RNA–Protein interactions for RNA: ENST00000299957.10

CASC4-201, Transcript of cancer susceptibility 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CASC4, Length 3,962 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-201ENST00000299957 DNAH6Q9C0G6 4158 aa6.68□□□□□ -1.34
CASC4-201ENST00000299957 VPS13DQ5THJ4 4388 aa6.67□□□□□ -1.34
CASC4-201ENST00000299957 DNAH2Q9P225 4427 aa6.66□□□□□ -1.34
CASC4-201ENST00000299957 TPRXLQ17RH7 258 aa6.64□□□□□ -1.35
CASC4-201ENST00000299957 KRTAP10-6P60371 365 aaPredicted RBP6.62□□□□□ -1.35
CASC4-201ENST00000299957 VPS13BQ7Z7G8 4022 aa6.58□□□□□ -1.36
CASC4-201ENST00000299957 FAT3Q8TDW7 4589 aa6.55□□□□□ -1.36
CASC4-201ENST00000299957 DYNC1H1Q14204 4646 aaKnown RBP6.53□□□□□ -1.36
CASC4-201ENST00000299957 KRTAP12-1P59990 96 aa6.51□□□□□ -1.37
CASC4-201ENST00000299957 KRTAP3-3Q9BYR6 98 aa6.51□□□□□ -1.37
CASC4-201ENST00000299957 KRTAP10-4P60372 401 aaPredicted RBP6.5□□□□□ -1.37
CASC4-201ENST00000299957 DNAH3Q8TD57 4116 aa6.49□□□□□ -1.37
CASC4-201ENST00000299957 HECTD4Q9Y4D8 3996 aa6.49□□□□□ -1.37
CASC4-201ENST00000299957 LRP1Q07954 4544 aaKnown RBP6.48□□□□□ -1.37
CASC4-201ENST00000299957 KRTAP3-2Q9BYR7 98 aa6.47□□□□□ -1.37
CASC4-201ENST00000299957 KRTAP21-3Q3LHN1 58 aa6.46□□□□□ -1.37
CASC4-201ENST00000299957 PKHD1P08F94 4074 aa6.44□□□□□ -1.38
CASC4-201ENST00000299957 PLAC4Q8WY50 150 aa6.44□□□□□ -1.38
CASC4-201ENST00000299957 HYDINQ4G0P3 5121 aa6.44□□□□□ -1.38
CASC4-201ENST00000299957 KIAA1109Q2LD37 5005 aa6.42□□□□□ -1.38
CASC4-201ENST00000299957 RYR1P21817 5038 aa6.42□□□□□ -1.38
CASC4-201ENST00000299957 SACSQ9NZJ4 4579 aa6.39□□□□□ -1.39
CASC4-201ENST00000299957 A0A0A0MQY5 61 aa6.38□□□□□ -1.39
CASC4-201ENST00000299957 DYNC2H1Q8NCM8 4307 aaKnown RBP6.38□□□□□ -1.39
CASC4-201ENST00000299957 MT1HL1P0DM35 61 aa6.37□□□□□ -1.39
CASC4-201ENST00000299957 KRTAP4-5Q9BYR2 181 aa6.36□□□□□ -1.39
CASC4-201ENST00000299957 APOBP04114 4563 aaKnown RBP6.35□□□□□ -1.39
CASC4-201ENST00000299957 TNP1P09430 55 aa6.33□□□□□ -1.4
CASC4-201ENST00000299957 ALMS1Q8TCU4 4167 aa6.23□□□□□ -1.41
CASC4-201ENST00000299957 LORP23490 312 aaPredicted RBP6.23□□□□□ -1.41
CASC4-201ENST00000299957 RYR3Q15413 4870 aa6.22□□□□□ -1.41
CASC4-201ENST00000299957 LRP2P98164 4655 aa6.19□□□□□ -1.42
CASC4-201ENST00000299957 FAT2Q9NYQ8 4349 aa6.17□□□□□ -1.42
CASC4-201ENST00000299957 KRTAP10-10P60014 251 aa6.16□□□□□ -1.42
CASC4-201ENST00000299957 KMT2CQ8NEZ4 4911 aaKnown RBP6.14□□□□□ -1.43
CASC4-201ENST00000299957 KRTAP15-1Q3LI76 137 aa6.13□□□□□ -1.43
CASC4-201ENST00000299957 KRTAP17-1Q9BYP8 105 aa6.1□□□□□ -1.43
CASC4-201ENST00000299957 PP632Q6XCG6 107 aa6.1□□□□□ -1.43
CASC4-201ENST00000299957 HSPG2P98160 4391 aa6□□□□□ -1.45
CASC4-201ENST00000299957 KRTAP4-1Q9BYQ7 146 aa5.99□□□□□ -1.45
CASC4-201ENST00000299957 PKD1P98161 4303 aa5.96□□□□□ -1.46
CASC4-201ENST00000299957 LPAP08519 4548 aa5.95□□□□□ -1.46
CASC4-201ENST00000299957 RYR2Q92736 4967 aa5.92□□□□□ -1.46
CASC4-201ENST00000299957 EPPK1P58107 5090 aaKnown RBP5.88□□□□□ -1.47
CASC4-201ENST00000299957 HERC2O95714 4834 aa5.81□□□□□ -1.48
CASC4-201ENST00000299957 MUC2Q02817 5179 aa5.79□□□□□ -1.48
CASC4-201ENST00000299957 PKHD1L1Q86WI1 4243 aa5.71□□□□□ -1.49
CASC4-201ENST00000299957 ABCA13Q86UQ4 5058 aa5.68□□□□□ -1.5
CASC4-201ENST00000299957 LCE3AQ5TA76 89 aa5.65□□□□□ -1.51
CASC4-201ENST00000299957 PCLOQ9Y6V0 5065 aa5.61□□□□□ -1.51
CASC4-201ENST00000299957 TNXBP22105 4242 aa5.59□□□□□ -1.51
CASC4-201ENST00000299957 RNF213Q63HN8 5207 aa5.58□□□□□ -1.52
CASC4-201ENST00000299957 PRO2289Q9P1D8 64 aa5.57□□□□□ -1.52
CASC4-201ENST00000299957 FAT4Q6V0I7 4981 aa5.56□□□□□ -1.52
CASC4-201ENST00000299957 KRTAP10-12P60413 245 aa5.49□□□□□ -1.53
CASC4-201ENST00000299957 HERC1Q15751 4861 aa5.48□□□□□ -1.53
CASC4-201ENST00000299957 KRTAP12-3P60328 96 aa5.46□□□□□ -1.54
CASC4-201ENST00000299957 FSIP2Q5CZC0 6907 aa5.41□□□□□ -1.54
CASC4-201ENST00000299957 MT1FP04733 61 aa5.4□□□□□ -1.55
CASC4-201ENST00000299957 MT1HP80294 61 aa5.4□□□□□ -1.55
CASC4-201ENST00000299957 MT2AP02795 61 aa5.38□□□□□ -1.55
CASC4-201ENST00000299957 UBR4Q5T4S7 5183 aa5.38□□□□□ -1.55
CASC4-201ENST00000299957 KRTAP19-1Q8IUB9 90 aa5.33□□□□□ -1.56
CASC4-201ENST00000299957 CRCT1Q9UGL9 99 aa5.32□□□□□ -1.56
CASC4-201ENST00000299957 SPRR2GQ9BYE4 73 aa5.3□□□□□ -1.56
CASC4-201ENST00000299957 MUC17Q685J3 4493 aa5.28□□□□□ -1.56
CASC4-201ENST00000299957 OBSCNQ5VST9 7968 aa5.24□□□□□ -1.57
CASC4-201ENST00000299957 HMCN2Q8NDA2 5059 aa5.23□□□□□ -1.57
CASC4-201ENST00000299957 KRTAP23-1A1A580 65 aa5.22□□□□□ -1.57
CASC4-201ENST00000299957 KRTAP19-2Q3LHN2 52 aa5.21□□□□□ -1.58
CASC4-201ENST00000299957 BIRC6Q9NR09 4857 aa5.2□□□□□ -1.58
CASC4-201ENST00000299957 FLGP20930 4061 aaPredicted RBP5.18□□□□□ -1.58
CASC4-201ENST00000299957 LCE2CQ5TA81 110 aa5.17□□□□□ -1.58
CASC4-201ENST00000299957 KRTAP10-7P60409 375 aaPredicted RBP5.16□□□□□ -1.58
CASC4-201ENST00000299957 INE1O15225 51 aa5.11□□□□□ -1.59
CASC4-201ENST00000299957 KRTAP19-5Q3LI72 72 aa5.08□□□□□ -1.6
CASC4-201ENST00000299957 KRTAP8-1Q8IUC2 63 aa5.08□□□□□ -1.6
CASC4-201ENST00000299957 KRTAP9-8Q9BYQ0 159 aa5.06□□□□□ -1.6
CASC4-201ENST00000299957 MT1XP80297 61 aa5.06□□□□□ -1.6
CASC4-201ENST00000299957 SYNE1Q8NF91 8797 aaKnown RBP5.04□□□□□ -1.6
CASC4-201ENST00000299957 USH2AO75445 5202 aa5.04□□□□□ -1.6
CASC4-201ENST00000299957 MT1BP07438 61 aa5.03□□□□□ -1.6
CASC4-201ENST00000299957 KRTAP10-5P60370 271 aa5.03□□□□□ -1.6
CASC4-201ENST00000299957 KRTAP4-8A0A0G2JLE6 195 aa5.02□□□□□ -1.61
CASC4-201ENST00000299957 KRTAP4-8Q9BYQ9 185 aa5.02□□□□□ -1.61
CASC4-201ENST00000299957 SPRR5A0A1B0GTR4 108 aa4.95□□□□□ -1.62
CASC4-201ENST00000299957 KMT2DO14686 5537 aa4.95□□□□□ -1.62
CASC4-201ENST00000299957 KRTAP19-8Q3LI54 63 aa4.94□□□□□ -1.62
CASC4-201ENST00000299957 DSTQ03001 7570 aaKnown RBP4.92□□□□□ -1.62
CASC4-201ENST00000299957 LCE3CQ5T5A8 94 aa4.89□□□□□ -1.63
CASC4-201ENST00000299957 KRTAP4-7Q9BYR0 210 aa4.87□□□□□ -1.63
CASC4-201ENST00000299957 KRTAP9-3Q9BYQ3 159 aa4.84□□□□□ -1.63
CASC4-201ENST00000299957 FCGBPQ9Y6R7 5405 aaPredicted RBP4.82□□□□□ -1.64
CASC4-201ENST00000299957 LCE2BO14633 110 aa4.78□□□□□ -1.64
CASC4-201ENST00000299957 MT1GP13640 62 aa4.62□□□□□ -1.67
CASC4-201ENST00000299957 SPRR2FQ96RM1 72 aa4.61□□□□□ -1.67
CASC4-201ENST00000299957 KRTAP4-3Q9BYR4 195 aa4.53□□□□□ -1.68
CASC4-201ENST00000299957 LOC100996750A0A140TA64 210 aa4.52□□□□□ -1.69
CASC4-201ENST00000299957 SYNE2Q8WXH0 6885 aaKnown RBP4.5□□□□□ -1.69
CASC4-201ENST00000299957 LCE3BQ5TA77 95 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms