RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 WDFY4Q6ZS81 3184 aa2.69□□□□□ -1.98
CD44-231ENST00000531110 SPINK1P00995 79 aa2.69□□□□□ -1.98
CD44-231ENST00000531110 ANKHD1Q8IWZ3 2542 aaKnown RBP2.69□□□□□ -1.98
CD44-231ENST00000531110 TRIOO75962 3097 aa2.68□□□□□ -1.98
CD44-231ENST00000531110 KRTAP10-1P60331 282 aa2.68□□□□□ -1.98
CD44-231ENST00000531110 FLNBO75369 2602 aaKnown RBP2.67□□□□□ -1.98
CD44-231ENST00000531110 CSPG4Q6UVK1 2322 aa2.67□□□□□ -1.98
CD44-231ENST00000531110 C5orf42Q9H799 3197 aa2.67□□□□□ -1.98
CD44-231ENST00000531110 LRBAP50851 2863 aa2.67□□□□□ -1.98
CD44-231ENST00000531110 SPG11Q96JI7 2443 aa2.66□□□□□ -1.98
CD44-231ENST00000531110 CDH23Q9H251 3354 aa2.66□□□□□ -1.98
CD44-231ENST00000531110 RIF1Q5UIP0 2472 aaKnown RBP2.66□□□□□ -1.98
CD44-231ENST00000531110 NBASA2RRP1 2371 aa2.66□□□□□ -1.98
CD44-231ENST00000531110 FAM208BQ5VWN6 2430 aa2.66□□□□□ -1.98
CD44-231ENST00000531110 MAST4O15021 2626 aa2.65□□□□□ -1.98
CD44-231ENST00000531110 REV3LO60673 3130 aa2.65□□□□□ -1.99
CD44-231ENST00000531110 USP34Q70CQ2 3546 aa2.65□□□□□ -1.99
CD44-231ENST00000531110 ACACBO00763 2458 aa2.64□□□□□ -1.99
CD44-231ENST00000531110 NAV2Q8IVL1 2488 aa2.64□□□□□ -1.99
CD44-231ENST00000531110 A0A096LNI7 61 aa2.64□□□□□ -1.99
CD44-231ENST00000531110 M0QZ58 72 aa2.64□□□□□ -1.99
CD44-231ENST00000531110 DCHS1Q96JQ0 3298 aa2.64□□□□□ -1.99
CD44-231ENST00000531110 DSPP15924 2871 aaKnown RBP2.64□□□□□ -1.99
CD44-231ENST00000531110 ABCA2Q9BZC7 2435 aa2.63□□□□□ -1.99
CD44-231ENST00000531110 Q5VSD8 79 aa2.63□□□□□ -1.99
CD44-231ENST00000531110 BOD1L1Q8NFC6 3051 aa2.63□□□□□ -1.99
CD44-231ENST00000531110 XIRP2A4UGR9 3374 aa2.63□□□□□ -1.99
CD44-231ENST00000531110 CHD9Q3L8U1 2897 aa2.63□□□□□ -1.99
CD44-231ENST00000531110 ZNF292O60281 2723 aa2.62□□□□□ -1.99
CD44-231ENST00000531110 KRTAP12-1P59990 96 aa2.62□□□□□ -1.99
CD44-231ENST00000531110 APLNQ9ULZ1 77 aa2.62□□□□□ -1.99
CD44-231ENST00000531110 DMDP11532 3685 aa2.62□□□□□ -1.99
CD44-231ENST00000531110 VWFP04275 2813 aa2.61□□□□□ -1.99
CD44-231ENST00000531110 ZFYVE26Q68DK2 2539 aa2.61□□□□□ -1.99
CD44-231ENST00000531110 FN1P02751 2386 aaKnown RBP2.6□□□□□ -1.99
CD44-231ENST00000531110 ZFHX4Q86UP3 3567 aa2.6□□□□□ -1.99
CD44-231ENST00000531110 OTOGLQ3ZCN5 2332 aa2.6□□□□□ -1.99
CD44-231ENST00000531110 ZNF462Q96JM2 2506 aa2.6□□□□□ -1.99
CD44-231ENST00000531110 USP24Q9UPU5 2620 aa2.59□□□□□ -1.99
CD44-231ENST00000531110 RPS29P62273 56 aaKnown RBP2.59□□□□□ -1.99
CD44-231ENST00000531110 DMXL1Q9Y485 3027 aa2.59□□□□□ -2
CD44-231ENST00000531110 DNAH14Q0VDD8 3507 aa2.59□□□□□ -2
CD44-231ENST00000531110 PRRC2CQ9Y520 2896 aaKnown RBP2.59□□□□□ -2
CD44-231ENST00000531110 USP9XQ93008 2570 aaPredicted RBP2.58□□□□□ -2
CD44-231ENST00000531110 KRTAP13-4Q3LI77 160 aa2.58□□□□□ -2
CD44-231ENST00000531110 SPINK6Q6UWN8 80 aa2.58□□□□□ -2
CD44-231ENST00000531110 GCN1Q92616 2671 aaKnown RBP2.58□□□□□ -2
CD44-231ENST00000531110 F8P00451 2351 aa2.58□□□□□ -2
CD44-231ENST00000531110 TLN1Q9Y490 2541 aaKnown RBP2.58□□□□□ -2
CD44-231ENST00000531110 APCP25054 2843 aa2.57□□□□□ -2
CD44-231ENST00000531110 TACC2O95359 2948 aa2.57□□□□□ -2
CD44-231ENST00000531110 AKAP9Q99996 3911 aa2.57□□□□□ -2
CD44-231ENST00000531110 SPTAN1Q13813 2472 aaKnown RBP2.57□□□□□ -2
CD44-231ENST00000531110 HIVEP3Q5T1R4 2406 aa2.56□□□□□ -2
CD44-231ENST00000531110 MYO18BQ8IUG5 2567 aa2.55□□□□□ -2
CD44-231ENST00000531110 HELZ2Q9BYK8 2649 aaKnown RBP2.55□□□□□ -2
CD44-231ENST00000531110 NF1P21359 2839 aa2.54□□□□□ -2
CD44-231ENST00000531110 TEP1Q99973 2627 aaKnown RBP2.54□□□□□ -2
CD44-231ENST00000531110 PTPN13Q12923 2485 aa2.53□□□□□ -2
CD44-231ENST00000531110 DEFB135Q30KP9 77 aa2.53□□□□□ -2
CD44-231ENST00000531110 KRTAP5-2Q701N4 177 aa2.53□□□□□ -2
CD44-231ENST00000531110 MYO15AQ9UKN7 3530 aa2.53□□□□□ -2
CD44-231ENST00000531110 TLN2Q9Y4G6 2542 aa2.52□□□□□ -2.01
CD44-231ENST00000531110 A0A0D9SG42 100 aa2.52□□□□□ -2.01
CD44-231ENST00000531110 HTN3P15516 51 aa2.52□□□□□ -2.01
CD44-231ENST00000531110 MEGF8Q7Z7M0 2845 aa2.52□□□□□ -2.01
CD44-231ENST00000531110 FBN1P35555 2871 aaKnown RBP2.51□□□□□ -2.01
CD44-231ENST00000531110 CCDC168Q8NDH2 2452 aa2.51□□□□□ -2.01
CD44-231ENST00000531110 LAMA1P25391 3075 aa2.5□□□□□ -2.01
CD44-231ENST00000531110 COL12A1Q99715 3063 aa2.5□□□□□ -2.01
CD44-231ENST00000531110 SPEGQ15772 3267 aa2.5□□□□□ -2.01
CD44-231ENST00000531110 CRYBG3Q68DQ2 2970 aa2.5□□□□□ -2.01
CD44-231ENST00000531110 CEP295Q9C0D2 2601 aa2.5□□□□□ -2.01
CD44-231ENST00000531110 KRTAP13-2Q52LG2 175 aa2.5□□□□□ -2.01
CD44-231ENST00000531110 DMXL2Q8TDJ6 3036 aa2.5□□□□□ -2.01
CD44-231ENST00000531110 VPS13DQ5THJ4 4388 aa2.5□□□□□ -2.01
CD44-231ENST00000531110 COL6A5A8TX70 2615 aa2.5□□□□□ -2.01
CD44-231ENST00000531110 ABCA12Q86UK0 2595 aa2.5□□□□□ -2.01
CD44-231ENST00000531110 ASPMQ8IZT6 3477 aa2.49□□□□□ -2.01
CD44-231ENST00000531110 FREM2Q5SZK8 3169 aa2.49□□□□□ -2.01
CD44-231ENST00000531110 SONP18583 2426 aaKnown RBP2.49□□□□□ -2.01
CD44-231ENST00000531110 HECTD1Q9ULT8 2610 aa2.49□□□□□ -2.01
CD44-231ENST00000531110 DOPEY1Q5JWR5 2465 aa2.48□□□□□ -2.01
CD44-231ENST00000531110 SRRM2Q9UQ35 2752 aaKnown RBP2.48□□□□□ -2.01
CD44-231ENST00000531110 ITPR3Q14573 2671 aa2.48□□□□□ -2.01
CD44-231ENST00000531110 WDFY3Q8IZQ1 3526 aa2.48□□□□□ -2.01
CD44-231ENST00000531110 SPENQ96T58 3664 aaKnown RBP2.48□□□□□ -2.01
CD44-231ENST00000531110 CELSR1Q9NYQ6 3014 aa2.46□□□□□ -2.02
CD44-231ENST00000531110 ATMQ13315 3056 aa2.46□□□□□ -2.02
CD44-231ENST00000531110 TENM4Q6N022 2769 aa2.46□□□□□ -2.02
CD44-231ENST00000531110 TEX15Q9BXT5 2789 aa2.46□□□□□ -2.02
CD44-231ENST00000531110 CELSR3Q9NYQ7 3312 aa2.46□□□□□ -2.02
CD44-231ENST00000531110 LOC400499M0QZD8 3231 aa2.46□□□□□ -2.02
CD44-231ENST00000531110 JMJD1CQ15652 2540 aa2.45□□□□□ -2.02
CD44-231ENST00000531110 UTP20O75691 2785 aaKnown RBP2.45□□□□□ -2.02
CD44-231ENST00000531110 NBPF19A0A087WUL8 3843 aa2.45□□□□□ -2.02
CD44-231ENST00000531110 IGSF10Q6WRI0 2623 aa2.45□□□□□ -2.02
CD44-231ENST00000531110 CFAP46Q8IYW2 2715 aa2.45□□□□□ -2.02
CD44-231ENST00000531110 MYO9AB2RTY4 2548 aa2.44□□□□□ -2.02
CD44-231ENST00000531110 CENPEQ02224 2701 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms