RNA–Protein interactions for RNA: ENST00000452483.1

HMGB3P21-201, Transcript of high mobility group box 3 pseudogene 21, humanhuman

BASIC

Gene HMGB3P21, Length 547 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P21-201ENST00000452483 MXRA5Q9NR99 2828 aa1.02□□□□□ -2.25
HMGB3P21-201ENST00000452483 TEX15Q9BXT5 2789 aa1.02□□□□□ -2.25
HMGB3P21-201ENST00000452483 MKI67P46013 3256 aaKnown RBP1.01□□□□□ -2.25
HMGB3P21-201ENST00000452483 SPEGQ15772 3267 aa1.01□□□□□ -2.25
HMGB3P21-201ENST00000452483 DCHS1Q96JQ0 3298 aa1.01□□□□□ -2.25
HMGB3P21-201ENST00000452483 CEP250Q9BV73 2442 aa1.01□□□□□ -2.25
HMGB3P21-201ENST00000452483 WNK1Q9H4A3 2382 aa1.01□□□□□ -2.25
HMGB3P21-201ENST00000452483 CFAP54Q96N23 3096 aa1□□□□□ -2.25
HMGB3P21-201ENST00000452483 K7EIM0 57 aa1□□□□□ -2.25
HMGB3P21-201ENST00000452483 TLN1Q9Y490 2541 aaKnown RBP0.99□□□□□ -2.25
HMGB3P21-201ENST00000452483 CHD7Q9P2D1 2997 aa0.99□□□□□ -2.25
HMGB3P21-201ENST00000452483 KRTAP20-1Q3LI63 56 aa0.99□□□□□ -2.25
HMGB3P21-201ENST00000452483 C5orf42Q9H799 3197 aa0.98□□□□□ -2.25
HMGB3P21-201ENST00000452483 RELNP78509 3460 aa0.98□□□□□ -2.25
HMGB3P21-201ENST00000452483 BRCA2P51587 3418 aa0.98□□□□□ -2.25
HMGB3P21-201ENST00000452483 RIF1Q5UIP0 2472 aaKnown RBP0.98□□□□□ -2.25
HMGB3P21-201ENST00000452483 TLN2Q9Y4G6 2542 aa0.97□□□□□ -2.25
HMGB3P21-201ENST00000452483 SPART-AS1P0CW21 52 aa0.97□□□□□ -2.25
HMGB3P21-201ENST00000452483 DEFB110Q30KQ9 67 aa0.97□□□□□ -2.25
HMGB3P21-201ENST00000452483 TENM3Q9P273 2699 aa0.97□□□□□ -2.25
HMGB3P21-201ENST00000452483 MDN1Q9NU22 5596 aa0.97□□□□□ -2.25
HMGB3P21-201ENST00000452483 DMBT1Q9UGM3 2413 aaPredicted RBP0.96□□□□□ -2.26
HMGB3P21-201ENST00000452483 USP34Q70CQ2 3546 aa0.96□□□□□ -2.26
HMGB3P21-201ENST00000452483 CENPFP49454 3210 aa0.96□□□□□ -2.26
HMGB3P21-201ENST00000452483 VPS13BQ7Z7G8 4022 aa0.96□□□□□ -2.26
HMGB3P21-201ENST00000452483 HTTP42858 3142 aa0.95□□□□□ -2.26
HMGB3P21-201ENST00000452483 TMEM167AQ8TBQ9 72 aa0.95□□□□□ -2.26
HMGB3P21-201ENST00000452483 PRUNE2Q8WUY3 3088 aa0.95□□□□□ -2.26
HMGB3P21-201ENST00000452483 MGAM2Q2M2H8 2515 aa0.95□□□□□ -2.26
HMGB3P21-201ENST00000452483 LAMA3Q16787 3333 aa0.94□□□□□ -2.26
HMGB3P21-201ENST00000452483 RNF213Q63HN8 5207 aa0.94□□□□□ -2.26
HMGB3P21-201ENST00000452483 MUC5ACP98088 5654 aa0.94□□□□□ -2.26
HMGB3P21-201ENST00000452483 KMT2AQ03164 3969 aa0.94□□□□□ -2.26
HMGB3P21-201ENST00000452483 NBEAQ8NFP9 2946 aa0.93□□□□□ -2.26
HMGB3P21-201ENST00000452483 ACANP16112 2415 aa0.93□□□□□ -2.26
HMGB3P21-201ENST00000452483 NF1P21359 2839 aa0.93□□□□□ -2.26
HMGB3P21-201ENST00000452483 MTORP42345 2549 aa0.93□□□□□ -2.26
HMGB3P21-201ENST00000452483 ACACAQ13085 2346 aa0.93□□□□□ -2.26
HMGB3P21-201ENST00000452483 ASPMQ8IZT6 3477 aa0.92□□□□□ -2.26
HMGB3P21-201ENST00000452483 HUWE1Q7Z6Z7 4374 aaKnown RBP0.92□□□□□ -2.26
HMGB3P21-201ENST00000452483 APC2O95996 2303 aa0.91□□□□□ -2.26
HMGB3P21-201ENST00000452483 DNAH11Q96DT5 4516 aa0.91□□□□□ -2.26
HMGB3P21-201ENST00000452483 SACSQ9NZJ4 4579 aa0.91□□□□□ -2.26
HMGB3P21-201ENST00000452483 TGP01266 2768 aa0.91□□□□□ -2.26
HMGB3P21-201ENST00000452483 XIRP2A4UGR9 3374 aa0.9□□□□□ -2.27
HMGB3P21-201ENST00000452483 NIPBLQ6KC79 2804 aaeCLIP0.9□□□□□ -2.27
HMGB3P21-201ENST00000452483 FRYQ5TBA9 3013 aa0.9□□□□□ -2.27
HMGB3P21-201ENST00000452483 FAM186AA6NE01 2351 aa0.9□□□□□ -2.27
HMGB3P21-201ENST00000452483 HERC2O95714 4834 aa0.89□□□□□ -2.27
HMGB3P21-201ENST00000452483 COL12A1Q99715 3063 aa0.88□□□□□ -2.27
HMGB3P21-201ENST00000452483 ZZEF1O43149 2961 aa0.88□□□□□ -2.27
HMGB3P21-201ENST00000452483 DNAH14Q0VDD8 3507 aa0.88□□□□□ -2.27
HMGB3P21-201ENST00000452483 CDH23Q9H251 3354 aa0.88□□□□□ -2.27
HMGB3P21-201ENST00000452483 HIVEP1P15822 2718 aa0.88□□□□□ -2.27
HMGB3P21-201ENST00000452483 HMCN2Q8NDA2 5059 aa0.87□□□□□ -2.27
HMGB3P21-201ENST00000452483 RPL39P5Q59GN2 51 aa0.87□□□□□ -2.27
HMGB3P21-201ENST00000452483 KRTAP5-10Q6L8G5 202 aa0.87□□□□□ -2.27
HMGB3P21-201ENST00000452483 ITPR2Q14571 2701 aa0.86□□□□□ -2.27
HMGB3P21-201ENST00000452483 SPRR2DP22532 72 aa0.86□□□□□ -2.27
HMGB3P21-201ENST00000452483 VPS13DQ5THJ4 4388 aa0.86□□□□□ -2.27
HMGB3P21-201ENST00000452483 LOC400499M0QZD8 3231 aa0.86□□□□□ -2.27
HMGB3P21-201ENST00000452483 SMG1Q96Q15 3661 aaKnown RBP0.86□□□□□ -2.27
HMGB3P21-201ENST00000452483 DMXL1Q9Y485 3027 aa0.85□□□□□ -2.27
HMGB3P21-201ENST00000452483 DNAH3Q8TD57 4116 aa0.85□□□□□ -2.27
HMGB3P21-201ENST00000452483 VPS13AQ96RL7 3174 aa0.85□□□□□ -2.27
HMGB3P21-201ENST00000452483 MYCBP2O75592 4640 aa0.85□□□□□ -2.27
HMGB3P21-201ENST00000452483 CRYBG3Q68DQ2 2970 aa0.84□□□□□ -2.27
HMGB3P21-201ENST00000452483 LRBAP50851 2863 aa0.84□□□□□ -2.27
HMGB3P21-201ENST00000452483 COL7A1Q02388 2944 aa0.84□□□□□ -2.27
HMGB3P21-201ENST00000452483 DCHS2Q6V1P9 2916 aa0.84□□□□□ -2.28
HMGB3P21-201ENST00000452483 SPENQ96T58 3664 aaKnown RBP0.82□□□□□ -2.28
HMGB3P21-201ENST00000452483 HECTD4Q9Y4D8 3996 aa0.82□□□□□ -2.28
HMGB3P21-201ENST00000452483 WDR87Q6ZQQ6 2873 aa0.82□□□□□ -2.28
HMGB3P21-201ENST00000452483 DEFB108AA8MXU0 73 aa0.82□□□□□ -2.28
HMGB3P21-201ENST00000452483 KRTAP21-1Q3LI58 79 aa0.82□□□□□ -2.28
HMGB3P21-201ENST00000452483 PKD1P98161 4303 aa0.82□□□□□ -2.28
HMGB3P21-201ENST00000452483 TACC2O95359 2948 aa0.82□□□□□ -2.28
HMGB3P21-201ENST00000452483 FREM2Q5SZK8 3169 aa0.82□□□□□ -2.28
HMGB3P21-201ENST00000452483 CUBNO60494 3623 aa0.81□□□□□ -2.28
HMGB3P21-201ENST00000452483 SYNE1Q8NF91 8797 aaKnown RBP0.81□□□□□ -2.28
HMGB3P21-201ENST00000452483 SPRR2BP35325 72 aa0.81□□□□□ -2.28
HMGB3P21-201ENST00000452483 FRYLO94915 3013 aa0.81□□□□□ -2.28
HMGB3P21-201ENST00000452483 RHPN1-AS1Q9BWJ2 59 aa0.8□□□□□ -2.28
HMGB3P21-201ENST00000452483 MYO15AQ9UKN7 3530 aa0.8□□□□□ -2.28
HMGB3P21-201ENST00000452483 WDFY3Q8IZQ1 3526 aa0.8□□□□□ -2.28
HMGB3P21-201ENST00000452483 NBPF19A0A087WUL8 3843 aa0.79□□□□□ -2.28
HMGB3P21-201ENST00000452483 DYNC2H1Q8NCM8 4307 aaKnown RBP0.79□□□□□ -2.28
HMGB3P21-201ENST00000452483 ANK3Q12955 4377 aaKnown RBP0.79□□□□□ -2.28
HMGB3P21-201ENST00000452483 PKHD1L1Q86WI1 4243 aa0.79□□□□□ -2.28
HMGB3P21-201ENST00000452483 DNAH2Q9P225 4427 aa0.79□□□□□ -2.28
HMGB3P21-201ENST00000452483 TRIOO75962 3097 aa0.78□□□□□ -2.28
HMGB3P21-201ENST00000452483 LRP1Q07954 4544 aaKnown RBP0.78□□□□□ -2.28
HMGB3P21-201ENST00000452483 LPAP08519 4548 aa0.77□□□□□ -2.29
HMGB3P21-201ENST00000452483 DMXL2Q8TDJ6 3036 aa0.77□□□□□ -2.29
HMGB3P21-201ENST00000452483 H3BUX3 64 aa0.77□□□□□ -2.29
HMGB3P21-201ENST00000452483 KRTAP8-1Q8IUC2 63 aa0.77□□□□□ -2.29
HMGB3P21-201ENST00000452483 DNAH7Q8WXX0 4024 aa0.76□□□□□ -2.29
HMGB3P21-201ENST00000452483 HSPG2P98160 4391 aa0.76□□□□□ -2.29
HMGB3P21-201ENST00000452483 ADGRG4Q8IZF6 3080 aa0.76□□□□□ -2.29
HMGB3P21-201ENST00000452483 MGAQ8IWI9 3026 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms