RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 NISCHQ9Y2I1 1504 aa22.42■■□□□ 1.18
TCOF1-205ENST00000439160 DCAF8L2P0C7V8 631 aa22.13■■□□□ 1.13
TCOF1-205ENST00000439160 SUPT5HO00267 1087 aaKnown RBP21.06■□□□□ 0.96
TCOF1-205ENST00000439160 SHROOM4Q9ULL8 1493 aa21■□□□□ 0.95
TCOF1-205ENST00000439160 EHMT2Q96KQ7 1210 aa20.12■□□□□ 0.81
TCOF1-205ENST00000439160 FAM9AQ8IZU1 332 aaPredicted RBP19.77■□□□□ 0.76
TCOF1-205ENST00000439160 TRIM41Q8WV44 630 aa19.48■□□□□ 0.71
TCOF1-205ENST00000439160 TTBK1Q5TCY1 1321 aaPredicted RBP19.37■□□□□ 0.69
TCOF1-205ENST00000439160 APLP2Q06481 763 aa19.35■□□□□ 0.69
TCOF1-205ENST00000439160 PCGF6Q9BYE7 350 aa19.34■□□□□ 0.69
TCOF1-205ENST00000439160 RANGAP1P46060 587 aaPredicted RBP19.28■□□□□ 0.68
TCOF1-205ENST00000439160 ABCC9O60706 1549 aa19.18■□□□□ 0.66
TCOF1-205ENST00000439160 UBTFP17480 764 aaKnown RBP19.1■□□□□ 0.65
TCOF1-205ENST00000439160 CHIC1Q5VXU3 224 aa19.03■□□□□ 0.64
TCOF1-205ENST00000439160 PABPN1Q86U42 306 aaKnown RBP eCLIP18.93■□□□□ 0.62
TCOF1-205ENST00000439160 ATP1B4Q9UN42 357 aaPredicted RBP18.93■□□□□ 0.62
TCOF1-205ENST00000439160 LOC105371045A0A1W2PR82 267 aa18.92■□□□□ 0.62
TCOF1-205ENST00000439160 PPARGC1BQ86YN6 1023 aaKnown RBP18.91■□□□□ 0.62
TCOF1-205ENST00000439160 CCER1Q8TC90 406 aaPredicted RBP18.8■□□□□ 0.6
TCOF1-205ENST00000439160 ZEB1P37275 1124 aaPredicted RBP18.64■□□□□ 0.57
TCOF1-205ENST00000439160 ZCCHC6Q5VYS8 1495 aaKnown RBP18.61■□□□□ 0.57
TCOF1-205ENST00000439160 TRIM26Q12899 539 aaPredicted RBP18.6■□□□□ 0.57
TCOF1-205ENST00000439160 CCDC180Q9P1Z9 1646 aa18.43■□□□□ 0.54
TCOF1-205ENST00000439160 ITGAEP38570 1179 aa18.42■□□□□ 0.54
TCOF1-205ENST00000439160 SCRIBQ14160 1630 aa18.41■□□□□ 0.54
TCOF1-205ENST00000439160 HRCP23327 699 aa18.4■□□□□ 0.54
TCOF1-205ENST00000439160 HNRNPUL2Q1KMD3 747 aaKnown RBP18.35■□□□□ 0.53
TCOF1-205ENST00000439160 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.32■□□□□ 0.52
TCOF1-205ENST00000439160 PELP1Q8IZL8 1130 aaKnown RBP18.26■□□□□ 0.51
TCOF1-205ENST00000439160 CENPBP07199 599 aaPredicted RBP18.22■□□□□ 0.51
TCOF1-205ENST00000439160 YTHDC1Q96MU7 727 aaKnown RBP18.15■□□□□ 0.5
TCOF1-205ENST00000439160 CSRNP3Q8WYN3 585 aa18.09■□□□□ 0.49
TCOF1-205ENST00000439160 MYT1LQ9UL68 1186 aa18.01■□□□□ 0.47
TCOF1-205ENST00000439160 FAM50AQ14320 339 aaKnown RBP17.99■□□□□ 0.47
TCOF1-205ENST00000439160 FBLN2P98095 1184 aa17.94■□□□□ 0.46
TCOF1-205ENST00000439160 RB1CC1Q8TDY2 1594 aa17.93■□□□□ 0.46
TCOF1-205ENST00000439160 P3H3Q8IVL6 736 aa17.93■□□□□ 0.46
TCOF1-205ENST00000439160 RSF1Q96T23 1441 aaPredicted RBP17.93■□□□□ 0.46
TCOF1-205ENST00000439160 POLR3GLQ9BT43 218 aa17.87■□□□□ 0.45
TCOF1-205ENST00000439160 NACADO15069 1562 aa17.85■□□□□ 0.45
TCOF1-205ENST00000439160 ARID3CA6NKF2 412 aa17.8■□□□□ 0.44
TCOF1-205ENST00000439160 CNGB1Q14028 1251 aaPredicted RBP17.79■□□□□ 0.44
TCOF1-205ENST00000439160 NEFLP07196 543 aa17.76■□□□□ 0.43
TCOF1-205ENST00000439160 TRIM52Q96A61 297 aa17.76■□□□□ 0.43
TCOF1-205ENST00000439160 NEUROD1Q13562 356 aa17.75■□□□□ 0.43
TCOF1-205ENST00000439160 DIEXFQ68CQ4 756 aaKnown RBP17.74■□□□□ 0.43
TCOF1-205ENST00000439160 DCAF1Q9Y4B6 1507 aa17.74■□□□□ 0.43
TCOF1-205ENST00000439160 CECR2Q9BXF3 1484 aa17.7■□□□□ 0.42
TCOF1-205ENST00000439160 MYO15BQ96JP2 1530 aa17.69■□□□□ 0.42
TCOF1-205ENST00000439160 BAZ1BQ9UIG0 1483 aaKnown RBP17.56■□□□□ 0.4
TCOF1-205ENST00000439160 ZNF326Q5BKZ1 582 aaKnown RBP17.52■□□□□ 0.4
TCOF1-205ENST00000439160 BAZ1AQ9NRL2 1556 aaPredicted RBP17.52■□□□□ 0.4
TCOF1-205ENST00000439160 ZNF777Q9ULD5 760 aaPredicted RBP17.52■□□□□ 0.4
TCOF1-205ENST00000439160 WRNQ14191 1432 aaPredicted RBP eCLIP17.51■□□□□ 0.39
TCOF1-205ENST00000439160 ERICH6Q7L0X2 663 aa17.5■□□□□ 0.39
TCOF1-205ENST00000439160 ZNF316A6NFI3 1004 aaPredicted RBP17.45■□□□□ 0.38
TCOF1-205ENST00000439160 CDK11AQ9UQ88 783 aaPredicted RBP17.45■□□□□ 0.38
TCOF1-205ENST00000439160 CLIP1P30622 1438 aa17.45■□□□□ 0.38
TCOF1-205ENST00000439160 MROH2BQ7Z745 1585 aa17.44■□□□□ 0.38
TCOF1-205ENST00000439160 SLC4A1APQ9BWU0 796 aaKnown RBP17.44■□□□□ 0.38
TCOF1-205ENST00000439160 EEA1Q15075 1411 aa17.37■□□□□ 0.37
TCOF1-205ENST00000439160 CEP162Q5TB80 1403 aa17.37■□□□□ 0.37
TCOF1-205ENST00000439160 MYT1Q01538 1121 aa17.35■□□□□ 0.37
TCOF1-205ENST00000439160 GTF3C3Q9Y5Q9 886 aa17.35■□□□□ 0.37
TCOF1-205ENST00000439160 GOLGA3Q08378 1498 aa17.34■□□□□ 0.37
TCOF1-205ENST00000439160 CHMP7Q8WUX9 453 aaPredicted RBP17.34■□□□□ 0.37
TCOF1-205ENST00000439160 CHIC2Q9UKJ5 165 aa17.33■□□□□ 0.36
TCOF1-205ENST00000439160 ANP32CO43423 234 aa17.3■□□□□ 0.36
TCOF1-205ENST00000439160 KIF27Q86VH2 1401 aa17.28■□□□□ 0.36
TCOF1-205ENST00000439160 MTUS2Q5JR59 1369 aa17.28■□□□□ 0.36
TCOF1-205ENST00000439160 CCDC88BA6NC98 1476 aa17.27■□□□□ 0.36
TCOF1-205ENST00000439160 SOGA1O94964 1423 aa17.26■□□□□ 0.35
TCOF1-205ENST00000439160 TNIKQ9UKE5 1360 aa17.25■□□□□ 0.35
TCOF1-205ENST00000439160 CEP164Q9UPV0 1460 aa17.21■□□□□ 0.35
TCOF1-205ENST00000439160 TONSLQ96HA7 1378 aa17.19■□□□□ 0.34
TCOF1-205ENST00000439160 ABCC8Q09428 1581 aa17.18■□□□□ 0.34
TCOF1-205ENST00000439160 ACIN1Q9UKV3 1341 aaKnown RBP17.17■□□□□ 0.34
TCOF1-205ENST00000439160 WIZO95785 1651 aa17.17■□□□□ 0.34
TCOF1-205ENST00000439160 NPM1P06748 294 aaKnown RBP eCLIP17.14■□□□□ 0.33
TCOF1-205ENST00000439160 BCANQ96GW7 911 aa17.14■□□□□ 0.33
TCOF1-205ENST00000439160 RRP7BPQ9NSQ0 103 aa17.11■□□□□ 0.33
TCOF1-205ENST00000439160 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.11■□□□□ 0.333e-8■■■■□ 20.9
TCOF1-205ENST00000439160 TSPY4P0CV99 314 aa17.1■□□□□ 0.33
TCOF1-205ENST00000439160 TSPY10P0CW01 314 aa17.1■□□□□ 0.33
TCOF1-205ENST00000439160 DDX10Q13206 875 aaKnown RBP17.1■□□□□ 0.33
TCOF1-205ENST00000439160 CUX2O14529 1486 aa17.1■□□□□ 0.33
TCOF1-205ENST00000439160 SMARCA2P51531 1590 aa17.08■□□□□ 0.32
TCOF1-205ENST00000439160 CARMIL1Q5VZK9 1371 aa17.06■□□□□ 0.32
TCOF1-205ENST00000439160 KCNH8Q96L42 1107 aa17.05■□□□□ 0.32
TCOF1-205ENST00000439160 CHGAP10645 457 aaKnown RBP17.05■□□□□ 0.32
TCOF1-205ENST00000439160 SCAF1Q9H7N4 1312 aaKnown RBP17.04■□□□□ 0.32
TCOF1-205ENST00000439160 ERCC6Q03468 1493 aa17.04■□□□□ 0.32
TCOF1-205ENST00000439160 HIRIP3Q9BW71 556 aaPredicted RBP17.04■□□□□ 0.32
TCOF1-205ENST00000439160 TOP2AP11388 1531 aaKnown RBP17.04■□□□□ 0.32
TCOF1-205ENST00000439160 PLEKHD1A6NEE1 506 aa17.03■□□□□ 0.32
TCOF1-205ENST00000439160 ATAD2BQ9ULI0 1458 aa16.99■□□□□ 0.31
TCOF1-205ENST00000439160 DAXXQ9UER7 740 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-205ENST00000439160 KDM2AQ9Y2K7 1162 aa16.98■□□□□ 0.31
TCOF1-205ENST00000439160 CFDP1Q9UEE9 299 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-205ENST00000439160 TDRD9Q8NDG6 1382 aaKnown RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms