RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 AEBP2Q6ZN18 517 aaPredicted RBP25.36■■□□□ 1.65
CD44-231ENST00000531110 CHIC1Q5VXU3 224 aa24.94■■□□□ 1.58
CD44-231ENST00000531110 PHF23Q9BUL5 403 aaPredicted RBP21.86■■□□□ 1.09
CD44-231ENST00000531110 SENP3Q9H4L4 574 aaPredicted RBP21.63■■□□□ 1.05
CD44-231ENST00000531110 PLPPR3Q6T4P5 718 aa20.32■□□□□ 0.84
CD44-231ENST00000531110 FOXD1Q16676 465 aa19.96■□□□□ 0.79
CD44-231ENST00000531110 PPP6R1Q9UPN7 881 aa19.22■□□□□ 0.67
CD44-231ENST00000531110 ADRA2BP18089 450 aa19.19■□□□□ 0.66
CD44-231ENST00000531110 PIAS4Q8N2W9 510 aaPredicted RBP18.85■□□□□ 0.61
CD44-231ENST00000531110 MSH5O43196 834 aa18.5■□□□□ 0.55
CD44-231ENST00000531110 PPP4R3CPQ6ZMV5 832 aa17.84■□□□□ 0.45
CD44-231ENST00000531110 SCAF1Q9H7N4 1312 aaKnown RBP17.73■□□□□ 0.43
CD44-231ENST00000531110 NCBP3Q53F19 620 aaKnown RBP17.48■□□□□ 0.39
CD44-231ENST00000531110 KCNA4P22459 653 aa17.47■□□□□ 0.39
CD44-231ENST00000531110 CNKSR2Q8WXI2 1034 aa17.39■□□□□ 0.37
CD44-231ENST00000531110 MAPK8IP2Q13387 824 aaPredicted RBP17.36■□□□□ 0.37
CD44-231ENST00000531110 DMRT2Q9Y5R5 561 aa17.27■□□□□ 0.36
CD44-231ENST00000531110 NPM3O75607 178 aaKnown RBP17.15■□□□□ 0.34
CD44-231ENST00000531110 RNF216Q9NWF9 866 aaPredicted RBP17.05■□□□□ 0.32
CD44-231ENST00000531110 HOXD11P31277 338 aaPredicted RBP16.97■□□□□ 0.31
CD44-231ENST00000531110 DNAJC5BQ9UF47 199 aa16.88■□□□□ 0.29
CD44-231ENST00000531110 SLC4A1APQ9BWU0 796 aaKnown RBP16.69■□□□□ 0.26
CD44-231ENST00000531110 POTEDQ86YR6 584 aa16.59■□□□□ 0.25
CD44-231ENST00000531110 DCAF8L1A6NGE4 600 aa16.34■□□□□ 0.21
CD44-231ENST00000531110 EHMT2Q96KQ7 1210 aa16.19■□□□□ 0.18
CD44-231ENST00000531110 SLC4A2P04920 1241 aa16.16■□□□□ 0.18
CD44-231ENST00000531110 FOXD4L1Q9NU39 408 aa16.15■□□□□ 0.18
CD44-231ENST00000531110 ZBTB22O15209 634 aa16.07■□□□□ 0.16
CD44-231ENST00000531110 CSRNP3Q8WYN3 585 aa16.07■□□□□ 0.16
CD44-231ENST00000531110 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.07■□□□□ 0.16
CD44-231ENST00000531110 MYCNP04198 464 aaPredicted RBP15.91■□□□□ 0.14
CD44-231ENST00000531110 U3KPZ7 1027 aaPredicted RBP15.84■□□□□ 0.13
CD44-231ENST00000531110 RNF39Q9H2S5 420 aa15.82■□□□□ 0.12
CD44-231ENST00000531110 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.8■□□□□ 0.12
CD44-231ENST00000531110 HNRNPUL2Q1KMD3 747 aaKnown RBP15.8■□□□□ 0.12
CD44-231ENST00000531110 SAMD1Q6SPF0 538 aaPredicted RBP15.71■□□□□ 0.11
CD44-231ENST00000531110 C1QBPQ07021 282 aaKnown RBP15.68■□□□□ 0.1
CD44-231ENST00000531110 ATXN8OSP0DMR3 200 aa15.67■□□□□ 0.1
CD44-231ENST00000531110 APLP2Q06481 763 aa15.63■□□□□ 0.09
CD44-231ENST00000531110 ZNF219Q9P2Y4 722 aaPredicted RBP15.34■□□□□ 0.05
CD44-231ENST00000531110 ATF5Q9Y2D1 282 aaPredicted RBP15.33■□□□□ 0.04
CD44-231ENST00000531110 SPINK5Q9NQ38 1064 aaPredicted RBP15.3■□□□□ 0.04
CD44-231ENST00000531110 CACNB1Q02641 598 aaPredicted RBP15.27■□□□□ 0.04
CD44-231ENST00000531110 CAPN15O75808 1086 aa15.25■□□□□ 0.03
CD44-231ENST00000531110 TRHP20396 242 aaPredicted RBP15.18■□□□□ 0.02
CD44-231ENST00000531110 DSG3P32926 999 aa15.05■□□□□ -0
CD44-231ENST00000531110 POLA2Q14181 598 aa14.99□□□□□ -0.01
CD44-231ENST00000531110 ABCB7O75027 752 aa14.91□□□□□ -0.02
CD44-231ENST00000531110 ZBTB12Q9Y330 459 aaPredicted RBP14.91□□□□□ -0.02
CD44-231ENST00000531110 FBLN2P98095 1184 aa14.81□□□□□ -0.04
CD44-231ENST00000531110 MKRN4PQ13434 485 aaPredicted RBP14.72□□□□□ -0.05
CD44-231ENST00000531110 FKBP8Q14318 412 aa14.49□□□□□ -0.09
CD44-231ENST00000531110 SPDYE2BA6NHP3 402 aa14.48□□□□□ -0.09
CD44-231ENST00000531110 SPDYE6P0CI01 402 aa14.48□□□□□ -0.09
CD44-231ENST00000531110 SPDYE2Q495Y8 402 aa14.48□□□□□ -0.09
CD44-231ENST00000531110 OSCARQ8IYS5 282 aa14.47□□□□□ -0.09
CD44-231ENST00000531110 SPDYE4A6NLX3 237 aa14.45□□□□□ -0.1
CD44-231ENST00000531110 RBM42Q9BTD8 480 aaKnown RBP14.43□□□□□ -0.1
CD44-231ENST00000531110 SSUH2Q9Y2M2 353 aa14.36□□□□□ -0.11
CD44-231ENST00000531110 PROM2Q8N271 834 aa14.34□□□□□ -0.11
CD44-231ENST00000531110 ZNF692Q9BU19 519 aaPredicted RBP14.34□□□□□ -0.11
CD44-231ENST00000531110 AKT1S1Q96B36 256 aa14.24□□□□□ -0.13
CD44-231ENST00000531110 PABPN1Q86U42 306 aaKnown RBP eCLIP14.14□□□□□ -0.15
CD44-231ENST00000531110 FBXO3Q9UK99 471 aa14.1□□□□□ -0.15
CD44-231ENST00000531110 STAG3Q9UJ98 1225 aa14.05□□□□□ -0.16
CD44-231ENST00000531110 REM2Q8IYK8 340 aaPredicted RBP14.03□□□□□ -0.16
CD44-231ENST00000531110 SPDYE1Q8NFV5 336 aaPredicted RBP14.01□□□□□ -0.17
CD44-231ENST00000531110 PITPNM1O00562 1244 aa13.85□□□□□ -0.19
CD44-231ENST00000531110 VASPP50552 380 aaPredicted RBP13.83□□□□□ -0.2
CD44-231ENST00000531110 CLEC11AQ9Y240 323 aa13.8□□□□□ -0.2
CD44-231ENST00000531110 PRR29P0C7W0 189 aa13.76□□□□□ -0.21
CD44-231ENST00000531110 CHRDL2Q6WN34 429 aa13.7□□□□□ -0.22
CD44-231ENST00000531110 PLEKHG5O94827 1062 aa13.69□□□□□ -0.22
CD44-231ENST00000531110 MIER1Q8N108 512 aa13.66□□□□□ -0.22
CD44-231ENST00000531110 PLCD3Q8N3E9 789 aa13.66□□□□□ -0.22
CD44-231ENST00000531110 FXR2P51116 673 aaKnown RBP eCLIP13.64□□□□□ -0.23
CD44-231ENST00000531110 ZBTB47Q9UFB7 747 aaPredicted RBP13.64□□□□□ -0.23
CD44-231ENST00000531110 IFNLR1Q8IU57 520 aaPredicted RBP13.61□□□□□ -0.23
CD44-231ENST00000531110 CREBZFQ9NS37 354 aa13.61□□□□□ -0.23
CD44-231ENST00000531110 PIP4P2Q8N4L2 257 aa13.53□□□□□ -0.24
CD44-231ENST00000531110 MNX1P50219 401 aaPredicted RBP13.51□□□□□ -0.25
CD44-231ENST00000531110 KLHL34Q8N239 644 aa13.5□□□□□ -0.25
CD44-231ENST00000531110 PRKAR2AP13861 404 aaKnown RBP13.49□□□□□ -0.25
CD44-231ENST00000531110 SPOCK2Q92563 424 aa13.48□□□□□ -0.25
CD44-231ENST00000531110 AMER1Q5JTC6 1135 aaPredicted RBP13.46□□□□□ -0.25
CD44-231ENST00000531110 NPM1P06748 294 aaKnown RBP eCLIP13.45□□□□□ -0.26
CD44-231ENST00000531110 CHADLQ6NUI6 762 aa13.43□□□□□ -0.26
CD44-231ENST00000531110 FARP1Q9Y4F1 1045 aaPredicted RBP13.43□□□□□ -0.26
CD44-231ENST00000531110 NUBP1P53384 320 aa13.36□□□□□ -0.27
CD44-231ENST00000531110 GSE1Q14687 1217 aa13.28□□□□□ -0.28
CD44-231ENST00000531110 RTN4Q9NQC3 1192 aaKnown RBP13.28□□□□□ -0.28
CD44-231ENST00000531110 FAM212AQ96EL1 285 aa13.27□□□□□ -0.29
CD44-231ENST00000531110 TRIM41Q8WV44 630 aa13.25□□□□□ -0.29
CD44-231ENST00000531110 RASEFQ8IZ41 740 aa13.23□□□□□ -0.29
CD44-231ENST00000531110 PKD2Q13563 968 aa13.19□□□□□ -0.3
CD44-231ENST00000531110 PAK3O75914 559 aaPredicted RBP13.18□□□□□ -0.3
CD44-231ENST00000531110 POTEHQ6S545 545 aa13.17□□□□□ -0.3
CD44-231ENST00000531110 C19orf67A6NJJ6 358 aa13.16□□□□□ -0.3
CD44-231ENST00000531110 DCAF8Q5TAQ9 597 aa13.16□□□□□ -0.3
CD44-231ENST00000531110 CIZ1Q9ULV3 898 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms