RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PRR26Q8N8Z3 221 aa8.53□□□□□ -1.04
USP48-213ENST00000529637 C8orf17Q9NRJ1 99 aa8.53□□□□□ -1.04
USP48-213ENST00000529637 RTL8CO15255 209 aa8.52□□□□□ -1.04
USP48-213ENST00000529637 TP53AIP1Q9HCN2 124 aa8.5□□□□□ -1.05
USP48-213ENST00000529637 KRTAP13-1Q8IUC0 172 aa8.5□□□□□ -1.05
USP48-213ENST00000529637 PSORS1C2Q9UIG4 136 aa8.5□□□□□ -1.05
USP48-213ENST00000529637 FRAS1Q86XX4 4008 aa8.49□□□□□ -1.05
USP48-213ENST00000529637 CDK2AP2O75956 126 aa8.48□□□□□ -1.05
USP48-213ENST00000529637 PRAC1Q96KF2 57 aa8.47□□□□□ -1.05
USP48-213ENST00000529637 IGLV5-52A0A0A0MRZ9 124 aa8.46□□□□□ -1.06
USP48-213ENST00000529637 ZNF706Q9Y5V0 76 aaPredicted RBP8.46□□□□□ -1.06
USP48-213ENST00000529637 SPINK6Q6UWN8 80 aa8.44□□□□□ -1.06
USP48-213ENST00000529637 ADM2Q7Z4H4 148 aa8.44□□□□□ -1.06
USP48-213ENST00000529637 A0A1B0GVX0 72 aa8.44□□□□□ -1.06
USP48-213ENST00000529637 Q5W150 140 aa8.44□□□□□ -1.06
USP48-213ENST00000529637 DNAH8Q96JB1 4490 aa8.43□□□□□ -1.06
USP48-213ENST00000529637 LINC00313P59037 77 aa8.43□□□□□ -1.06
USP48-213ENST00000529637 MRPL34Q9BQ48 92 aaKnown RBP8.43□□□□□ -1.06
USP48-213ENST00000529637 LY6G6CO95867 125 aa8.42□□□□□ -1.06
USP48-213ENST00000529637 MEGF8Q7Z7M0 2845 aa8.42□□□□□ -1.06
USP48-213ENST00000529637 ALMS1Q8TCU4 4167 aa8.42□□□□□ -1.06
USP48-213ENST00000529637 STARD9Q9P2P6 4700 aa8.42□□□□□ -1.06
USP48-213ENST00000529637 ZNF861PO60384 105 aa8.41□□□□□ -1.06
USP48-213ENST00000529637 C1orf134Q5TEV5 83 aa8.41□□□□□ -1.06
USP48-213ENST00000529637 WWC2-AS2Q96NR7 200 aa8.41□□□□□ -1.06
USP48-213ENST00000529637 CIRBP-AS1Q8TBR5 109 aa8.39□□□□□ -1.07
USP48-213ENST00000529637 LINC00483Q53H64 154 aa8.38□□□□□ -1.07
USP48-213ENST00000529637 PRKDCP78527 4128 aaKnown RBP8.37□□□□□ -1.07
USP48-213ENST00000529637 DYNC2H1Q8NCM8 4307 aaKnown RBP8.36□□□□□ -1.07
USP48-213ENST00000529637 C8orf87E5RJ46 101 aa8.36□□□□□ -1.07
USP48-213ENST00000529637 FBN3Q75N90 2809 aa8.33□□□□□ -1.08
USP48-213ENST00000529637 KMT2AQ03164 3969 aa8.33□□□□□ -1.08
USP48-213ENST00000529637 KRTAP13-3Q3SY46 172 aa8.33□□□□□ -1.08
USP48-213ENST00000529637 VPS13DQ5THJ4 4388 aa8.32□□□□□ -1.08
USP48-213ENST00000529637 IGLV7-43P04211 117 aa8.31□□□□□ -1.08
USP48-213ENST00000529637 ACYP2P14621 99 aa8.28□□□□□ -1.08
USP48-213ENST00000529637 RETNLBQ9BQ08 111 aa8.28□□□□□ -1.08
USP48-213ENST00000529637 HECTD4Q9Y4D8 3996 aa8.27□□□□□ -1.08
USP48-213ENST00000529637 DNAH17Q9UFH2 4485 aa8.26□□□□□ -1.09
USP48-213ENST00000529637 KRTAP10-2P60368 255 aa8.25□□□□□ -1.09
USP48-213ENST00000529637 DNAH2Q9P225 4427 aa8.25□□□□□ -1.09
USP48-213ENST00000529637 PLA2G1BP04054 148 aaKnown RBP8.24□□□□□ -1.09
USP48-213ENST00000529637 A0A1B0GU69 56 aa8.24□□□□□ -1.09
USP48-213ENST00000529637 DMAC1Q96GE9 116 aa8.22□□□□□ -1.09
USP48-213ENST00000529637 LINC01554Q52M75 96 aa8.2□□□□□ -1.1
USP48-213ENST00000529637 SPATA8Q6RVD6 105 aa8.2□□□□□ -1.1
USP48-213ENST00000529637 C4orf48Q5BLP8 95 aa8.19□□□□□ -1.1
USP48-213ENST00000529637 DNHD1Q96M86 4753 aa8.18□□□□□ -1.1
USP48-213ENST00000529637 SSBP3-AS1Q7Z2R9 100 aa8.17□□□□□ -1.1
USP48-213ENST00000529637 MIR22HGQ0VDD5 57 aa8.16□□□□□ -1.1
USP48-213ENST00000529637 DNAH11Q96DT5 4516 aa8.14□□□□□ -1.11
USP48-213ENST00000529637 KRTAP10-1P60331 282 aa8.13□□□□□ -1.11
USP48-213ENST00000529637 DNAH6Q9C0G6 4158 aa8.13□□□□□ -1.11
USP48-213ENST00000529637 UQCR11O14957 56 aa8.11□□□□□ -1.11
USP48-213ENST00000529637 CSAG1Q6PB30 78 aa8.11□□□□□ -1.11
USP48-213ENST00000529637 KRTAP13-2Q52LG2 175 aa8.09□□□□□ -1.11
USP48-213ENST00000529637 IGKV2-30P06310 120 aa8.09□□□□□ -1.11
USP48-213ENST00000529637 FAM229AH3BQW9 127 aa8.07□□□□□ -1.12
USP48-213ENST00000529637 IGKV2D-30A0A075B6S6 120 aa8.05□□□□□ -1.12
USP48-213ENST00000529637 H3BS24 57 aa8.04□□□□□ -1.12
USP48-213ENST00000529637 DNAH5Q8TE73 4624 aa8.03□□□□□ -1.12
USP48-213ENST00000529637 LRP1BQ9NZR2 4599 aa8.01□□□□□ -1.13
USP48-213ENST00000529637 SPINK1P00995 79 aa8□□□□□ -1.13
USP48-213ENST00000529637 Q6ZSA8 131 aa8□□□□□ -1.13
USP48-213ENST00000529637 TYMSOSQ8TAI1 123 aa8□□□□□ -1.13
USP48-213ENST00000529637 KRTAP16-1A8MUX0 517 aa7.98□□□□□ -1.13
USP48-213ENST00000529637 KRTAP1-4P0C5Y4 121 aa7.96□□□□□ -1.13
USP48-213ENST00000529637 SMR3BP02814 79 aaPredicted RBP7.93□□□□□ -1.14
USP48-213ENST00000529637 HYDINQ4G0P3 5121 aa7.93□□□□□ -1.14
USP48-213ENST00000529637 Q8N1X5 172 aa7.92□□□□□ -1.14
USP48-213ENST00000529637 FLG2Q5D862 2391 aaPredicted RBP7.91□□□□□ -1.14
USP48-213ENST00000529637 VPS13BQ7Z7G8 4022 aa7.88□□□□□ -1.15
USP48-213ENST00000529637 LINC00304Q8N9R0 145 aa7.86□□□□□ -1.15
USP48-213ENST00000529637 H0YAA0 97 aa7.86□□□□□ -1.15
USP48-213ENST00000529637 PKD1P98161 4303 aa7.84□□□□□ -1.15
USP48-213ENST00000529637 FAT2Q9NYQ8 4349 aa7.82□□□□□ -1.16
USP48-213ENST00000529637 A8MUU9 505 aa7.81□□□□□ -1.16
USP48-213ENST00000529637 C9orf92A6NGG3 77 aa7.8□□□□□ -1.16
USP48-213ENST00000529637 PKHD1P08F94 4074 aa7.78□□□□□ -1.16
USP48-213ENST00000529637 CRIPTQ9P021 101 aa7.77□□□□□ -1.17
USP48-213ENST00000529637 KRTAP25-1Q3LHN0 102 aa7.76□□□□□ -1.17
USP48-213ENST00000529637 ROMO1P60602 79 aa7.71□□□□□ -1.18
USP48-213ENST00000529637 FAT1Q14517 4588 aa7.7□□□□□ -1.18
USP48-213ENST00000529637 A0A1B0GU33 70 aa7.69□□□□□ -1.18
USP48-213ENST00000529637 KRTAP3-1Q9BYR8 98 aa7.67□□□□□ -1.18
USP48-213ENST00000529637 DYNC1H1Q14204 4646 aaKnown RBP7.66□□□□□ -1.18
USP48-213ENST00000529637 H1FX-AS1Q4G0G2 97 aa7.64□□□□□ -1.19
USP48-213ENST00000529637 SACSQ9NZJ4 4579 aa7.64□□□□□ -1.19
USP48-213ENST00000529637 RPS29P62273 56 aaKnown RBP7.63□□□□□ -1.19
USP48-213ENST00000529637 DMBT1Q9UGM3 2413 aaPredicted RBP7.62□□□□□ -1.19
USP48-213ENST00000529637 P0C880 135 aa7.57□□□□□ -1.2
USP48-213ENST00000529637 A0A1B0GVY2 172 aa7.55□□□□□ -1.2
USP48-213ENST00000529637 C20orf166-AS1Q96NR2 134 aa7.55□□□□□ -1.2
USP48-213ENST00000529637 KRTAP21-3Q3LHN1 58 aa7.54□□□□□ -1.2
USP48-213ENST00000529637 COX6B2Q6YFQ2 88 aa7.53□□□□□ -1.2
USP48-213ENST00000529637 KRTAP10-4P60372 401 aaPredicted RBP7.51□□□□□ -1.21
USP48-213ENST00000529637 APOBP04114 4563 aaKnown RBP7.48□□□□□ -1.21
USP48-213ENST00000529637 K7ERS5 55 aa7.44□□□□□ -1.22
USP48-213ENST00000529637 TPRXLQ17RH7 258 aa7.4□□□□□ -1.22
USP48-213ENST00000529637 KRTAP13-4Q3LI77 160 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms