RNA–Protein interactions for RNA: ENST00000320081.9

CLIP4-201, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP4, Length 4,293 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-201ENST00000320081 DCAF8L2P0C7V8 631 aa29.37■■■□□ 2.29
CLIP4-201ENST00000320081 NISCHQ9Y2I1 1504 aa28.78■■■□□ 2.2
CLIP4-201ENST00000320081 SUPT5HO00267 1087 aaKnown RBP28.42■■■□□ 2.14
CLIP4-201ENST00000320081 SHROOM4Q9ULL8 1493 aa28.21■■■□□ 2.11
CLIP4-201ENST00000320081 EHMT2Q96KQ7 1210 aa27.61■■■□□ 2.01
CLIP4-201ENST00000320081 FAM9AQ8IZU1 332 aaPredicted RBP26.82■■□□□ 1.88
CLIP4-201ENST00000320081 PCGF6Q9BYE7 350 aa26.69■■□□□ 1.86
CLIP4-201ENST00000320081 TTBK1Q5TCY1 1321 aaPredicted RBP26.59■■□□□ 1.85
CLIP4-201ENST00000320081 RANGAP1P46060 587 aaPredicted RBP26.08■■□□□ 1.77
CLIP4-201ENST00000320081 PPARGC1BQ86YN6 1023 aaKnown RBP26.03■■□□□ 1.76
CLIP4-201ENST00000320081 TRIM41Q8WV44 630 aa25.94■■□□□ 1.74
CLIP4-201ENST00000320081 LOC105371045A0A1W2PR82 267 aa25.84■■□□□ 1.73
CLIP4-201ENST00000320081 APLP2Q06481 763 aa25.66■■□□□ 1.7
CLIP4-201ENST00000320081 CHIC1Q5VXU3 224 aa25.6■■□□□ 1.69
CLIP4-201ENST00000320081 CCER1Q8TC90 406 aaPredicted RBP25.56■■□□□ 1.68
CLIP4-201ENST00000320081 UBTFP17480 764 aaKnown RBP25.46■■□□□ 1.67
CLIP4-201ENST00000320081 HRCP23327 699 aa25.3■■□□□ 1.64
CLIP4-201ENST00000320081 ATP1B4Q9UN42 357 aaPredicted RBP25.29■■□□□ 1.64
CLIP4-201ENST00000320081 YTHDC1Q96MU7 727 aaKnown RBP25.26■■□□□ 1.63
CLIP4-201ENST00000320081 TRIM26Q12899 539 aaPredicted RBP25.15■■□□□ 1.62
CLIP4-201ENST00000320081 ZEB1P37275 1124 aaPredicted RBP25.05■■□□□ 1.6
CLIP4-201ENST00000320081 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.92■■□□□ 1.58
CLIP4-201ENST00000320081 ITGAEP38570 1179 aa24.92■■□□□ 1.58
CLIP4-201ENST00000320081 CENPBP07199 599 aaPredicted RBP24.91■■□□□ 1.58
CLIP4-201ENST00000320081 HNRNPUL2Q1KMD3 747 aaKnown RBP24.89■■□□□ 1.58
CLIP4-201ENST00000320081 PELP1Q8IZL8 1130 aaKnown RBP24.75■■□□□ 1.55
CLIP4-201ENST00000320081 PABPN1Q86U42 306 aaKnown RBP eCLIP24.69■■□□□ 1.54
CLIP4-201ENST00000320081 ABCC9O60706 1549 aa24.62■■□□□ 1.53
CLIP4-201ENST00000320081 CNGB1Q14028 1251 aaPredicted RBP24.5■■□□□ 1.51
CLIP4-201ENST00000320081 DIEXFQ68CQ4 756 aaKnown RBP24.32■■□□□ 1.48
CLIP4-201ENST00000320081 POLR3GLQ9BT43 218 aa24.25■■□□□ 1.47
CLIP4-201ENST00000320081 NEFLP07196 543 aa24.13■■□□□ 1.45
CLIP4-201ENST00000320081 ERICH6Q7L0X2 663 aa24.1■■□□□ 1.45
CLIP4-201ENST00000320081 FAM50AQ14320 339 aaKnown RBP24.03■■□□□ 1.44
CLIP4-201ENST00000320081 MYO15BQ96JP2 1530 aa24.03■■□□□ 1.44
CLIP4-201ENST00000320081 NEUROD1Q13562 356 aa24.01■■□□□ 1.43
CLIP4-201ENST00000320081 GTF3C3Q9Y5Q9 886 aa24.01■■□□□ 1.43
CLIP4-201ENST00000320081 P3H3Q8IVL6 736 aa23.94■■□□□ 1.42
CLIP4-201ENST00000320081 BCANQ96GW7 911 aa23.9■■□□□ 1.42
CLIP4-201ENST00000320081 ZCCHC6Q5VYS8 1495 aaKnown RBP23.87■■□□□ 1.41
CLIP4-201ENST00000320081 ARID3CA6NKF2 412 aa23.87■■□□□ 1.41
CLIP4-201ENST00000320081 CSRNP3Q8WYN3 585 aa23.86■■□□□ 1.41
CLIP4-201ENST00000320081 SCRIBQ14160 1630 aa23.78■■□□□ 1.4
CLIP4-201ENST00000320081 MYT1LQ9UL68 1186 aa23.75■■□□□ 1.39
CLIP4-201ENST00000320081 MYT1Q01538 1121 aa23.7■■□□□ 1.38
CLIP4-201ENST00000320081 ZNF316A6NFI3 1004 aaPredicted RBP23.69■■□□□ 1.38
CLIP4-201ENST00000320081 TRIM52Q96A61 297 aa23.68■■□□□ 1.38
CLIP4-201ENST00000320081 SCAF1Q9H7N4 1312 aaKnown RBP23.64■■□□□ 1.38
CLIP4-201ENST00000320081 ZNF326Q5BKZ1 582 aaKnown RBP23.61■■□□□ 1.37
CLIP4-201ENST00000320081 ACIN1Q9UKV3 1341 aaKnown RBP23.59■■□□□ 1.37
CLIP4-201ENST00000320081 FBLN2P98095 1184 aa23.52■■□□□ 1.36
CLIP4-201ENST00000320081 DCAF1Q9Y4B6 1507 aa23.47■■□□□ 1.35
CLIP4-201ENST00000320081 HIRIP3Q9BW71 556 aaPredicted RBP23.42■■□□□ 1.34
CLIP4-201ENST00000320081 SLC4A1APQ9BWU0 796 aaKnown RBP23.38■■□□□ 1.33
CLIP4-201ENST00000320081 RSF1Q96T23 1441 aaPredicted RBP23.37■■□□□ 1.33
CLIP4-201ENST00000320081 DDX10Q13206 875 aaKnown RBP23.3■■□□□ 1.32
CLIP4-201ENST00000320081 MIER1Q8N108 512 aa23.3■■□□□ 1.32
CLIP4-201ENST00000320081 ANP32CO43423 234 aa23.29■■□□□ 1.32
CLIP4-201ENST00000320081 ZNF777Q9ULD5 760 aaPredicted RBP23.24■■□□□ 1.31
CLIP4-201ENST00000320081 CHIC2Q9UKJ5 165 aa23.21■■□□□ 1.31
CLIP4-201ENST00000320081 SENP3-EIF4A1A0A087X0R7 540 aa23.14■■□□□ 1.29
CLIP4-201ENST00000320081 CECR2Q9BXF3 1484 aa23.1■■□□□ 1.29
CLIP4-201ENST00000320081 FKBP8Q14318 412 aa23.1■■□□□ 1.29
CLIP4-201ENST00000320081 DAXXQ9UER7 740 aaPredicted RBP23.07■■□□□ 1.28
CLIP4-201ENST00000320081 SALL2Q9Y467 1007 aaPredicted RBP23.03■■□□□ 1.28
CLIP4-201ENST00000320081 CEP162Q5TB80 1403 aa23.02■■□□□ 1.28
CLIP4-201ENST00000320081 BCL11AQ9H165 835 aa23.01■■□□□ 1.27
CLIP4-201ENST00000320081 CLIP1P30622 1438 aa23.01■■□□□ 1.27
CLIP4-201ENST00000320081 CLSPNQ9HAW4 1339 aa23■■□□□ 1.27
CLIP4-201ENST00000320081 IRX6P78412 446 aaPredicted RBP23■■□□□ 1.27
CLIP4-201ENST00000320081 HNRNPUQ00839 825 aaKnown RBP eCLIP22.98■■□□□ 1.27
CLIP4-201ENST00000320081 FAM9BQ8IZU0 186 aa22.98■■□□□ 1.27
CLIP4-201ENST00000320081 CCDC180Q9P1Z9 1646 aa22.96■■□□□ 1.27
CLIP4-201ENST00000320081 TONSLQ96HA7 1378 aa22.91■■□□□ 1.26
CLIP4-201ENST00000320081 CDK11AQ9UQ88 783 aaPredicted RBP22.88■■□□□ 1.25
CLIP4-201ENST00000320081 SOGA1O94964 1423 aa22.87■■□□□ 1.25
CLIP4-201ENST00000320081 RRP7BPQ9NSQ0 103 aa22.87■■□□□ 1.25
CLIP4-201ENST00000320081 SIN3AQ96ST3 1273 aa22.82■■□□□ 1.24
CLIP4-201ENST00000320081 RTL5Q5HYW3 569 aaPredicted RBP22.79■■□□□ 1.24
CLIP4-201ENST00000320081 SENP3Q9H4L4 574 aaPredicted RBP22.79■■□□□ 1.24
CLIP4-201ENST00000320081 KDM2AQ9Y2K7 1162 aa22.78■■□□□ 1.24
CLIP4-201ENST00000320081 NPM2Q86SE8 214 aaKnown RBP22.78■■□□□ 1.24
CLIP4-201ENST00000320081 WRNQ14191 1432 aaPredicted RBP eCLIP22.78■■□□□ 1.24
CLIP4-201ENST00000320081 RB1CC1Q8TDY2 1594 aa22.76■■□□□ 1.23
CLIP4-201ENST00000320081 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.75■■□□□ 1.23
CLIP4-201ENST00000320081 MTUS2Q5JR59 1369 aa22.69■■□□□ 1.22
CLIP4-201ENST00000320081 GOLGA3Q08378 1498 aa22.66■■□□□ 1.22
CLIP4-201ENST00000320081 TNIKQ9UKE5 1360 aa22.65■■□□□ 1.22
CLIP4-201ENST00000320081 MRS2Q9HD23 443 aa22.64■■□□□ 1.21
CLIP4-201ENST00000320081 MROH2BQ7Z745 1585 aa22.64■■□□□ 1.21
CLIP4-201ENST00000320081 ABCC8Q09428 1581 aa22.64■■□□□ 1.21
CLIP4-201ENST00000320081 CHGAP10645 457 aaKnown RBP22.63■■□□□ 1.21
CLIP4-201ENST00000320081 KANK4Q5T7N3 995 aaPredicted RBP22.62■■□□□ 1.21
CLIP4-201ENST00000320081 CCDC88BA6NC98 1476 aa22.6■■□□□ 1.21
CLIP4-201ENST00000320081 CANXP27824 592 aaKnown RBP22.52■■□□□ 1.2
CLIP4-201ENST00000320081 RGL3Q3MIN7 710 aa22.52■■□□□ 1.2
CLIP4-201ENST00000320081 TMC1Q8TDI8 760 aa22.52■■□□□ 1.2
CLIP4-201ENST00000320081 PLPPR3Q6T4P5 718 aa22.49■■□□□ 1.19
CLIP4-201ENST00000320081 BAZ1BQ9UIG0 1483 aaKnown RBP22.49■■□□□ 1.19
CLIP4-201ENST00000320081 SLC24A1O60721 1099 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms