RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 PRKDCP78527 4128 aaKnown RBP5.85□□□□□ -1.47
TCOF1-205ENST00000439160 KRTAP13-4Q3LI77 160 aa5.85□□□□□ -1.47
TCOF1-205ENST00000439160 KRTAP12-1P59990 96 aa5.84□□□□□ -1.47
TCOF1-205ENST00000439160 VPS13DQ5THJ4 4388 aa5.81□□□□□ -1.48
TCOF1-205ENST00000439160 FAT1Q14517 4588 aa5.81□□□□□ -1.48
TCOF1-205ENST00000439160 ALMS1Q8TCU4 4167 aa5.81□□□□□ -1.48
TCOF1-205ENST00000439160 PRO2289Q9P1D8 64 aa5.78□□□□□ -1.48
TCOF1-205ENST00000439160 DYNC1H1Q14204 4646 aaKnown RBP5.76□□□□□ -1.49
TCOF1-205ENST00000439160 KRTAP3-3Q9BYR6 98 aa5.76□□□□□ -1.49
TCOF1-205ENST00000439160 LRP1BQ9NZR2 4599 aa5.73□□□□□ -1.49
TCOF1-205ENST00000439160 DNAH17Q9UFH2 4485 aa5.73□□□□□ -1.49
TCOF1-205ENST00000439160 KRTAP3-2Q9BYR7 98 aa5.7□□□□□ -1.5
TCOF1-205ENST00000439160 RYR1P21817 5038 aa5.7□□□□□ -1.5
TCOF1-205ENST00000439160 CMYA5Q8N3K9 4069 aa5.67□□□□□ -1.5
TCOF1-205ENST00000439160 KMT2AQ03164 3969 aa5.67□□□□□ -1.5
TCOF1-205ENST00000439160 DNAH2Q9P225 4427 aa5.65□□□□□ -1.5
TCOF1-205ENST00000439160 KIAA1109Q2LD37 5005 aa5.63□□□□□ -1.51
TCOF1-205ENST00000439160 DNAH7Q8WXX0 4024 aa5.63□□□□□ -1.51
TCOF1-205ENST00000439160 DNAH8Q96JB1 4490 aa5.62□□□□□ -1.51
TCOF1-205ENST00000439160 SACSQ9NZJ4 4579 aa5.54□□□□□ -1.52
TCOF1-205ENST00000439160 KMT2CQ8NEZ4 4911 aaKnown RBP5.53□□□□□ -1.52
TCOF1-205ENST00000439160 MYCBP2O75592 4640 aa5.52□□□□□ -1.52
TCOF1-205ENST00000439160 RYR3Q15413 4870 aa5.52□□□□□ -1.53
TCOF1-205ENST00000439160 DNAH3Q8TD57 4116 aa5.51□□□□□ -1.53
TCOF1-205ENST00000439160 DYNC2H1Q8NCM8 4307 aaKnown RBP5.51□□□□□ -1.53
TCOF1-205ENST00000439160 FAT2Q9NYQ8 4349 aa5.5□□□□□ -1.53
TCOF1-205ENST00000439160 VPS13BQ7Z7G8 4022 aa5.48□□□□□ -1.53
TCOF1-205ENST00000439160 HYDINQ4G0P3 5121 aa5.48□□□□□ -1.53
TCOF1-205ENST00000439160 LORP23490 312 aaPredicted RBP5.47□□□□□ -1.53
TCOF1-205ENST00000439160 FRAS1Q86XX4 4008 aa5.47□□□□□ -1.53
TCOF1-205ENST00000439160 KRTAP15-1Q3LI76 137 aa5.46□□□□□ -1.53
TCOF1-205ENST00000439160 KRTAP4-1Q9BYQ7 146 aa5.46□□□□□ -1.54
TCOF1-205ENST00000439160 APOBP04114 4563 aaKnown RBP5.41□□□□□ -1.54
TCOF1-205ENST00000439160 LRP1Q07954 4544 aaKnown RBP5.4□□□□□ -1.55
TCOF1-205ENST00000439160 DNAH6Q9C0G6 4158 aa5.38□□□□□ -1.55
TCOF1-205ENST00000439160 KRTAP17-1Q9BYP8 105 aa5.38□□□□□ -1.55
TCOF1-205ENST00000439160 FAT3Q8TDW7 4589 aa5.37□□□□□ -1.55
TCOF1-205ENST00000439160 PKHD1P08F94 4074 aa5.36□□□□□ -1.55
TCOF1-205ENST00000439160 RYR2Q92736 4967 aa5.32□□□□□ -1.56
TCOF1-205ENST00000439160 HECTD4Q9Y4D8 3996 aa5.28□□□□□ -1.56
TCOF1-205ENST00000439160 KRTAP10-12P60413 245 aa5.27□□□□□ -1.57
TCOF1-205ENST00000439160 HERC2O95714 4834 aa5.25□□□□□ -1.57
TCOF1-205ENST00000439160 MT1HP80294 61 aa5.21□□□□□ -1.58
TCOF1-205ENST00000439160 EPPK1P58107 5090 aaKnown RBP5.19□□□□□ -1.58
TCOF1-205ENST00000439160 LRP2P98164 4655 aa5.17□□□□□ -1.58
TCOF1-205ENST00000439160 LCE3AQ5TA76 89 aa5.15□□□□□ -1.59
TCOF1-205ENST00000439160 KRTAP12-3P60328 96 aa5.13□□□□□ -1.59
TCOF1-205ENST00000439160 MT2AP02795 61 aa5.13□□□□□ -1.59
TCOF1-205ENST00000439160 HSPG2P98160 4391 aa5.07□□□□□ -1.6
TCOF1-205ENST00000439160 MT1FP04733 61 aa5.06□□□□□ -1.6
TCOF1-205ENST00000439160 BIRC6Q9NR09 4857 aa5.06□□□□□ -1.6
TCOF1-205ENST00000439160 SPRR2GQ9BYE4 73 aa5.04□□□□□ -1.6
TCOF1-205ENST00000439160 KRTAP23-1A1A580 65 aa5.03□□□□□ -1.6
TCOF1-205ENST00000439160 CRCT1Q9UGL9 99 aa5.01□□□□□ -1.61
TCOF1-205ENST00000439160 PKD1P98161 4303 aa4.99□□□□□ -1.61
TCOF1-205ENST00000439160 PCLOQ9Y6V0 5065 aa4.98□□□□□ -1.61
TCOF1-205ENST00000439160 LPAP08519 4548 aa4.9□□□□□ -1.62
TCOF1-205ENST00000439160 HERC1Q15751 4861 aa4.89□□□□□ -1.63
TCOF1-205ENST00000439160 KRTAP8-1Q8IUC2 63 aa4.89□□□□□ -1.63
TCOF1-205ENST00000439160 ABCA13Q86UQ4 5058 aa4.88□□□□□ -1.63
TCOF1-205ENST00000439160 KRTAP19-1Q8IUB9 90 aa4.86□□□□□ -1.63
TCOF1-205ENST00000439160 MUC2Q02817 5179 aa4.86□□□□□ -1.63
TCOF1-205ENST00000439160 RNF213Q63HN8 5207 aa4.83□□□□□ -1.64
TCOF1-205ENST00000439160 INE1O15225 51 aa4.83□□□□□ -1.64
TCOF1-205ENST00000439160 LCE2CQ5TA81 110 aa4.78□□□□□ -1.64
TCOF1-205ENST00000439160 KRTAP9-8Q9BYQ0 159 aa4.74□□□□□ -1.65
TCOF1-205ENST00000439160 KRTAP19-8Q3LI54 63 aa4.73□□□□□ -1.65
TCOF1-205ENST00000439160 TNXBP22105 4242 aa4.72□□□□□ -1.65
TCOF1-205ENST00000439160 UBR4Q5T4S7 5183 aa4.72□□□□□ -1.65
TCOF1-205ENST00000439160 KRTAP19-5Q3LI72 72 aa4.7□□□□□ -1.66
TCOF1-205ENST00000439160 PKHD1L1Q86WI1 4243 aa4.68□□□□□ -1.66
TCOF1-205ENST00000439160 KRTAP10-7P60409 375 aaPredicted RBP4.67□□□□□ -1.66
TCOF1-205ENST00000439160 MT1BP07438 61 aa4.66□□□□□ -1.66
TCOF1-205ENST00000439160 KRTAP19-2Q3LHN2 52 aa4.65□□□□□ -1.66
TCOF1-205ENST00000439160 MT1XP80297 61 aa4.64□□□□□ -1.67
TCOF1-205ENST00000439160 SPRR2FQ96RM1 72 aa4.62□□□□□ -1.67
TCOF1-205ENST00000439160 FAT4Q6V0I7 4981 aa4.61□□□□□ -1.67
TCOF1-205ENST00000439160 MUC17Q685J3 4493 aa4.61□□□□□ -1.67
TCOF1-205ENST00000439160 KRTAP10-5P60370 271 aa4.59□□□□□ -1.67
TCOF1-205ENST00000439160 KRTAP9-3Q9BYQ3 159 aa4.59□□□□□ -1.67
TCOF1-205ENST00000439160 FSIP2Q5CZC0 6907 aa4.59□□□□□ -1.68
TCOF1-205ENST00000439160 LCE3CQ5T5A8 94 aa4.53□□□□□ -1.68
TCOF1-205ENST00000439160 FLGP20930 4061 aaPredicted RBP4.53□□□□□ -1.68
TCOF1-205ENST00000439160 KRTAP4-8A0A0G2JLE6 195 aa4.5□□□□□ -1.69
TCOF1-205ENST00000439160 KRTAP4-8Q9BYQ9 185 aa4.5□□□□□ -1.69
TCOF1-205ENST00000439160 LCE2BO14633 110 aa4.45□□□□□ -1.7
TCOF1-205ENST00000439160 HMCN2Q8NDA2 5059 aa4.42□□□□□ -1.7
TCOF1-205ENST00000439160 SPRR5A0A1B0GTR4 108 aa4.38□□□□□ -1.71
TCOF1-205ENST00000439160 KRTAP19-4Q3LI73 84 aa4.32□□□□□ -1.72
TCOF1-205ENST00000439160 SPRR2EP22531 72 aa4.27□□□□□ -1.73
TCOF1-205ENST00000439160 SPRR2BP35325 72 aa4.27□□□□□ -1.73
TCOF1-205ENST00000439160 SPRR2AP35326 72 aa4.27□□□□□ -1.73
TCOF1-205ENST00000439160 MT1GP13640 62 aa4.25□□□□□ -1.73
TCOF1-205ENST00000439160 LCE2AQ5TA79 106 aaPredicted RBP4.24□□□□□ -1.73
TCOF1-205ENST00000439160 SYNE1Q8NF91 8797 aaKnown RBP4.24□□□□□ -1.73
TCOF1-205ENST00000439160 USH2AO75445 5202 aa4.22□□□□□ -1.73
TCOF1-205ENST00000439160 KRTAP4-7Q9BYR0 210 aa4.2□□□□□ -1.74
TCOF1-205ENST00000439160 LCE3BQ5TA77 95 aa4.14□□□□□ -1.75
TCOF1-205ENST00000439160 MT1EP04732 61 aa4.13□□□□□ -1.75
TCOF1-205ENST00000439160 MT1LQ93083 61 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms