RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 LAMA5O15230 3695 aa0.92□□□□□ -2.26
CCDC88A-210ENST00000468534 DNAH10Q8IVF4 4471 aa0.92□□□□□ -2.26
CCDC88A-210ENST00000468534 HECTD4Q9Y4D8 3996 aa0.92□□□□□ -2.26
CCDC88A-210ENST00000468534 SPG11Q96JI7 2443 aa0.91□□□□□ -2.26
CCDC88A-210ENST00000468534 FRYQ5TBA9 3013 aa0.91□□□□□ -2.26
CCDC88A-210ENST00000468534 RANBP2P49792 3224 aaKnown RBP0.91□□□□□ -2.26
CCDC88A-210ENST00000468534 COL7A1Q02388 2944 aa0.91□□□□□ -2.26
CCDC88A-210ENST00000468534 CELSR3Q9NYQ7 3312 aa0.9□□□□□ -2.26
CCDC88A-210ENST00000468534 DMXL1Q9Y485 3027 aa0.9□□□□□ -2.27
CCDC88A-210ENST00000468534 ZFYVE26Q68DK2 2539 aa0.9□□□□□ -2.27
CCDC88A-210ENST00000468534 DNAH6Q9C0G6 4158 aa0.9□□□□□ -2.27
CCDC88A-210ENST00000468534 DNAH9Q9NYC9 4486 aa0.9□□□□□ -2.27
CCDC88A-210ENST00000468534 LPAP08519 4548 aa0.89□□□□□ -2.27
CCDC88A-210ENST00000468534 LRP1Q07954 4544 aaKnown RBP0.89□□□□□ -2.27
CCDC88A-210ENST00000468534 SPRR2AP35326 72 aa0.89□□□□□ -2.27
CCDC88A-210ENST00000468534 APOBP04114 4563 aaKnown RBP0.89□□□□□ -2.27
CCDC88A-210ENST00000468534 RELNP78509 3460 aa0.89□□□□□ -2.27
CCDC88A-210ENST00000468534 UTP20O75691 2785 aaKnown RBP0.89□□□□□ -2.27
CCDC88A-210ENST00000468534 FLNBO75369 2602 aaKnown RBP0.88□□□□□ -2.27
CCDC88A-210ENST00000468534 FAT3Q8TDW7 4589 aa0.88□□□□□ -2.27
CCDC88A-210ENST00000468534 HIVEP1P15822 2718 aa0.87□□□□□ -2.27
CCDC88A-210ENST00000468534 NBEAL2Q6ZNJ1 2754 aa0.87□□□□□ -2.27
CCDC88A-210ENST00000468534 ZZEF1O43149 2961 aa0.87□□□□□ -2.27
CCDC88A-210ENST00000468534 ANKRD11Q6UB99 2663 aaPredicted RBP0.87□□□□□ -2.27
CCDC88A-210ENST00000468534 PLECQ15149 4684 aaKnown RBP0.86□□□□□ -2.27
CCDC88A-210ENST00000468534 FLGP20930 4061 aaPredicted RBP0.85□□□□□ -2.27
CCDC88A-210ENST00000468534 SPTBN5Q9NRC6 3674 aaKnown RBP0.84□□□□□ -2.27
CCDC88A-210ENST00000468534 CFAP54Q96N23 3096 aa0.84□□□□□ -2.28
CCDC88A-210ENST00000468534 DNAH1Q9P2D7 4330 aa0.84□□□□□ -2.28
CCDC88A-210ENST00000468534 CSMD1Q96PZ7 3565 aa0.83□□□□□ -2.28
CCDC88A-210ENST00000468534 TEP1Q99973 2627 aaKnown RBP0.83□□□□□ -2.28
CCDC88A-210ENST00000468534 TLN2Q9Y4G6 2542 aa0.82□□□□□ -2.28
CCDC88A-210ENST00000468534 SVEP1Q4LDE5 3571 aa0.82□□□□□ -2.28
CCDC88A-210ENST00000468534 SPRR2FQ96RM1 72 aa0.82□□□□□ -2.28
CCDC88A-210ENST00000468534 TENM3Q9P273 2699 aa0.82□□□□□ -2.28
CCDC88A-210ENST00000468534 ZANQ9Y493 2812 aa0.82□□□□□ -2.28
CCDC88A-210ENST00000468534 PKHD1P08F94 4074 aa0.81□□□□□ -2.28
CCDC88A-210ENST00000468534 FASNP49327 2511 aaKnown RBP0.81□□□□□ -2.28
CCDC88A-210ENST00000468534 HRNRQ86YZ3 2850 aaPredicted RBP0.81□□□□□ -2.28
CCDC88A-210ENST00000468534 SPRR2EP22531 72 aa0.8□□□□□ -2.28
CCDC88A-210ENST00000468534 MYO18BQ8IUG5 2567 aa0.8□□□□□ -2.28
CCDC88A-210ENST00000468534 AHNAKQ09666 5890 aaKnown RBP0.8□□□□□ -2.28
CCDC88A-210ENST00000468534 AHNAK2Q8IVF2 5795 aa0.79□□□□□ -2.28
CCDC88A-210ENST00000468534 FRYLO94915 3013 aa0.78□□□□□ -2.28
CCDC88A-210ENST00000468534 FAT1Q14517 4588 aa0.78□□□□□ -2.28
CCDC88A-210ENST00000468534 USP9XQ93008 2570 aaPredicted RBP0.78□□□□□ -2.28
CCDC88A-210ENST00000468534 NIPBLQ6KC79 2804 aaeCLIP0.78□□□□□ -2.28
CCDC88A-210ENST00000468534 DMXL2Q8TDJ6 3036 aa0.78□□□□□ -2.28
CCDC88A-210ENST00000468534 CMYA5Q8N3K9 4069 aa0.78□□□□□ -2.29
CCDC88A-210ENST00000468534 NBEAQ8NFP9 2946 aa0.78□□□□□ -2.29
CCDC88A-210ENST00000468534 FLNAP21333 2647 aaKnown RBP0.77□□□□□ -2.29
CCDC88A-210ENST00000468534 CD52P31358 61 aa0.77□□□□□ -2.29
CCDC88A-210ENST00000468534 WDR87Q6ZQQ6 2873 aa0.77□□□□□ -2.29
CCDC88A-210ENST00000468534 ATMQ13315 3056 aa0.76□□□□□ -2.29
CCDC88A-210ENST00000468534 ITPR1Q14643 2758 aa0.76□□□□□ -2.29
CCDC88A-210ENST00000468534 LRP1BQ9NZR2 4599 aa0.75□□□□□ -2.29
CCDC88A-210ENST00000468534 COL6A3P12111 3177 aa0.75□□□□□ -2.29
CCDC88A-210ENST00000468534 TRIOO75962 3097 aa0.75□□□□□ -2.29
CCDC88A-210ENST00000468534 SMG1Q96Q15 3661 aaKnown RBP0.75□□□□□ -2.29
CCDC88A-210ENST00000468534 MUC5BQ9HC84 5762 aaPredicted RBP0.74□□□□□ -2.29
CCDC88A-210ENST00000468534 SZT2Q5T011 3432 aa0.74□□□□□ -2.29
CCDC88A-210ENST00000468534 DNAH5Q8TE73 4624 aa0.73□□□□□ -2.29
CCDC88A-210ENST00000468534 TEX15Q9BXT5 2789 aa0.73□□□□□ -2.29
CCDC88A-210ENST00000468534 LAMA3Q16787 3333 aa0.72□□□□□ -2.29
CCDC88A-210ENST00000468534 MAST4O15021 2626 aa0.72□□□□□ -2.29
CCDC88A-210ENST00000468534 LAMA1P25391 3075 aa0.72□□□□□ -2.29
CCDC88A-210ENST00000468534 HERC1Q15751 4861 aa0.72□□□□□ -2.29
CCDC88A-210ENST00000468534 DNAH17Q9UFH2 4485 aa0.71□□□□□ -2.3
CCDC88A-210ENST00000468534 MGAM2Q2M2H8 2515 aa0.71□□□□□ -2.3
CCDC88A-210ENST00000468534 C5orf42Q9H799 3197 aa0.71□□□□□ -2.3
CCDC88A-210ENST00000468534 CFAP46Q8IYW2 2715 aa0.71□□□□□ -2.3
CCDC88A-210ENST00000468534 MXRA5Q9NR99 2828 aa0.7□□□□□ -2.3
CCDC88A-210ENST00000468534 TGP01266 2768 aa0.7□□□□□ -2.3
CCDC88A-210ENST00000468534 DNAH12Q6ZR08 3092 aa0.7□□□□□ -2.3
CCDC88A-210ENST00000468534 LRBAP50851 2863 aa0.7□□□□□ -2.3
CCDC88A-210ENST00000468534 KALRNO60229 2985 aa0.7□□□□□ -2.3
CCDC88A-210ENST00000468534 DMDP11532 3685 aa0.7□□□□□ -2.3
CCDC88A-210ENST00000468534 DOPEY1Q5JWR5 2465 aa0.7□□□□□ -2.3
CCDC88A-210ENST00000468534 HTN3P15516 51 aa0.69□□□□□ -2.3
CCDC88A-210ENST00000468534 DYNC1H1Q14204 4646 aaKnown RBP0.69□□□□□ -2.3
CCDC88A-210ENST00000468534 MKI67P46013 3256 aaKnown RBP0.69□□□□□ -2.3
CCDC88A-210ENST00000468534 MT1EP04732 61 aa0.68□□□□□ -2.3
CCDC88A-210ENST00000468534 PRUNE2Q8WUY3 3088 aa0.68□□□□□ -2.3
CCDC88A-210ENST00000468534 ITPR2Q14571 2701 aa0.68□□□□□ -2.3
CCDC88A-210ENST00000468534 TRRAPQ9Y4A5 3859 aa0.68□□□□□ -2.3
CCDC88A-210ENST00000468534 HTTP42858 3142 aa0.67□□□□□ -2.3
CCDC88A-210ENST00000468534 MAP1AP78559 2803 aaPredicted RBP0.66□□□□□ -2.3
CCDC88A-210ENST00000468534 NBEAL1Q6ZS30 2694 aa0.66□□□□□ -2.3
CCDC88A-210ENST00000468534 MUC17Q685J3 4493 aa0.66□□□□□ -2.3
CCDC88A-210ENST00000468534 ADGRG4Q8IZF6 3080 aa0.65□□□□□ -2.31
CCDC88A-210ENST00000468534 SPTAN1Q13813 2472 aaKnown RBP0.64□□□□□ -2.31
CCDC88A-210ENST00000468534 MT1HP80294 61 aa0.64□□□□□ -2.31
CCDC88A-210ENST00000468534 BOD1L1Q8NFC6 3051 aa0.64□□□□□ -2.31
CCDC88A-210ENST00000468534 IGSF10Q6WRI0 2623 aa0.64□□□□□ -2.31
CCDC88A-210ENST00000468534 MT1LQ93083 61 aa0.62□□□□□ -2.31
CCDC88A-210ENST00000468534 HMCN2Q8NDA2 5059 aa0.62□□□□□ -2.31
CCDC88A-210ENST00000468534 CSMD2Q7Z408 3487 aa0.62□□□□□ -2.31
CCDC88A-210ENST00000468534 MUC5ACP98088 5654 aa0.61□□□□□ -2.31
CCDC88A-210ENST00000468534 FREM2Q5SZK8 3169 aa0.61□□□□□ -2.31
CCDC88A-210ENST00000468534 DEFB4AO15263 64 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 190.6 ms