RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 MT1HL1P0DM35 61 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 MKI67P46013 3256 aaKnown RBP0.27□□□□□ -2.37
VPS50-219ENST00000495039 SPTBN2O15020 2390 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 SPTBN1Q01082 2364 aaKnown RBP0.27□□□□□ -2.37
VPS50-219ENST00000495039 XIRP2A4UGR9 3374 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 SPTA1P02549 2419 aa0.27□□□□□ -2.37
VPS50-219ENST00000495039 PCNX1Q96RV3 2341 aa0.26□□□□□ -2.37
VPS50-219ENST00000495039 CEP250Q9BV73 2442 aa0.26□□□□□ -2.37
VPS50-219ENST00000495039 COL6A3P12111 3177 aa0.26□□□□□ -2.37
VPS50-219ENST00000495039 RANBP2P49792 3224 aaKnown RBP0.26□□□□□ -2.37
VPS50-219ENST00000495039 SPTBN5Q9NRC6 3674 aaKnown RBP0.26□□□□□ -2.37
VPS50-219ENST00000495039 HIVEP3Q5T1R4 2406 aa0.26□□□□□ -2.37
VPS50-219ENST00000495039 FAM208BQ5VWN6 2430 aa0.26□□□□□ -2.37
VPS50-219ENST00000495039 CENPFP49454 3210 aa0.26□□□□□ -2.37
VPS50-219ENST00000495039 CELSR3Q9NYQ7 3312 aa0.26□□□□□ -2.37
VPS50-219ENST00000495039 ANK3Q12955 4377 aaKnown RBP0.26□□□□□ -2.37
VPS50-219ENST00000495039 BRCA2P51587 3418 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 SPTAN1Q13813 2472 aaKnown RBP0.25□□□□□ -2.37
VPS50-219ENST00000495039 SPG11Q96JI7 2443 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 WNK1Q9H4A3 2382 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 PCNTO95613 3336 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 CEP350Q5VT06 3117 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 LAMA1P25391 3075 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 DNAH12Q6ZR08 3092 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 CEP290O15078 2479 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 TTC28Q96AY4 2481 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 GVINP1Q7Z2Y8 2422 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 ABCA2Q9BZC7 2435 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 CDH23Q9H251 3354 aa0.25□□□□□ -2.37
VPS50-219ENST00000495039 HUWE1Q7Z6Z7 4374 aaKnown RBP0.24□□□□□ -2.37
VPS50-219ENST00000495039 ANK2Q01484 3957 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 NCOR2Q9Y618 2525 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 WDFY3Q8IZQ1 3526 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 MAP1BP46821 2468 aaKnown RBP0.24□□□□□ -2.37
VPS50-219ENST00000495039 VCANP13611 3396 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 LAMA3Q16787 3333 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 BPTFQ12830 3046 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 MT1HP80294 61 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 CHD7Q9P2D1 2997 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 ASPMQ8IZT6 3477 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 PTPN13Q12923 2485 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 ACANP16112 2415 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 TRIOO75962 3097 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 NBASA2RRP1 2371 aa0.24□□□□□ -2.37
VPS50-219ENST00000495039 FAT4Q6V0I7 4981 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 REV3LO60673 3130 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 HTTP42858 3142 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 MYO9AB2RTY4 2548 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 JMJD1CQ15652 2540 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 ANKHD1Q8IWZ3 2542 aaKnown RBP0.23□□□□□ -2.37
VPS50-219ENST00000495039 SONP18583 2426 aaKnown RBP0.23□□□□□ -2.37
VPS50-219ENST00000495039 C2CD3Q4AC94 2353 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 CHD9Q3L8U1 2897 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 MT2AP02795 61 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 KRTAP2-3P0C7H8 128 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 KRTAP8-1Q8IUC2 63 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 SPRR2GQ9BYE4 73 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 KRTAP2-4Q9BYR9 128 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 KRTAP2-1Q9BYU5 128 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 PIEZO2Q9H5I5 2752 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 SPEGQ15772 3267 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 DCHS1Q96JQ0 3298 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 WDFY4Q6ZS81 3184 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 A0A0C4DFX4 3053 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 RELNP78509 3460 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 ACACBO00763 2458 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 DOPEY1Q5JWR5 2465 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 DNAH5Q8TE73 4624 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 SACSQ9NZJ4 4579 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 DNAH9Q9NYC9 4486 aa0.23□□□□□ -2.37
VPS50-219ENST00000495039 FREM2Q5SZK8 3169 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 EYSQ5T1H1 3165 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 CSMD1Q96PZ7 3565 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 MYO15AQ9UKN7 3530 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 BDP1A6H8Y1 2624 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 MAST4O15021 2626 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 PIEZO1Q92508 2521 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 LAMA2P24043 3122 aaKnown RBP0.22□□□□□ -2.37
VPS50-219ENST00000495039 LRP1BQ9NZR2 4599 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 F8P00451 2351 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 MT1FP04733 61 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 KRTAP19-8Q3LI54 63 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 PRUNE2Q8WUY3 3088 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 DNAH10Q8IVF4 4471 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 MGAQ8IWI9 3026 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 TNRC18O15417 2968 aaPredicted RBP0.22□□□□□ -2.37
VPS50-219ENST00000495039 USP9XQ93008 2570 aaPredicted RBP0.22□□□□□ -2.37
VPS50-219ENST00000495039 SVEP1Q4LDE5 3571 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 ZFHX4Q86UP3 3567 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 CACNA1AO00555 2505 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 FASNP49327 2511 aaKnown RBP0.22□□□□□ -2.37
VPS50-219ENST00000495039 HERC1Q15751 4861 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 VPS13AQ96RL7 3174 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 NBPF19A0A087WUL8 3843 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 MEGF8Q7Z7M0 2845 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 DNAH17Q9UFH2 4485 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 CCDC168Q8NDH2 2452 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 CFAP47Q6ZTR5 3102 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 DNAH2Q9P225 4427 aa0.22□□□□□ -2.37
VPS50-219ENST00000495039 CFAP54Q96N23 3096 aa0.22□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms