RNA–Protein interactions for RNA: ENST00000623535.1

CDKL5-205, Transcript of cyclin dependent kinase like 5, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDKL5, Length 12,533 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-205ENST00000623535 KRTAP1-4P0C5Y4 121 aa3.18□□□□□ -1.9
CDKL5-205ENST00000623535 H0YAA0 97 aa3.18□□□□□ -1.9
CDKL5-205ENST00000623535 LAMA2P24043 3122 aaKnown RBP3.18□□□□□ -1.9
CDKL5-205ENST00000623535 PKD1L1Q8TDX9 2849 aa3.17□□□□□ -1.9
CDKL5-205ENST00000623535 FBN3Q75N90 2809 aa3.16□□□□□ -1.9
CDKL5-205ENST00000623535 KRTAP15-1Q3LI76 137 aa3.16□□□□□ -1.9
CDKL5-205ENST00000623535 LRBAP50851 2863 aa3.14□□□□□ -1.91
CDKL5-205ENST00000623535 KRTAP12-2P59991 146 aa3.13□□□□□ -1.91
CDKL5-205ENST00000623535 CHD7Q9P2D1 2997 aa3.12□□□□□ -1.91
CDKL5-205ENST00000623535 VWFP04275 2813 aa3.12□□□□□ -1.91
CDKL5-205ENST00000623535 LAMA1P25391 3075 aa3.1□□□□□ -1.91
CDKL5-205ENST00000623535 PCNTO95613 3336 aa3.09□□□□□ -1.91
CDKL5-205ENST00000623535 KRTAP13-4Q3LI77 160 aa3.09□□□□□ -1.92
CDKL5-205ENST00000623535 SRRM2Q9UQ35 2752 aaKnown RBP3.08□□□□□ -1.92
CDKL5-205ENST00000623535 KRTAP10-6P60371 365 aaPredicted RBP3.08□□□□□ -1.92
CDKL5-205ENST00000623535 CELSR2Q9HCU4 2923 aa3.08□□□□□ -1.92
CDKL5-205ENST00000623535 FRYLO94915 3013 aa3.07□□□□□ -1.92
CDKL5-205ENST00000623535 KRTAP7-1Q8IUC3 87 aa3.07□□□□□ -1.92
CDKL5-205ENST00000623535 TGP01266 2768 aa3.06□□□□□ -1.92
CDKL5-205ENST00000623535 PRUNE2Q8WUY3 3088 aa3.05□□□□□ -1.92
CDKL5-205ENST00000623535 ZANQ9Y493 2812 aa3.05□□□□□ -1.92
CDKL5-205ENST00000623535 USP34Q70CQ2 3546 aa3.05□□□□□ -1.92
CDKL5-205ENST00000623535 WDFY4Q6ZS81 3184 aa3.04□□□□□ -1.92
CDKL5-205ENST00000623535 CRCT1Q9UGL9 99 aa3.04□□□□□ -1.92
CDKL5-205ENST00000623535 DCHS2Q6V1P9 2916 aa3.04□□□□□ -1.92
CDKL5-205ENST00000623535 CFAP54Q96N23 3096 aa3.03□□□□□ -1.92
CDKL5-205ENST00000623535 ASH1LQ9NR48 2969 aaKnown RBP3.03□□□□□ -1.92
CDKL5-205ENST00000623535 TACC2O95359 2948 aa3.02□□□□□ -1.93
CDKL5-205ENST00000623535 DMXL2Q8TDJ6 3036 aa3.01□□□□□ -1.93
CDKL5-205ENST00000623535 CYSTM1Q9H1C7 97 aa3.01□□□□□ -1.93
CDKL5-205ENST00000623535 KRTAP10-12P60413 245 aa3□□□□□ -1.93
CDKL5-205ENST00000623535 NBEAQ8NFP9 2946 aa2.98□□□□□ -1.93
CDKL5-205ENST00000623535 DMXL1Q9Y485 3027 aa2.97□□□□□ -1.93
CDKL5-205ENST00000623535 BRCA2P51587 3418 aa2.96□□□□□ -1.93
CDKL5-205ENST00000623535 KRTAP8-1Q8IUC2 63 aa2.96□□□□□ -1.94
CDKL5-205ENST00000623535 MXRA5Q9NR99 2828 aa2.95□□□□□ -1.94
CDKL5-205ENST00000623535 ATMQ13315 3056 aa2.95□□□□□ -1.94
CDKL5-205ENST00000623535 ZZEF1O43149 2961 aa2.93□□□□□ -1.94
CDKL5-205ENST00000623535 LORP23490 312 aaPredicted RBP2.93□□□□□ -1.94
CDKL5-205ENST00000623535 XIRP2A4UGR9 3374 aa2.92□□□□□ -1.94
CDKL5-205ENST00000623535 CELSR1Q9NYQ6 3014 aa2.91□□□□□ -1.94
CDKL5-205ENST00000623535 CDH23Q9H251 3354 aa2.9□□□□□ -1.94
CDKL5-205ENST00000623535 MYO15AQ9UKN7 3530 aa2.9□□□□□ -1.94
CDKL5-205ENST00000623535 COL12A1Q99715 3063 aa2.9□□□□□ -1.94
CDKL5-205ENST00000623535 INE1O15225 51 aa2.9□□□□□ -1.95
CDKL5-205ENST00000623535 LAMA3Q16787 3333 aa2.9□□□□□ -1.95
CDKL5-205ENST00000623535 COL7A1Q02388 2944 aa2.88□□□□□ -1.95
CDKL5-205ENST00000623535 DNAH14Q0VDD8 3507 aa2.87□□□□□ -1.95
CDKL5-205ENST00000623535 KRTAP10-7P60409 375 aaPredicted RBP2.87□□□□□ -1.95
CDKL5-205ENST00000623535 KRTAP12-1P59990 96 aa2.83□□□□□ -1.96
CDKL5-205ENST00000623535 SZT2Q5T011 3432 aa2.83□□□□□ -1.96
CDKL5-205ENST00000623535 MEGF8Q7Z7M0 2845 aa2.82□□□□□ -1.96
CDKL5-205ENST00000623535 KRTAP12-3P60328 96 aa2.81□□□□□ -1.96
CDKL5-205ENST00000623535 MKI67P46013 3256 aaKnown RBP2.79□□□□□ -1.96
CDKL5-205ENST00000623535 HTTP42858 3142 aa2.79□□□□□ -1.96
CDKL5-205ENST00000623535 ADGRG4Q8IZF6 3080 aa2.79□□□□□ -1.96
CDKL5-205ENST00000623535 VPS13AQ96RL7 3174 aa2.77□□□□□ -1.97
CDKL5-205ENST00000623535 KRTAP10-5P60370 271 aa2.77□□□□□ -1.97
CDKL5-205ENST00000623535 VCANP13611 3396 aa2.76□□□□□ -1.97
CDKL5-205ENST00000623535 KRTAP23-1A1A580 65 aa2.76□□□□□ -1.97
CDKL5-205ENST00000623535 WDFY3Q8IZQ1 3526 aa2.76□□□□□ -1.97
CDKL5-205ENST00000623535 UNC80Q8N2C7 3258 aa2.75□□□□□ -1.97
CDKL5-205ENST00000623535 RANBP2P49792 3224 aaKnown RBP2.75□□□□□ -1.97
CDKL5-205ENST00000623535 FREM2Q5SZK8 3169 aa2.75□□□□□ -1.97
CDKL5-205ENST00000623535 BOD1L1Q8NFC6 3051 aa2.74□□□□□ -1.97
CDKL5-205ENST00000623535 FBN2P35556 2912 aa2.73□□□□□ -1.97
CDKL5-205ENST00000623535 SPRR2FQ96RM1 72 aa2.72□□□□□ -1.97
CDKL5-205ENST00000623535 MT1HL1P0DM35 61 aa2.71□□□□□ -1.98
CDKL5-205ENST00000623535 ASPMQ8IZT6 3477 aa2.71□□□□□ -1.98
CDKL5-205ENST00000623535 CFAP47Q6ZTR5 3102 aa2.66□□□□□ -1.98
CDKL5-205ENST00000623535 KRTAP19-4Q3LI73 84 aa2.64□□□□□ -1.99
CDKL5-205ENST00000623535 SPRR2EP22531 72 aa2.64□□□□□ -1.99
CDKL5-205ENST00000623535 SPRR2BP35325 72 aa2.64□□□□□ -1.99
CDKL5-205ENST00000623535 SPRR2AP35326 72 aa2.64□□□□□ -1.99
CDKL5-205ENST00000623535 ALMS1Q8TCU4 4167 aa2.64□□□□□ -1.99
CDKL5-205ENST00000623535 NBPF19A0A087WUL8 3843 aa2.63□□□□□ -1.99
CDKL5-205ENST00000623535 ZFHX3Q15911 3703 aa2.63□□□□□ -1.99
CDKL5-205ENST00000623535 SPTBN5Q9NRC6 3674 aaKnown RBP2.62□□□□□ -1.99
CDKL5-205ENST00000623535 ZFHX4Q86UP3 3567 aa2.61□□□□□ -1.99
CDKL5-205ENST00000623535 RELNP78509 3460 aa2.61□□□□□ -1.99
CDKL5-205ENST00000623535 EYSQ5T1H1 3165 aa2.61□□□□□ -1.99
CDKL5-205ENST00000623535 FBN1P35555 2871 aaKnown RBP2.6□□□□□ -1.99
CDKL5-205ENST00000623535 KRTAP12-4P60329 112 aa2.6□□□□□ -1.99
CDKL5-205ENST00000623535 KRTAP4-5Q9BYR2 181 aa2.6□□□□□ -1.99
CDKL5-205ENST00000623535 SPRR2DP22532 72 aa2.6□□□□□ -1.99
CDKL5-205ENST00000623535 LCE3AQ5TA76 89 aa2.6□□□□□ -1.99
CDKL5-205ENST00000623535 SPEGQ15772 3267 aa2.59□□□□□ -2
CDKL5-205ENST00000623535 DCHS1Q96JQ0 3298 aa2.57□□□□□ -2
CDKL5-205ENST00000623535 COL6A3P12111 3177 aa2.57□□□□□ -2
CDKL5-205ENST00000623535 CELSR3Q9NYQ7 3312 aa2.57□□□□□ -2
CDKL5-205ENST00000623535 HUWE1Q7Z6Z7 4374 aaKnown RBP2.56□□□□□ -2
CDKL5-205ENST00000623535 KRTAP3-1Q9BYR8 98 aa2.56□□□□□ -2
CDKL5-205ENST00000623535 DNAH1Q9P2D7 4330 aa2.56□□□□□ -2
CDKL5-205ENST00000623535 KRTAP10-4P60372 401 aaPredicted RBP2.55□□□□□ -2
CDKL5-205ENST00000623535 MUC3AQ02505 3323 aa2.55□□□□□ -2
CDKL5-205ENST00000623535 HRNRQ86YZ3 2850 aaPredicted RBP2.55□□□□□ -2
CDKL5-205ENST00000623535 LCE2BO14633 110 aa2.54□□□□□ -2
CDKL5-205ENST00000623535 SPENQ96T58 3664 aaKnown RBP2.53□□□□□ -2
CDKL5-205ENST00000623535 DMDP11532 3685 aa2.51□□□□□ -2.01
CDKL5-205ENST00000623535 OTOGQ6ZRI0 2925 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms