RNA–Protein interactions for RNA: ENST00000320081.9

CLIP4-201, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP4, Length 4,293 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-201ENST00000320081 DNAH1Q9P2D7 4330 aa8.01□□□□□ -1.13
CLIP4-201ENST00000320081 KRTAP10-6P60371 365 aaPredicted RBP8□□□□□ -1.13
CLIP4-201ENST00000320081 DNAH3Q8TD57 4116 aa7.99□□□□□ -1.13
CLIP4-201ENST00000320081 KRTAP12-1P59990 96 aa7.98□□□□□ -1.13
CLIP4-201ENST00000320081 MYCBP2O75592 4640 aa7.97□□□□□ -1.13
CLIP4-201ENST00000320081 KRTAP4-5Q9BYR2 181 aa7.95□□□□□ -1.14
CLIP4-201ENST00000320081 DNAH8Q96JB1 4490 aa7.93□□□□□ -1.14
CLIP4-201ENST00000320081 MT1HL1P0DM35 61 aa7.91□□□□□ -1.14
CLIP4-201ENST00000320081 KRTAP10-4P60372 401 aaPredicted RBP7.88□□□□□ -1.15
CLIP4-201ENST00000320081 VPS13DQ5THJ4 4388 aa7.88□□□□□ -1.15
CLIP4-201ENST00000320081 LRP1BQ9NZR2 4599 aa7.85□□□□□ -1.15
CLIP4-201ENST00000320081 KRTAP3-3Q9BYR6 98 aa7.83□□□□□ -1.16
CLIP4-201ENST00000320081 HYDINQ4G0P3 5121 aa7.8□□□□□ -1.16
CLIP4-201ENST00000320081 DNAH6Q9C0G6 4158 aa7.79□□□□□ -1.16
CLIP4-201ENST00000320081 DNAH2Q9P225 4427 aa7.79□□□□□ -1.16
CLIP4-201ENST00000320081 FRAS1Q86XX4 4008 aa7.79□□□□□ -1.16
CLIP4-201ENST00000320081 RYR1P21817 5038 aa7.78□□□□□ -1.16
CLIP4-201ENST00000320081 PP632Q6XCG6 107 aa7.77□□□□□ -1.17
CLIP4-201ENST00000320081 KRTAP3-2Q9BYR7 98 aa7.77□□□□□ -1.17
CLIP4-201ENST00000320081 FAT3Q8TDW7 4589 aa7.74□□□□□ -1.17
CLIP4-201ENST00000320081 DNAH17Q9UFH2 4485 aa7.72□□□□□ -1.17
CLIP4-201ENST00000320081 KIAA1109Q2LD37 5005 aa7.72□□□□□ -1.17
CLIP4-201ENST00000320081 DYNC1H1Q14204 4646 aaKnown RBP7.7□□□□□ -1.18
CLIP4-201ENST00000320081 DYNC2H1Q8NCM8 4307 aaKnown RBP7.64□□□□□ -1.19
CLIP4-201ENST00000320081 PKHD1P08F94 4074 aa7.63□□□□□ -1.19
CLIP4-201ENST00000320081 KRTAP15-1Q3LI76 137 aa7.61□□□□□ -1.19
CLIP4-201ENST00000320081 VPS13BQ7Z7G8 4022 aa7.61□□□□□ -1.19
CLIP4-201ENST00000320081 HECTD4Q9Y4D8 3996 aa7.59□□□□□ -1.19
CLIP4-201ENST00000320081 KMT2CQ8NEZ4 4911 aaKnown RBP7.58□□□□□ -1.2
CLIP4-201ENST00000320081 ALMS1Q8TCU4 4167 aa7.58□□□□□ -1.2
CLIP4-201ENST00000320081 LORP23490 312 aaPredicted RBP7.56□□□□□ -1.2
CLIP4-201ENST00000320081 LRP1Q07954 4544 aaKnown RBP7.55□□□□□ -1.2
CLIP4-201ENST00000320081 SACSQ9NZJ4 4579 aa7.54□□□□□ -1.2
CLIP4-201ENST00000320081 RYR3Q15413 4870 aa7.43□□□□□ -1.22
CLIP4-201ENST00000320081 APOBP04114 4563 aaKnown RBP7.41□□□□□ -1.22
CLIP4-201ENST00000320081 PRO2289Q9P1D8 64 aa7.4□□□□□ -1.22
CLIP4-201ENST00000320081 FAT2Q9NYQ8 4349 aa7.36□□□□□ -1.23
CLIP4-201ENST00000320081 KRTAP4-1Q9BYQ7 146 aa7.31□□□□□ -1.24
CLIP4-201ENST00000320081 RYR2Q92736 4967 aa7.3□□□□□ -1.24
CLIP4-201ENST00000320081 LRP2P98164 4655 aa7.29□□□□□ -1.24
CLIP4-201ENST00000320081 PKD1P98161 4303 aa7.28□□□□□ -1.24
CLIP4-201ENST00000320081 KRTAP17-1Q9BYP8 105 aa7.25□□□□□ -1.25
CLIP4-201ENST00000320081 EPPK1P58107 5090 aaKnown RBP7.12□□□□□ -1.27
CLIP4-201ENST00000320081 HSPG2P98160 4391 aa7.02□□□□□ -1.29
CLIP4-201ENST00000320081 HERC2O95714 4834 aa7.02□□□□□ -1.29
CLIP4-201ENST00000320081 LCE3AQ5TA76 89 aa7.01□□□□□ -1.29
CLIP4-201ENST00000320081 KRTAP10-12P60413 245 aa7□□□□□ -1.29
CLIP4-201ENST00000320081 CRCT1Q9UGL9 99 aa6.97□□□□□ -1.29
CLIP4-201ENST00000320081 PCLOQ9Y6V0 5065 aa6.97□□□□□ -1.29
CLIP4-201ENST00000320081 LPAP08519 4548 aa6.91□□□□□ -1.3
CLIP4-201ENST00000320081 KRTAP12-3P60328 96 aa6.89□□□□□ -1.31
CLIP4-201ENST00000320081 PKHD1L1Q86WI1 4243 aa6.85□□□□□ -1.31
CLIP4-201ENST00000320081 ABCA13Q86UQ4 5058 aa6.81□□□□□ -1.32
CLIP4-201ENST00000320081 MT1HP80294 61 aa6.76□□□□□ -1.33
CLIP4-201ENST00000320081 FSIP2Q5CZC0 6907 aa6.72□□□□□ -1.33
CLIP4-201ENST00000320081 MT2AP02795 61 aa6.72□□□□□ -1.33
CLIP4-201ENST00000320081 MUC2Q02817 5179 aa6.71□□□□□ -1.34
CLIP4-201ENST00000320081 MT1FP04733 61 aa6.7□□□□□ -1.34
CLIP4-201ENST00000320081 TNXBP22105 4242 aa6.67□□□□□ -1.34
CLIP4-201ENST00000320081 HERC1Q15751 4861 aa6.64□□□□□ -1.35
CLIP4-201ENST00000320081 RNF213Q63HN8 5207 aa6.56□□□□□ -1.36
CLIP4-201ENST00000320081 SPRR2GQ9BYE4 73 aa6.54□□□□□ -1.36
CLIP4-201ENST00000320081 OBSCNQ5VST9 7968 aa6.52□□□□□ -1.37
CLIP4-201ENST00000320081 BIRC6Q9NR09 4857 aa6.52□□□□□ -1.37
CLIP4-201ENST00000320081 UBR4Q5T4S7 5183 aa6.5□□□□□ -1.37
CLIP4-201ENST00000320081 KRTAP19-1Q8IUB9 90 aa6.47□□□□□ -1.37
CLIP4-201ENST00000320081 KRTAP23-1A1A580 65 aa6.45□□□□□ -1.38
CLIP4-201ENST00000320081 SYNE1Q8NF91 8797 aaKnown RBP6.45□□□□□ -1.38
CLIP4-201ENST00000320081 FAT4Q6V0I7 4981 aa6.45□□□□□ -1.38
CLIP4-201ENST00000320081 INE1O15225 51 aa6.43□□□□□ -1.38
CLIP4-201ENST00000320081 KRTAP8-1Q8IUC2 63 aa6.36□□□□□ -1.39
CLIP4-201ENST00000320081 KRTAP10-7P60409 375 aaPredicted RBP6.33□□□□□ -1.4
CLIP4-201ENST00000320081 KRTAP19-5Q3LI72 72 aa6.33□□□□□ -1.4
CLIP4-201ENST00000320081 KRTAP10-5P60370 271 aa6.31□□□□□ -1.4
CLIP4-201ENST00000320081 LCE2CQ5TA81 110 aa6.24□□□□□ -1.41
CLIP4-201ENST00000320081 KRTAP9-8Q9BYQ0 159 aa6.19□□□□□ -1.42
CLIP4-201ENST00000320081 KRTAP4-8A0A0G2JLE6 195 aa6.19□□□□□ -1.42
CLIP4-201ENST00000320081 KRTAP4-8Q9BYQ9 185 aa6.19□□□□□ -1.42
CLIP4-201ENST00000320081 MUC17Q685J3 4493 aa6.18□□□□□ -1.42
CLIP4-201ENST00000320081 MT1XP80297 61 aa6.16□□□□□ -1.42
CLIP4-201ENST00000320081 MT1BP07438 61 aa6.15□□□□□ -1.42
CLIP4-201ENST00000320081 HMCN2Q8NDA2 5059 aa6.12□□□□□ -1.43
CLIP4-201ENST00000320081 SPRR5A0A1B0GTR4 108 aa6.12□□□□□ -1.43
CLIP4-201ENST00000320081 KRTAP19-2Q3LHN2 52 aa6.09□□□□□ -1.43
CLIP4-201ENST00000320081 KRTAP19-8Q3LI54 63 aa6.08□□□□□ -1.44
CLIP4-201ENST00000320081 LCE3CQ5T5A8 94 aa6.06□□□□□ -1.44
CLIP4-201ENST00000320081 SPRR2FQ96RM1 72 aa6.06□□□□□ -1.44
CLIP4-201ENST00000320081 FLGP20930 4061 aaPredicted RBP5.99□□□□□ -1.45
CLIP4-201ENST00000320081 KRTAP9-3Q9BYQ3 159 aa5.95□□□□□ -1.46
CLIP4-201ENST00000320081 KRTAP4-7Q9BYR0 210 aa5.93□□□□□ -1.46
CLIP4-201ENST00000320081 DSTQ03001 7570 aaKnown RBP5.92□□□□□ -1.46
CLIP4-201ENST00000320081 FCGBPQ9Y6R7 5405 aaPredicted RBP5.86□□□□□ -1.47
CLIP4-201ENST00000320081 LCE2BO14633 110 aa5.86□□□□□ -1.47
CLIP4-201ENST00000320081 USH2AO75445 5202 aa5.86□□□□□ -1.47
CLIP4-201ENST00000320081 MT1GP13640 62 aa5.8□□□□□ -1.48
CLIP4-201ENST00000320081 LCE3BQ5TA77 95 aa5.72□□□□□ -1.49
CLIP4-201ENST00000320081 KMT2DO14686 5537 aa5.69□□□□□ -1.5
CLIP4-201ENST00000320081 SYNE2Q8WXH0 6885 aaKnown RBP5.58□□□□□ -1.52
CLIP4-201ENST00000320081 KRTAP12-4P60329 112 aa5.55□□□□□ -1.52
CLIP4-201ENST00000320081 KRTAP4-3Q9BYR4 195 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms