RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 PP632Q6XCG6 107 aa3.74□□□□□ -1.81
SYNE2-216ENST00000555002 PRO2289Q9P1D8 64 aa3.74□□□□□ -1.81
SYNE2-216ENST00000555002 PKD1L1Q8TDX9 2849 aa3.73□□□□□ -1.81
SYNE2-216ENST00000555002 SRCAPQ6ZRS2 3230 aa3.7□□□□□ -1.82
SYNE2-216ENST00000555002 HRNRQ86YZ3 2850 aaPredicted RBP3.68□□□□□ -1.82
SYNE2-216ENST00000555002 FRYLO94915 3013 aa3.67□□□□□ -1.82
SYNE2-216ENST00000555002 SRRM2Q9UQ35 2752 aaKnown RBP3.67□□□□□ -1.82
SYNE2-216ENST00000555002 XP32Q5T750 250 aa3.67□□□□□ -1.82
SYNE2-216ENST00000555002 RANBP2P49792 3224 aaKnown RBP3.66□□□□□ -1.82
SYNE2-216ENST00000555002 HTTP42858 3142 aa3.66□□□□□ -1.82
SYNE2-216ENST00000555002 KRTAP7-1Q8IUC3 87 aa3.65□□□□□ -1.83
SYNE2-216ENST00000555002 DMXL2Q8TDJ6 3036 aa3.64□□□□□ -1.83
SYNE2-216ENST00000555002 PCNTO95613 3336 aa3.64□□□□□ -1.83
SYNE2-216ENST00000555002 DCHS2Q6V1P9 2916 aa3.64□□□□□ -1.83
SYNE2-216ENST00000555002 ZZEF1O43149 2961 aa3.63□□□□□ -1.83
SYNE2-216ENST00000555002 TENM2Q9NT68 2774 aa3.63□□□□□ -1.83
SYNE2-216ENST00000555002 KRTAP13-1Q8IUC0 172 aa3.63□□□□□ -1.83
SYNE2-216ENST00000555002 GOLGB1Q14789 3259 aaKnown RBP3.61□□□□□ -1.83
SYNE2-216ENST00000555002 H0YAA0 97 aa3.61□□□□□ -1.83
SYNE2-216ENST00000555002 REV3LO60673 3130 aa3.61□□□□□ -1.83
SYNE2-216ENST00000555002 MXRA5Q9NR99 2828 aa3.61□□□□□ -1.83
SYNE2-216ENST00000555002 COL12A1Q99715 3063 aa3.6□□□□□ -1.83
SYNE2-216ENST00000555002 PRUNE2Q8WUY3 3088 aa3.59□□□□□ -1.83
SYNE2-216ENST00000555002 FBN2P35556 2912 aa3.57□□□□□ -1.84
SYNE2-216ENST00000555002 VPS13AQ96RL7 3174 aa3.55□□□□□ -1.84
SYNE2-216ENST00000555002 TPRXLQ17RH7 258 aa3.55□□□□□ -1.84
SYNE2-216ENST00000555002 KRTAP12-2P59991 146 aa3.53□□□□□ -1.84
SYNE2-216ENST00000555002 WDFY4Q6ZS81 3184 aa3.52□□□□□ -1.85
SYNE2-216ENST00000555002 UTRNP46939 3433 aa3.51□□□□□ -1.85
SYNE2-216ENST00000555002 KRTAP1-4P0C5Y4 121 aa3.48□□□□□ -1.85
SYNE2-216ENST00000555002 FREM2Q5SZK8 3169 aa3.48□□□□□ -1.85
SYNE2-216ENST00000555002 KRTAP15-1Q3LI76 137 aa3.48□□□□□ -1.85
SYNE2-216ENST00000555002 KRTAP13-3Q3SY46 172 aa3.47□□□□□ -1.85
SYNE2-216ENST00000555002 DMXL1Q9Y485 3027 aa3.47□□□□□ -1.85
SYNE2-216ENST00000555002 LAMA1P25391 3075 aa3.47□□□□□ -1.85
SYNE2-216ENST00000555002 CELSR1Q9NYQ6 3014 aa3.46□□□□□ -1.86
SYNE2-216ENST00000555002 CRCT1Q9UGL9 99 aa3.45□□□□□ -1.86
SYNE2-216ENST00000555002 KRTAP21-3Q3LHN1 58 aa3.45□□□□□ -1.86
SYNE2-216ENST00000555002 COL7A1Q02388 2944 aa3.43□□□□□ -1.86
SYNE2-216ENST00000555002 ATMQ13315 3056 aa3.42□□□□□ -1.86
SYNE2-216ENST00000555002 ADGRG4Q8IZF6 3080 aa3.42□□□□□ -1.86
SYNE2-216ENST00000555002 MEGF8Q7Z7M0 2845 aa3.41□□□□□ -1.86
SYNE2-216ENST00000555002 KRTAP13-4Q3LI77 160 aa3.39□□□□□ -1.87
SYNE2-216ENST00000555002 FBN3Q75N90 2809 aa3.35□□□□□ -1.87
SYNE2-216ENST00000555002 BOD1L1Q8NFC6 3051 aa3.34□□□□□ -1.87
SYNE2-216ENST00000555002 LAMA3Q16787 3333 aa3.33□□□□□ -1.88
SYNE2-216ENST00000555002 MKI67P46013 3256 aaKnown RBP3.3□□□□□ -1.88
SYNE2-216ENST00000555002 KRTAP12-1P59990 96 aa3.29□□□□□ -1.88
SYNE2-216ENST00000555002 FBN1P35555 2871 aaKnown RBP3.28□□□□□ -1.89
SYNE2-216ENST00000555002 BRCA2P51587 3418 aa3.27□□□□□ -1.89
SYNE2-216ENST00000555002 INE1O15225 51 aa3.26□□□□□ -1.89
SYNE2-216ENST00000555002 COL6A3P12111 3177 aa3.26□□□□□ -1.89
SYNE2-216ENST00000555002 NBPF19A0A087WUL8 3843 aa3.25□□□□□ -1.89
SYNE2-216ENST00000555002 ZFHX3Q15911 3703 aa3.24□□□□□ -1.89
SYNE2-216ENST00000555002 KRTAP23-1A1A580 65 aa3.23□□□□□ -1.89
SYNE2-216ENST00000555002 XIRP2A4UGR9 3374 aa3.22□□□□□ -1.89
SYNE2-216ENST00000555002 KRTAP10-12P60413 245 aa3.21□□□□□ -1.9
SYNE2-216ENST00000555002 UNC80Q8N2C7 3258 aa3.2□□□□□ -1.9
SYNE2-216ENST00000555002 CFAP47Q6ZTR5 3102 aa3.2□□□□□ -1.9
SYNE2-216ENST00000555002 OTOGQ6ZRI0 2925 aa3.19□□□□□ -1.9
SYNE2-216ENST00000555002 AKAP9Q99996 3911 aa3.17□□□□□ -1.9
SYNE2-216ENST00000555002 VCANP13611 3396 aa3.17□□□□□ -1.9
SYNE2-216ENST00000555002 SPTBN5Q9NRC6 3674 aaKnown RBP3.17□□□□□ -1.9
SYNE2-216ENST00000555002 CELSR3Q9NYQ7 3312 aa3.16□□□□□ -1.9
SYNE2-216ENST00000555002 KRTAP10-6P60371 365 aaPredicted RBP3.15□□□□□ -1.91
SYNE2-216ENST00000555002 SZT2Q5T011 3432 aa3.14□□□□□ -1.91
SYNE2-216ENST00000555002 KRTAP10-5P60370 271 aa3.12□□□□□ -1.91
SYNE2-216ENST00000555002 ZFHX4Q86UP3 3567 aa3.11□□□□□ -1.91
SYNE2-216ENST00000555002 EYSQ5T1H1 3165 aa3.1□□□□□ -1.91
SYNE2-216ENST00000555002 USP34Q70CQ2 3546 aa3.1□□□□□ -1.91
SYNE2-216ENST00000555002 DNAH14Q0VDD8 3507 aa3.1□□□□□ -1.91
SYNE2-216ENST00000555002 KRTAP3-1Q9BYR8 98 aa3.09□□□□□ -1.92
SYNE2-216ENST00000555002 LORP23490 312 aaPredicted RBP3.07□□□□□ -1.92
SYNE2-216ENST00000555002 KRTAP12-3P60328 96 aa3.07□□□□□ -1.92
SYNE2-216ENST00000555002 SPEGQ15772 3267 aa3.07□□□□□ -1.92
SYNE2-216ENST00000555002 MYO15AQ9UKN7 3530 aa3.06□□□□□ -1.92
SYNE2-216ENST00000555002 CDH23Q9H251 3354 aa3.06□□□□□ -1.92
SYNE2-216ENST00000555002 SMG1Q96Q15 3661 aaKnown RBP3.05□□□□□ -1.92
SYNE2-216ENST00000555002 DMDP11532 3685 aa3.04□□□□□ -1.92
SYNE2-216ENST00000555002 LAMA5O15230 3695 aa3.03□□□□□ -1.92
SYNE2-216ENST00000555002 WDFY3Q8IZQ1 3526 aa3.03□□□□□ -1.92
SYNE2-216ENST00000555002 KRTAP8-1Q8IUC2 63 aa3.02□□□□□ -1.93
SYNE2-216ENST00000555002 VPS13CQ709C8 3753 aa3.01□□□□□ -1.93
SYNE2-216ENST00000555002 LCE3AQ5TA76 89 aa3□□□□□ -1.93
SYNE2-216ENST00000555002 BSNQ9UPA5 3926 aa2.97□□□□□ -1.93
SYNE2-216ENST00000555002 SPENQ96T58 3664 aaKnown RBP2.96□□□□□ -1.94
SYNE2-216ENST00000555002 LOC400499M0QZD8 3231 aa2.94□□□□□ -1.94
SYNE2-216ENST00000555002 KRTAP4-5Q9BYR2 181 aa2.93□□□□□ -1.94
SYNE2-216ENST00000555002 ALMS1Q8TCU4 4167 aa2.93□□□□□ -1.94
SYNE2-216ENST00000555002 MT1HL1P0DM35 61 aa2.92□□□□□ -1.94
SYNE2-216ENST00000555002 KRTAP3-2Q9BYR7 98 aa2.9□□□□□ -1.95
SYNE2-216ENST00000555002 DCHS1Q96JQ0 3298 aa2.88□□□□□ -1.95
SYNE2-216ENST00000555002 TRRAPQ9Y4A5 3859 aa2.87□□□□□ -1.95
SYNE2-216ENST00000555002 LYSTQ99698 3801 aa2.87□□□□□ -1.95
SYNE2-216ENST00000555002 KRTAP3-3Q9BYR6 98 aa2.87□□□□□ -1.95
SYNE2-216ENST00000555002 CMYA5Q8N3K9 4069 aa2.85□□□□□ -1.95
SYNE2-216ENST00000555002 ASPMQ8IZT6 3477 aa2.85□□□□□ -1.95
SYNE2-216ENST00000555002 KRTAP19-4Q3LI73 84 aa2.85□□□□□ -1.95
SYNE2-216ENST00000555002 HECTD4Q9Y4D8 3996 aa2.83□□□□□ -1.96
SYNE2-216ENST00000555002 DNAH3Q8TD57 4116 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms