ENST00000482558 OTUD5Q96G74 571 aa15.65■□□□□ 0.1
SNX13-208ENST00000482558 POTEB2H3BUK9 544 aa15.62■□□□□ 0.09
SNX13-208ENST00000482558 ASTLQ6HA08 431 aaPredicted RBP15.62■□□□□ 0.09
SNX13-208ENST00000482558 PELP1Q8IZL8 1130 aaKnown RBP15.61■□□□□ 0.09
SNX13-208ENST00000482558 MS4A3Q96HJ5 214 aa15.61■□□□□ 0.09
SNX13-208ENST00000482558 ATMINO43313 823 aaPredicted RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms