RNA–Protein interactions for RNA: ENST00000331134.10

NPLOC4-201, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPLOC4, Length 4,415 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-201ENST00000331134 STARD9Q9P2P6 4700 aa8.88□□□□□ -0.99
NPLOC4-201ENST00000331134 KRTAP15-1Q3LI76 137 aa8.86□□□□□ -0.99
NPLOC4-201ENST00000331134 FRAS1Q86XX4 4008 aa8.81□□□□□ -1
NPLOC4-201ENST00000331134 KMT2AQ03164 3969 aa8.81□□□□□ -1
NPLOC4-201ENST00000331134 DNAH8Q96JB1 4490 aa8.79□□□□□ -1
NPLOC4-201ENST00000331134 DNAH11Q96DT5 4516 aa8.76□□□□□ -1.01
NPLOC4-201ENST00000331134 PRKDCP78527 4128 aaKnown RBP8.76□□□□□ -1.01
NPLOC4-201ENST00000331134 VPS13DQ5THJ4 4388 aa8.74□□□□□ -1.01
NPLOC4-201ENST00000331134 DNAH17Q9UFH2 4485 aa8.67□□□□□ -1.02
NPLOC4-201ENST00000331134 PRO2289Q9P1D8 64 aa8.64□□□□□ -1.03
NPLOC4-201ENST00000331134 HECTD4Q9Y4D8 3996 aa8.62□□□□□ -1.03
NPLOC4-201ENST00000331134 MT1HL1P0DM35 61 aa8.62□□□□□ -1.03
NPLOC4-201ENST00000331134 DNAH2Q9P225 4427 aa8.6□□□□□ -1.03
NPLOC4-201ENST00000331134 LRP1BQ9NZR2 4599 aa8.58□□□□□ -1.04
NPLOC4-201ENST00000331134 DNAH6Q9C0G6 4158 aa8.57□□□□□ -1.04
NPLOC4-201ENST00000331134 KRTAP10-4P60372 401 aaPredicted RBP8.56□□□□□ -1.04
NPLOC4-201ENST00000331134 DYNC2H1Q8NCM8 4307 aaKnown RBP8.54□□□□□ -1.04
NPLOC4-201ENST00000331134 DNHD1Q96M86 4753 aa8.52□□□□□ -1.05
NPLOC4-201ENST00000331134 LORP23490 312 aaPredicted RBP8.46□□□□□ -1.06
NPLOC4-201ENST00000331134 DNAH5Q8TE73 4624 aa8.44□□□□□ -1.06
NPLOC4-201ENST00000331134 VPS13BQ7Z7G8 4022 aa8.39□□□□□ -1.07
NPLOC4-201ENST00000331134 ALMS1Q8TCU4 4167 aa8.37□□□□□ -1.07
NPLOC4-201ENST00000331134 KRTAP4-5Q9BYR2 181 aa8.35□□□□□ -1.07
NPLOC4-201ENST00000331134 FAT1Q14517 4588 aa8.34□□□□□ -1.07
NPLOC4-201ENST00000331134 HYDINQ4G0P3 5121 aa8.29□□□□□ -1.08
NPLOC4-201ENST00000331134 MYCBP2O75592 4640 aa8.2□□□□□ -1.1
NPLOC4-201ENST00000331134 DYNC1H1Q14204 4646 aaKnown RBP8.2□□□□□ -1.1
NPLOC4-201ENST00000331134 PKHD1P08F94 4074 aa8.16□□□□□ -1.1
NPLOC4-201ENST00000331134 KRTAP10-12P60413 245 aa8.09□□□□□ -1.11
NPLOC4-201ENST00000331134 LCE3AQ5TA76 89 aa8.09□□□□□ -1.11
NPLOC4-201ENST00000331134 FAT2Q9NYQ8 4349 aa8.07□□□□□ -1.12
NPLOC4-201ENST00000331134 SACSQ9NZJ4 4579 aa8.06□□□□□ -1.12
NPLOC4-201ENST00000331134 PKD1P98161 4303 aa8.05□□□□□ -1.12
NPLOC4-201ENST00000331134 INE1O15225 51 aa8.04□□□□□ -1.12
NPLOC4-201ENST00000331134 KRTAP12-3P60328 96 aa8.03□□□□□ -1.12
NPLOC4-201ENST00000331134 RYR1P21817 5038 aa7.99□□□□□ -1.13
NPLOC4-201ENST00000331134 LRP1Q07954 4544 aaKnown RBP7.96□□□□□ -1.13
NPLOC4-201ENST00000331134 CRCT1Q9UGL9 99 aa7.94□□□□□ -1.14
NPLOC4-201ENST00000331134 KRTAP4-1Q9BYQ7 146 aa7.91□□□□□ -1.14
NPLOC4-201ENST00000331134 APOBP04114 4563 aaKnown RBP7.91□□□□□ -1.14
NPLOC4-201ENST00000331134 FAT3Q8TDW7 4589 aa7.83□□□□□ -1.16
NPLOC4-201ENST00000331134 KRTAP23-1A1A580 65 aa7.82□□□□□ -1.16
NPLOC4-201ENST00000331134 KIAA1109Q2LD37 5005 aa7.76□□□□□ -1.17
NPLOC4-201ENST00000331134 KMT2CQ8NEZ4 4911 aaKnown RBP7.68□□□□□ -1.18
NPLOC4-201ENST00000331134 RYR2Q92736 4967 aa7.65□□□□□ -1.18
NPLOC4-201ENST00000331134 KRTAP17-1Q9BYP8 105 aa7.65□□□□□ -1.19
NPLOC4-201ENST00000331134 HSPG2P98160 4391 aa7.64□□□□□ -1.19
NPLOC4-201ENST00000331134 RYR3Q15413 4870 aa7.59□□□□□ -1.19
NPLOC4-201ENST00000331134 PKHD1L1Q86WI1 4243 aa7.59□□□□□ -1.19
NPLOC4-201ENST00000331134 LRP2P98164 4655 aa7.56□□□□□ -1.2
NPLOC4-201ENST00000331134 TNXBP22105 4242 aa7.46□□□□□ -1.21
NPLOC4-201ENST00000331134 KRTAP10-5P60370 271 aa7.44□□□□□ -1.22
NPLOC4-201ENST00000331134 MT2AP02795 61 aa7.4□□□□□ -1.22
NPLOC4-201ENST00000331134 LPAP08519 4548 aa7.4□□□□□ -1.23
NPLOC4-201ENST00000331134 SPRR2GQ9BYE4 73 aa7.39□□□□□ -1.23
NPLOC4-201ENST00000331134 MT1HP80294 61 aa7.36□□□□□ -1.23
NPLOC4-201ENST00000331134 MT1FP04733 61 aa7.34□□□□□ -1.23
NPLOC4-201ENST00000331134 KRTAP8-1Q8IUC2 63 aa7.24□□□□□ -1.25
NPLOC4-201ENST00000331134 KRTAP19-5Q3LI72 72 aa7.19□□□□□ -1.26
NPLOC4-201ENST00000331134 KRTAP19-1Q8IUB9 90 aa7.16□□□□□ -1.26
NPLOC4-201ENST00000331134 EPPK1P58107 5090 aaKnown RBP7.16□□□□□ -1.26
NPLOC4-201ENST00000331134 ABCA13Q86UQ4 5058 aa7.14□□□□□ -1.27
NPLOC4-201ENST00000331134 LCE3CQ5T5A8 94 aa7.07□□□□□ -1.28
NPLOC4-201ENST00000331134 KRTAP10-7P60409 375 aaPredicted RBP7.05□□□□□ -1.28
NPLOC4-201ENST00000331134 HERC2O95714 4834 aa7.02□□□□□ -1.29
NPLOC4-201ENST00000331134 SYNE1Q8NF91 8797 aaKnown RBP6.98□□□□□ -1.29
NPLOC4-201ENST00000331134 MUC2Q02817 5179 aa6.94□□□□□ -1.3
NPLOC4-201ENST00000331134 SPRR5A0A1B0GTR4 108 aa6.9□□□□□ -1.31
NPLOC4-201ENST00000331134 MT1XP80297 61 aa6.87□□□□□ -1.31
NPLOC4-201ENST00000331134 PCLOQ9Y6V0 5065 aa6.84□□□□□ -1.31
NPLOC4-201ENST00000331134 KRTAP19-8Q3LI54 63 aa6.83□□□□□ -1.32
NPLOC4-201ENST00000331134 MT1BP07438 61 aa6.79□□□□□ -1.32
NPLOC4-201ENST00000331134 KRTAP4-8A0A0G2JLE6 195 aa6.76□□□□□ -1.33
NPLOC4-201ENST00000331134 KRTAP4-8Q9BYQ9 185 aa6.76□□□□□ -1.33
NPLOC4-201ENST00000331134 MUC17Q685J3 4493 aa6.76□□□□□ -1.33
NPLOC4-201ENST00000331134 KRTAP19-2Q3LHN2 52 aa6.76□□□□□ -1.33
NPLOC4-201ENST00000331134 SPRR2FQ96RM1 72 aa6.71□□□□□ -1.34
NPLOC4-201ENST00000331134 KRTAP9-8Q9BYQ0 159 aa6.7□□□□□ -1.34
NPLOC4-201ENST00000331134 LCE2CQ5TA81 110 aa6.67□□□□□ -1.34
NPLOC4-201ENST00000331134 OBSCNQ5VST9 7968 aa6.66□□□□□ -1.34
NPLOC4-201ENST00000331134 UBR4Q5T4S7 5183 aa6.66□□□□□ -1.34
NPLOC4-201ENST00000331134 FAT4Q6V0I7 4981 aa6.64□□□□□ -1.35
NPLOC4-201ENST00000331134 FLGP20930 4061 aaPredicted RBP6.63□□□□□ -1.35
NPLOC4-201ENST00000331134 HERC1Q15751 4861 aa6.63□□□□□ -1.35
NPLOC4-201ENST00000331134 KRTAP12-4P60329 112 aa6.6□□□□□ -1.35
NPLOC4-201ENST00000331134 FSIP2Q5CZC0 6907 aa6.59□□□□□ -1.36
NPLOC4-201ENST00000331134 LCE3BQ5TA77 95 aa6.56□□□□□ -1.36
NPLOC4-201ENST00000331134 KRTAP4-7Q9BYR0 210 aa6.56□□□□□ -1.36
NPLOC4-201ENST00000331134 MT1GP13640 62 aa6.55□□□□□ -1.36
NPLOC4-201ENST00000331134 BIRC6Q9NR09 4857 aa6.51□□□□□ -1.37
NPLOC4-201ENST00000331134 RNF213Q63HN8 5207 aa6.51□□□□□ -1.37
NPLOC4-201ENST00000331134 KRTAP9-3Q9BYQ3 159 aa6.46□□□□□ -1.38
NPLOC4-201ENST00000331134 HMCN2Q8NDA2 5059 aa6.33□□□□□ -1.4
NPLOC4-201ENST00000331134 KRTAP19-4Q3LI73 84 aa6.33□□□□□ -1.4
NPLOC4-201ENST00000331134 LCE2BO14633 110 aa6.26□□□□□ -1.41
NPLOC4-201ENST00000331134 MT1LQ93083 61 aa6.17□□□□□ -1.42
NPLOC4-201ENST00000331134 LCE3DQ9BYE3 92 aa6.13□□□□□ -1.43
NPLOC4-201ENST00000331134 MT1EP04732 61 aa6.08□□□□□ -1.44
NPLOC4-201ENST00000331134 FCGBPQ9Y6R7 5405 aaPredicted RBP6.08□□□□□ -1.44
NPLOC4-201ENST00000331134 LOC100996750A0A140TA64 210 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms