RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 VPS13DQ5THJ4 4388 aa5.46□□□□□ -1.54
TCOF1-204ENST00000427724 DNAH11Q96DT5 4516 aa5.45□□□□□ -1.54
TCOF1-204ENST00000427724 DNAH1Q9P2D7 4330 aa5.44□□□□□ -1.54
TCOF1-204ENST00000427724 KIAA1109Q2LD37 5005 aa5.43□□□□□ -1.54
TCOF1-204ENST00000427724 SACSQ9NZJ4 4579 aa5.42□□□□□ -1.54
TCOF1-204ENST00000427724 PKHD1P08F94 4074 aa5.42□□□□□ -1.54
TCOF1-204ENST00000427724 FAT1Q14517 4588 aa5.42□□□□□ -1.54
TCOF1-204ENST00000427724 P0C880 135 aa5.4□□□□□ -1.55
TCOF1-204ENST00000427724 DNAH2Q9P225 4427 aa5.39□□□□□ -1.55
TCOF1-204ENST00000427724 DNAH6Q9C0G6 4158 aa5.38□□□□□ -1.55
TCOF1-204ENST00000427724 EPPK1P58107 5090 aaKnown RBP5.37□□□□□ -1.55
TCOF1-204ENST00000427724 KRTAP3-1Q9BYR8 98 aa5.37□□□□□ -1.55
TCOF1-204ENST00000427724 DNAH5Q8TE73 4624 aa5.33□□□□□ -1.56
TCOF1-204ENST00000427724 RYR2Q92736 4967 aa5.33□□□□□ -1.56
TCOF1-204ENST00000427724 KRTAP10-4P60372 401 aaPredicted RBP5.32□□□□□ -1.56
TCOF1-204ENST00000427724 DYNC2H1Q8NCM8 4307 aaKnown RBP5.28□□□□□ -1.56
TCOF1-204ENST00000427724 DYNC1H1Q14204 4646 aaKnown RBP5.28□□□□□ -1.56
TCOF1-204ENST00000427724 LRP1BQ9NZR2 4599 aa5.27□□□□□ -1.57
TCOF1-204ENST00000427724 RYR1P21817 5038 aa5.26□□□□□ -1.57
TCOF1-204ENST00000427724 PRO2289Q9P1D8 64 aa5.23□□□□□ -1.57
TCOF1-204ENST00000427724 MYCBP2O75592 4640 aa5.23□□□□□ -1.57
TCOF1-204ENST00000427724 DNAH8Q96JB1 4490 aa5.23□□□□□ -1.57
TCOF1-204ENST00000427724 KRTAP12-2P59991 146 aa5.21□□□□□ -1.58
TCOF1-204ENST00000427724 KRTAP13-4Q3LI77 160 aa5.2□□□□□ -1.58
TCOF1-204ENST00000427724 TNP1P09430 55 aa5.2□□□□□ -1.58
TCOF1-204ENST00000427724 APOBP04114 4563 aaKnown RBP5.19□□□□□ -1.58
TCOF1-204ENST00000427724 VPS13BQ7Z7G8 4022 aa5.19□□□□□ -1.58
TCOF1-204ENST00000427724 FAT3Q8TDW7 4589 aa5.18□□□□□ -1.58
TCOF1-204ENST00000427724 LRP1Q07954 4544 aaKnown RBP5.18□□□□□ -1.58
TCOF1-204ENST00000427724 DNAH17Q9UFH2 4485 aa5.18□□□□□ -1.58
TCOF1-204ENST00000427724 FAT2Q9NYQ8 4349 aa5.16□□□□□ -1.58
TCOF1-204ENST00000427724 KRTAP10-6P60371 365 aaPredicted RBP5.15□□□□□ -1.59
TCOF1-204ENST00000427724 HECTD4Q9Y4D8 3996 aa5.14□□□□□ -1.59
TCOF1-204ENST00000427724 KRTAP17-1Q9BYP8 105 aa5.13□□□□□ -1.59
TCOF1-204ENST00000427724 KRTAP12-1P59990 96 aa5.1□□□□□ -1.59
TCOF1-204ENST00000427724 KRTAP15-1Q3LI76 137 aa5.1□□□□□ -1.59
TCOF1-204ENST00000427724 ALMS1Q8TCU4 4167 aa5.09□□□□□ -1.59
TCOF1-204ENST00000427724 KRTAP3-3Q9BYR6 98 aa5.07□□□□□ -1.6
TCOF1-204ENST00000427724 HERC2O95714 4834 aa5.07□□□□□ -1.6
TCOF1-204ENST00000427724 PKD1P98161 4303 aa5.07□□□□□ -1.6
TCOF1-204ENST00000427724 ABCA13Q86UQ4 5058 aa5.05□□□□□ -1.6
TCOF1-204ENST00000427724 KRTAP3-2Q9BYR7 98 aa5.04□□□□□ -1.6
TCOF1-204ENST00000427724 HERC1Q15751 4861 aa5□□□□□ -1.61
TCOF1-204ENST00000427724 HSPG2P98160 4391 aa5□□□□□ -1.61
TCOF1-204ENST00000427724 PP632Q6XCG6 107 aa4.98□□□□□ -1.61
TCOF1-204ENST00000427724 PCLOQ9Y6V0 5065 aa4.98□□□□□ -1.61
TCOF1-204ENST00000427724 BIRC6Q9NR09 4857 aa4.96□□□□□ -1.62
TCOF1-204ENST00000427724 LRP2P98164 4655 aa4.91□□□□□ -1.62
TCOF1-204ENST00000427724 RNF213Q63HN8 5207 aa4.88□□□□□ -1.63
TCOF1-204ENST00000427724 MUC2Q02817 5179 aa4.85□□□□□ -1.63
TCOF1-204ENST00000427724 LPAP08519 4548 aa4.84□□□□□ -1.63
TCOF1-204ENST00000427724 KRTAP4-1Q9BYQ7 146 aa4.83□□□□□ -1.64
TCOF1-204ENST00000427724 UBR4Q5T4S7 5183 aa4.82□□□□□ -1.64
TCOF1-204ENST00000427724 LORP23490 312 aaPredicted RBP4.76□□□□□ -1.65
TCOF1-204ENST00000427724 MT1HP80294 61 aa4.75□□□□□ -1.65
TCOF1-204ENST00000427724 PKHD1L1Q86WI1 4243 aa4.72□□□□□ -1.65
TCOF1-204ENST00000427724 KRTAP23-1A1A580 65 aa4.67□□□□□ -1.66
TCOF1-204ENST00000427724 FAT4Q6V0I7 4981 aa4.65□□□□□ -1.67
TCOF1-204ENST00000427724 MT2AP02795 61 aa4.6□□□□□ -1.67
TCOF1-204ENST00000427724 FSIP2Q5CZC0 6907 aa4.6□□□□□ -1.67
TCOF1-204ENST00000427724 TNXBP22105 4242 aa4.58□□□□□ -1.68
TCOF1-204ENST00000427724 CRCT1Q9UGL9 99 aa4.55□□□□□ -1.68
TCOF1-204ENST00000427724 KRTAP10-12P60413 245 aa4.55□□□□□ -1.68
TCOF1-204ENST00000427724 KRTAP8-1Q8IUC2 63 aa4.54□□□□□ -1.68
TCOF1-204ENST00000427724 MT1FP04733 61 aa4.52□□□□□ -1.69
TCOF1-204ENST00000427724 HMCN2Q8NDA2 5059 aa4.51□□□□□ -1.69
TCOF1-204ENST00000427724 INE1O15225 51 aa4.41□□□□□ -1.7
TCOF1-204ENST00000427724 SPRR2FQ96RM1 72 aa4.39□□□□□ -1.71
TCOF1-204ENST00000427724 LCE3AQ5TA76 89 aa4.34□□□□□ -1.71
TCOF1-204ENST00000427724 KRTAP12-3P60328 96 aa4.32□□□□□ -1.72
TCOF1-204ENST00000427724 KRTAP9-2Q9BYQ4 174 aa4.31□□□□□ -1.72
TCOF1-204ENST00000427724 SPRR2GQ9BYE4 73 aa4.31□□□□□ -1.72
TCOF1-204ENST00000427724 LCE2CQ5TA81 110 aa4.26□□□□□ -1.73
TCOF1-204ENST00000427724 KRTAP9-8Q9BYQ0 159 aa4.23□□□□□ -1.73
TCOF1-204ENST00000427724 USH2AO75445 5202 aa4.22□□□□□ -1.73
TCOF1-204ENST00000427724 KRTAP19-1Q8IUB9 90 aa4.19□□□□□ -1.74
TCOF1-204ENST00000427724 SPRR2EP22531 72 aa4.15□□□□□ -1.74
TCOF1-204ENST00000427724 SPRR2BP35325 72 aa4.15□□□□□ -1.74
TCOF1-204ENST00000427724 SPRR2AP35326 72 aa4.15□□□□□ -1.74
TCOF1-204ENST00000427724 MUC17Q685J3 4493 aa4.15□□□□□ -1.74
TCOF1-204ENST00000427724 KRTAP9-6A0A140TA67 174 aa4.15□□□□□ -1.75
TCOF1-204ENST00000427724 KRTAP9-3Q9BYQ3 159 aa4.12□□□□□ -1.75
TCOF1-204ENST00000427724 KRTAP19-2Q3LHN2 52 aa4.11□□□□□ -1.75
TCOF1-204ENST00000427724 KRTAP10-7P60409 375 aaPredicted RBP4.09□□□□□ -1.76
TCOF1-204ENST00000427724 KRTAP19-8Q3LI54 63 aa4.09□□□□□ -1.76
TCOF1-204ENST00000427724 SYNE1Q8NF91 8797 aaKnown RBP4.08□□□□□ -1.76
TCOF1-204ENST00000427724 KRTAP10-5P60370 271 aa4.08□□□□□ -1.76
TCOF1-204ENST00000427724 LCE2AQ5TA79 106 aaPredicted RBP4.06□□□□□ -1.76
TCOF1-204ENST00000427724 LCE2BO14633 110 aa4.06□□□□□ -1.76
TCOF1-204ENST00000427724 SPRR5A0A1B0GTR4 108 aa4.06□□□□□ -1.76
TCOF1-204ENST00000427724 MT1BP07438 61 aa4.05□□□□□ -1.76
TCOF1-204ENST00000427724 KRTAP19-5Q3LI72 72 aa4.02□□□□□ -1.77
TCOF1-204ENST00000427724 SPRR2DP22532 72 aa4.01□□□□□ -1.77
TCOF1-204ENST00000427724 FLGP20930 4061 aaPredicted RBP3.98□□□□□ -1.77
TCOF1-204ENST00000427724 KRTAP4-8A0A0G2JLE6 195 aa3.98□□□□□ -1.77
TCOF1-204ENST00000427724 KRTAP4-8Q9BYQ9 185 aa3.98□□□□□ -1.77
TCOF1-204ENST00000427724 MT1XP80297 61 aa3.95□□□□□ -1.78
TCOF1-204ENST00000427724 LCE2DQ5TA82 110 aaPredicted RBP3.95□□□□□ -1.78
TCOF1-204ENST00000427724 KRTAP9-7A8MTY7 169 aa3.87□□□□□ -1.79
TCOF1-204ENST00000427724 SYNE2Q8WXH0 6885 aaKnown RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms