RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 AEBP2Q6ZN18 517 aaPredicted RBP31.24■■■□□ 2.59
VPS50-219ENST00000495039 CHIC1Q5VXU3 224 aa29.71■■■□□ 2.35
VPS50-219ENST00000495039 SENP3Q9H4L4 574 aaPredicted RBP26.73■■□□□ 1.87
VPS50-219ENST00000495039 PHF23Q9BUL5 403 aaPredicted RBP26.34■■□□□ 1.81
VPS50-219ENST00000495039 FOXD1Q16676 465 aa24.86■■□□□ 1.57
VPS50-219ENST00000495039 PLPPR3Q6T4P5 718 aa23.78■■□□□ 1.4
VPS50-219ENST00000495039 MSH5O43196 834 aa23.33■■□□□ 1.33
VPS50-219ENST00000495039 PIAS4Q8N2W9 510 aaPredicted RBP23.27■■□□□ 1.32
VPS50-219ENST00000495039 PPP6R1Q9UPN7 881 aa23.21■■□□□ 1.31
VPS50-219ENST00000495039 ADRA2BP18089 450 aa23.15■■□□□ 1.3
VPS50-219ENST00000495039 POTEDQ86YR6 584 aa22.71■■□□□ 1.23
VPS50-219ENST00000495039 SCAF1Q9H7N4 1312 aaKnown RBP21.29■■□□□ 1
VPS50-219ENST00000495039 MAPK8IP2Q13387 824 aaPredicted RBP21.25■□□□□ 0.99
VPS50-219ENST00000495039 DMRT2Q9Y5R5 561 aa21.18■□□□□ 0.98
VPS50-219ENST00000495039 PPP4R3CPQ6ZMV5 832 aa20.81■□□□□ 0.92
VPS50-219ENST00000495039 CNKSR2Q8WXI2 1034 aa20.45■□□□□ 0.86
VPS50-219ENST00000495039 HOXD11P31277 338 aaPredicted RBP20.39■□□□□ 0.85
VPS50-219ENST00000495039 DCAF8L1A6NGE4 600 aa20.32■□□□□ 0.84
VPS50-219ENST00000495039 RNF216Q9NWF9 866 aaPredicted RBP20.26■□□□□ 0.83
VPS50-219ENST00000495039 NCBP3Q53F19 620 aaKnown RBP20.07■□□□□ 0.8
VPS50-219ENST00000495039 CACNB1Q02641 598 aaPredicted RBP19.99■□□□□ 0.79
VPS50-219ENST00000495039 RNF39Q9H2S5 420 aa19.87■□□□□ 0.77
VPS50-219ENST00000495039 DNAJC5BQ9UF47 199 aa19.73■□□□□ 0.75
VPS50-219ENST00000495039 NPM3O75607 178 aaKnown RBP19.72■□□□□ 0.75
VPS50-219ENST00000495039 C1QBPQ07021 282 aaKnown RBP19.61■□□□□ 0.73
VPS50-219ENST00000495039 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.45■□□□□ 0.7
VPS50-219ENST00000495039 KCNA4P22459 653 aa19.33■□□□□ 0.68
VPS50-219ENST00000495039 U3KPZ7 1027 aaPredicted RBP19.02■□□□□ 0.64
VPS50-219ENST00000495039 SLC4A2P04920 1241 aa18.81■□□□□ 0.6
VPS50-219ENST00000495039 CAPN15O75808 1086 aa18.73■□□□□ 0.59
VPS50-219ENST00000495039 SPINK5Q9NQ38 1064 aaPredicted RBP18.72■□□□□ 0.59
VPS50-219ENST00000495039 DSG3P32926 999 aa18.6■□□□□ 0.57
VPS50-219ENST00000495039 APLP2Q06481 763 aa18.58■□□□□ 0.56
VPS50-219ENST00000495039 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.55■□□□□ 0.56
VPS50-219ENST00000495039 HNRNPUL2Q1KMD3 747 aaKnown RBP18.55■□□□□ 0.56
VPS50-219ENST00000495039 TRHP20396 242 aaPredicted RBP18.43■□□□□ 0.54
VPS50-219ENST00000495039 SAMD1Q6SPF0 538 aaPredicted RBP18.43■□□□□ 0.54
VPS50-219ENST00000495039 ZNF219Q9P2Y4 722 aaPredicted RBP18.43■□□□□ 0.54
VPS50-219ENST00000495039 ABCB7O75027 752 aa18.28■□□□□ 0.52
VPS50-219ENST00000495039 MYCNP04198 464 aaPredicted RBP18.28■□□□□ 0.52
VPS50-219ENST00000495039 SLC4A1APQ9BWU0 796 aaKnown RBP18.28■□□□□ 0.52
VPS50-219ENST00000495039 FOXD4L1Q9NU39 408 aa18.08■□□□□ 0.48
VPS50-219ENST00000495039 POLA2Q14181 598 aa17.92■□□□□ 0.46
VPS50-219ENST00000495039 POTEHQ6S545 545 aa17.82■□□□□ 0.44
VPS50-219ENST00000495039 RBM42Q9BTD8 480 aaKnown RBP17.81■□□□□ 0.44
VPS50-219ENST00000495039 ATF5Q9Y2D1 282 aaPredicted RBP17.78■□□□□ 0.44
VPS50-219ENST00000495039 ZBTB22O15209 634 aa17.74■□□□□ 0.43
VPS50-219ENST00000495039 ZBTB12Q9Y330 459 aaPredicted RBP17.63■□□□□ 0.41
VPS50-219ENST00000495039 ATXN8OSP0DMR3 200 aa17.54■□□□□ 0.4
VPS50-219ENST00000495039 CHRDL2Q6WN34 429 aa17.38■□□□□ 0.37
VPS50-219ENST00000495039 AKT1S1Q96B36 256 aa17.38■□□□□ 0.37
VPS50-219ENST00000495039 OSCARQ8IYS5 282 aa17.36■□□□□ 0.37
VPS50-219ENST00000495039 FBLN2P98095 1184 aa17.19■□□□□ 0.34
VPS50-219ENST00000495039 REM2Q8IYK8 340 aaPredicted RBP17.19■□□□□ 0.34
VPS50-219ENST00000495039 SPDYE2BA6NHP3 402 aa17.05■□□□□ 0.32
VPS50-219ENST00000495039 SPDYE6P0CI01 402 aa17.05■□□□□ 0.32
VPS50-219ENST00000495039 SPDYE2Q495Y8 402 aa17.05■□□□□ 0.32
VPS50-219ENST00000495039 PITPNM1O00562 1244 aa17■□□□□ 0.31
VPS50-219ENST00000495039 MKRN4PQ13434 485 aaPredicted RBP16.98■□□□□ 0.31
VPS50-219ENST00000495039 PIP4P2Q8N4L2 257 aa16.95■□□□□ 0.3
VPS50-219ENST00000495039 CSRNP3Q8WYN3 585 aa16.94■□□□□ 0.3
VPS50-219ENST00000495039 FXR2P51116 673 aaKnown RBP eCLIP16.86■□□□□ 0.29
VPS50-219ENST00000495039 ZNF692Q9BU19 519 aaPredicted RBP16.83■□□□□ 0.28
VPS50-219ENST00000495039 SSUH2Q9Y2M2 353 aa16.8■□□□□ 0.28
VPS50-219ENST00000495039 SPDYE1Q8NFV5 336 aaPredicted RBP16.77■□□□□ 0.28
VPS50-219ENST00000495039 EHMT2Q96KQ7 1210 aa16.75■□□□□ 0.27
VPS50-219ENST00000495039 SP7Q8TDD2 431 aaPredicted RBP16.71■□□□□ 0.27
VPS50-219ENST00000495039 CLEC11AQ9Y240 323 aa16.71■□□□□ 0.27
VPS50-219ENST00000495039 HAX1O00165 279 aa16.66■□□□□ 0.26
VPS50-219ENST00000495039 PABPN1Q86U42 306 aaKnown RBP eCLIP16.58■□□□□ 0.24
VPS50-219ENST00000495039 PRKAR2AP13861 404 aaKnown RBP16.57■□□□□ 0.24
VPS50-219ENST00000495039 PRR29P0C7W0 189 aa16.44■□□□□ 0.22
VPS50-219ENST00000495039 EVX2Q03828 476 aa16.38■□□□□ 0.21
VPS50-219ENST00000495039 CHADLQ6NUI6 762 aa16.35■□□□□ 0.21
VPS50-219ENST00000495039 C19orf67A6NJJ6 358 aa16.31■□□□□ 0.2
VPS50-219ENST00000495039 SPDYE4A6NLX3 237 aa16.22■□□□□ 0.19
VPS50-219ENST00000495039 STAG3Q9UJ98 1225 aa16.16■□□□□ 0.18
VPS50-219ENST00000495039 FARP1Q9Y4F1 1045 aaPredicted RBP16.14■□□□□ 0.17
VPS50-219ENST00000495039 GABBR2O75899 941 aa16.06■□□□□ 0.16
VPS50-219ENST00000495039 CD44P16070 742 aaKnown RBP16.06■□□□□ 0.16
VPS50-219ENST00000495039 CREBZFQ9NS37 354 aa16■□□□□ 0.15
VPS50-219ENST00000495039 CLCN6P51797 869 aa15.89■□□□□ 0.13
VPS50-219ENST00000495039 ZRANB1Q9UGI0 708 aa15.83■□□□□ 0.12
VPS50-219ENST00000495039 PROM2Q8N271 834 aa15.81■□□□□ 0.12
VPS50-219ENST00000495039 ZNF579Q8NAF0 562 aaKnown RBP15.81■□□□□ 0.12
VPS50-219ENST00000495039 NPM1P06748 294 aaKnown RBP eCLIP15.77■□□□□ 0.12
VPS50-219ENST00000495039 PAK3O75914 559 aaPredicted RBP15.76■□□□□ 0.11
VPS50-219ENST00000495039 MNX1P50219 401 aaPredicted RBP15.72■□□□□ 0.11
VPS50-219ENST00000495039 POTEIP0CG38 1075 aa15.69■□□□□ 0.1
VPS50-219ENST00000495039 DCBLD2Q96PD2 775 aa15.68■□□□□ 0.1
VPS50-219ENST00000495039 LHX8Q68G74 356 aa15.66■□□□□ 0.1
VPS50-219ENST00000495039 GALR2O43603 387 aaPredicted RBP15.59■□□□□ 0.09
VPS50-219ENST00000495039 PHF12Q96QT6 1004 aa15.59■□□□□ 0.09
VPS50-219ENST00000495039 PLEKHG5O94827 1062 aa15.53■□□□□ 0.08
VPS50-219ENST00000495039 MIER1Q8N108 512 aa15.48■□□□□ 0.07
VPS50-219ENST00000495039 TSPYL2Q9H2G4 693 aaPredicted RBP15.44■□□□□ 0.06
VPS50-219ENST00000495039 FKBP8Q14318 412 aa15.4■□□□□ 0.06
VPS50-219ENST00000495039 MS4A3Q96HJ5 214 aa15.39■□□□□ 0.05
VPS50-219ENST00000495039 PLCD3Q8N3E9 789 aa15.38■□□□□ 0.05
VPS50-219ENST00000495039 CCDC61Q9Y6R9 512 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms