RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, human

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDC42BPA-211	ENST00000466538	ATR	Q13535	2644 aa		0.39	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	CPS1	P31327	1500 aa		0.39	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	WNK1	Q9H4A3	2382 aa		0.39	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	LAMA2	P24043	3122 aa	Known RBP	0.39	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	BOD1L1	Q8NFC6	3051 aa		0.39	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	KNL1	Q8NG31	2342 aa		0.39	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	MDN1	Q9NU22	5596 aa		0.39	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	CSMD1	Q96PZ7	3565 aa		0.39	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	TOGARAM1	Q9Y4F4	1720 aa		0.38	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	DMBT1	Q9UGM3	2413 aa	Predicted RBP	0.38	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	C6orf48	Q9UBA6	75 aa		0.38	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	COL12A1	Q99715	3063 aa		0.38	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	DSP	P15924	2871 aa	Known RBP	0.38	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	SYCP2	Q9BX26	1530 aa		0.38	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	RIF1	Q5UIP0	2472 aa	Known RBP	0.38	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	MKI67	P46013	3256 aa	Known RBP	0.37	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	PDE4DIP	Q5VU43	2346 aa		0.37	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	TEX15	Q9BXT5	2789 aa		0.37	□□□□□ -2.35
CDC42BPA-211	ENST00000466538		H0YGX0	51 aa		0.37	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	TMEM167B	Q9NRX6	74 aa		0.37	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	EP300	Q09472	2414 aa	Predicted RBP	0.37	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	TG	P01266	2768 aa		0.37	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	FAT2	Q9NYQ8	4349 aa		0.37	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	UGGT1	Q9NYU2	1555 aa		0.36	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	CFAP47	Q6ZTR5	3102 aa		0.36	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	PRKDC	P78527	4128 aa	Known RBP	0.36	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	RNF213	Q63HN8	5207 aa		0.36	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	PRM1	P04553	51 aa		0.36	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	KIAA0586	Q9BVV6	1533 aa		0.36	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	EYS	Q5T1H1	3165 aa		0.36	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	BSN	Q9UPA5	3926 aa		0.36	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	ALMS1	Q8TCU4	4167 aa		0.36	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	PRRC2C	Q9Y520	2896 aa	Known RBP	0.35	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	TLN1	Q9Y490	2541 aa	Known RBP	0.35	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	BIRC6	Q9NR09	4857 aa		0.35	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	APC2	O95996	2303 aa		0.35	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	SPEG	Q15772	3267 aa		0.35	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	UNC80	Q8N2C7	3258 aa		0.35	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	IGIP	A6NJ69	53 aa		0.35	□□□□□ -2.35
CDC42BPA-211	ENST00000466538		H3BUA1	57 aa		0.35	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	PLN	P26678	52 aa		0.35	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	WT1-AS	Q06250	92 aa		0.35	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	MGAM2	Q2M2H8	2515 aa		0.35	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	COL7A1	Q02388	2944 aa		0.34	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	TLN2	Q9Y4G6	2542 aa		0.34	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	MYCBP2	O75592	4640 aa		0.34	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	ACAN	P16112	2415 aa		0.34	□□□□□ -2.35
CDC42BPA-211	ENST00000466538	ABRACL	Q9P1F3	81 aa		0.34	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	HUWE1	Q7Z6Z7	4374 aa	Known RBP	0.34	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	CELSR1	Q9NYQ6	3014 aa		0.34	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	ITPR2	Q14571	2701 aa		0.34	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	DNHD1	Q96M86	4753 aa		0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	LAMA3	Q16787	3333 aa		0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	RANBP2	P49792	3224 aa	Known RBP	0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	ANKRD36C	Q5JPF3	1778 aa		0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	RELN	P78509	3460 aa		0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	PRLH	P81277	87 aa		0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	DEFB106A	Q8N104	65 aa		0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	LINC00308	Q8TCZ7	52 aa		0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	NRXN3	Q9Y4C0	1643 aa		0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	NBEA	Q8NFP9	2946 aa		0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	CLASP1	Q7Z460	1538 aa		0.33	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	RPS27	P42677	84 aa	Known RBP	0.32	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	RPS27L	Q71UM5	84 aa	Known RBP	0.32	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	CMC2	Q9NRP2	79 aa		0.32	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	HMCN2	Q8NDA2	5059 aa		0.32	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	CDC42BPA	Q5VT25	1732 aa		0.32	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	EP400	Q96L91	3159 aa		0.32	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	DCHS1	Q96JQ0	3298 aa		0.32	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	SPTAN1	Q13813	2472 aa	Known RBP	0.31	□□□□□ -2.36
CDC42BPA-211	ENST00000466538		S4R3F8	94 aa		0.31	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	AGL	P35573	1532 aa		0.31	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	NIPBL	Q6KC79	2804 aa	eCLIP	0.31	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	DNAH12	Q6ZR08	3092 aa		0.31	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	MUC3A	Q02505	3323 aa		0.31	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	FANCD2	Q9BXW9	1451 aa		0.3	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	SMIM27	A0A1W2PRY6	76 aa		0.3	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	SNRPGP15	A8MWD9	76 aa		0.3	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	SPRR2D	P22532	72 aa		0.3	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	MTOR	P42345	2549 aa		0.3	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	NBAS	A2RRP1	2371 aa		0.3	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	BRCA2	P51587	3418 aa		0.29	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	ADCY10	Q96PN6	1610 aa		0.29	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	CENPF	P49454	3210 aa		0.29	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	USH2A	O75445	5202 aa		0.28	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	C5orf42	Q9H799	3197 aa		0.28	□□□□□ -2.36
CDC42BPA-211	ENST00000466538		H3BNG1	76 aa		0.28	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	NOP10	Q9NPE3	64 aa	Known RBP	0.28	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	LRBA	P50851	2863 aa		0.28	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	HRNR	Q86YZ3	2850 aa	Predicted RBP	0.28	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	CEP250	Q9BV73	2442 aa		0.28	□□□□□ -2.36
CDC42BPA-211	ENST00000466538	NF1	P21359	2839 aa		0.28	□□□□□ -2.37
CDC42BPA-211	ENST00000466538	WDR87	Q6ZQQ6	2873 aa		0.27	□□□□□ -2.37
CDC42BPA-211	ENST00000466538	PCNX1	Q96RV3	2341 aa		0.27	□□□□□ -2.37
CDC42BPA-211	ENST00000466538	ASPM	Q8IZT6	3477 aa		0.27	□□□□□ -2.37
CDC42BPA-211	ENST00000466538	C9orf92	A6NGG3	77 aa		0.27	□□□□□ -2.37
CDC42BPA-211	ENST00000466538	CRYBG3	Q68DQ2	2970 aa		0.27	□□□□□ -2.37
CDC42BPA-211	ENST00000466538	HERC2	O95714	4834 aa		0.27	□□□□□ -2.37
CDC42BPA-211	ENST00000466538	KMT2A	Q03164	3969 aa		0.27	□□□□□ -2.37

Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms