RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 Q6ZSA8 131 aa3.82□□□□□ -1.8
VCAN-203ENST00000343200 SMR3AQ99954 134 aa3.82□□□□□ -1.8
VCAN-203ENST00000343200 OTOGQ6ZRI0 2925 aa3.81□□□□□ -1.8
VCAN-203ENST00000343200 SMG1Q96Q15 3661 aaKnown RBP3.81□□□□□ -1.8
VCAN-203ENST00000343200 LAMA5O15230 3695 aa3.81□□□□□ -1.8
VCAN-203ENST00000343200 LINC00472Q9H8W2 130 aa3.81□□□□□ -1.8
VCAN-203ENST00000343200 LINC00612Q8N6U2 182 aa3.8□□□□□ -1.8
VCAN-203ENST00000343200 C20orf166-AS1Q96NR2 134 aa3.78□□□□□ -1.8
VCAN-203ENST00000343200 Q8NDZ9 215 aa3.78□□□□□ -1.8
VCAN-203ENST00000343200 SZT2Q5T011 3432 aa3.78□□□□□ -1.8
VCAN-203ENST00000343200 A0A087WTM6 91 aa3.77□□□□□ -1.81
VCAN-203ENST00000343200 M0QZ58 72 aa3.77□□□□□ -1.81
VCAN-203ENST00000343200 PANO1I0J062 215 aa3.76□□□□□ -1.81
VCAN-203ENST00000343200 CDH23Q9H251 3354 aa3.76□□□□□ -1.81
VCAN-203ENST00000343200 A0A1W2PPR1 153 aa3.76□□□□□ -1.81
VCAN-203ENST00000343200 CASC10Q5T4H9 136 aa3.75□□□□□ -1.81
VCAN-203ENST00000343200 SPEGQ15772 3267 aa3.75□□□□□ -1.81
VCAN-203ENST00000343200 AKAP9Q99996 3911 aa3.75□□□□□ -1.81
VCAN-203ENST00000343200 FBN1P35555 2871 aaKnown RBP3.74□□□□□ -1.81
VCAN-203ENST00000343200 A8MUU9 505 aa3.74□□□□□ -1.81
VCAN-203ENST00000343200 M0R2T5 61 aa3.73□□□□□ -1.81
VCAN-203ENST00000343200 MYO15AQ9UKN7 3530 aa3.73□□□□□ -1.81
VCAN-203ENST00000343200 C10orf142B7Z368 130 aa3.72□□□□□ -1.81
VCAN-203ENST00000343200 ADM2Q7Z4H4 148 aa3.71□□□□□ -1.81
VCAN-203ENST00000343200 SPRR1AP35321 89 aa3.71□□□□□ -1.82
VCAN-203ENST00000343200 KRTAP10-9P60411 292 aa3.7□□□□□ -1.82
VCAN-203ENST00000343200 LCE6AA0A183 80 aa3.69□□□□□ -1.82
VCAN-203ENST00000343200 KRTAP26-1Q6PEX3 210 aa3.68□□□□□ -1.82
VCAN-203ENST00000343200 NOTCH2NLQ7Z3S9 236 aa3.68□□□□□ -1.82
VCAN-203ENST00000343200 C10orf95Q9H7T3 257 aa3.68□□□□□ -1.82
VCAN-203ENST00000343200 PP632Q6XCG6 107 aa3.68□□□□□ -1.82
VCAN-203ENST00000343200 WWC2-AS2Q96NR7 200 aa3.67□□□□□ -1.82
VCAN-203ENST00000343200 MEGF8Q7Z7M0 2845 aa3.67□□□□□ -1.82
VCAN-203ENST00000343200 SPRR1BP22528 89 aa3.67□□□□□ -1.82
VCAN-203ENST00000343200 KRTAP10-11P60412 298 aa3.65□□□□□ -1.82
VCAN-203ENST00000343200 VPS13CQ709C8 3753 aa3.65□□□□□ -1.82
VCAN-203ENST00000343200 ZFHX4Q86UP3 3567 aa3.65□□□□□ -1.83
VCAN-203ENST00000343200 KRTAP29-1A8MX34 341 aaPredicted RBP3.65□□□□□ -1.83
VCAN-203ENST00000343200 KRTAP11-1Q8IUC1 163 aa3.64□□□□□ -1.83
VCAN-203ENST00000343200 LOC400499M0QZD8 3231 aa3.64□□□□□ -1.83
VCAN-203ENST00000343200 SMR3BP02814 79 aaPredicted RBP3.63□□□□□ -1.83
VCAN-203ENST00000343200 RELNP78509 3460 aa3.63□□□□□ -1.83
VCAN-203ENST00000343200 PLAC8Q9NZF1 115 aa3.62□□□□□ -1.83
VCAN-203ENST00000343200 K7EIL1 84 aa3.62□□□□□ -1.83
VCAN-203ENST00000343200 KRTAP4-16G5E9R7 235 aaPredicted RBP3.6□□□□□ -1.83
VCAN-203ENST00000343200 A8MU10 97 aa3.6□□□□□ -1.83
VCAN-203ENST00000343200 TNP1P09430 55 aa3.58□□□□□ -1.84
VCAN-203ENST00000343200 KRTAP24-1Q3LI83 254 aa3.58□□□□□ -1.84
VCAN-203ENST00000343200 EYSQ5T1H1 3165 aa3.55□□□□□ -1.84
VCAN-203ENST00000343200 P0C880 135 aa3.54□□□□□ -1.84
VCAN-203ENST00000343200 RPS29P62273 56 aaKnown RBP3.52□□□□□ -1.85
VCAN-203ENST00000343200 CSMD1Q96PZ7 3565 aa3.49□□□□□ -1.85
VCAN-203ENST00000343200 FBN3Q75N90 2809 aa3.49□□□□□ -1.85
VCAN-203ENST00000343200 H0YAA0 97 aa3.48□□□□□ -1.85
VCAN-203ENST00000343200 BSNQ9UPA5 3926 aa3.48□□□□□ -1.85
VCAN-203ENST00000343200 DCHS1Q96JQ0 3298 aa3.45□□□□□ -1.86
VCAN-203ENST00000343200 KRTAP10-3P60369 221 aa3.45□□□□□ -1.86
VCAN-203ENST00000343200 LYSTQ99698 3801 aa3.42□□□□□ -1.86
VCAN-203ENST00000343200 CUBNO60494 3623 aa3.41□□□□□ -1.86
VCAN-203ENST00000343200 Q5VSD8 79 aa3.4□□□□□ -1.87
VCAN-203ENST00000343200 TRRAPQ9Y4A5 3859 aa3.39□□□□□ -1.87
VCAN-203ENST00000343200 KRTAP1-5Q9BYS1 174 aa3.38□□□□□ -1.87
VCAN-203ENST00000343200 MUC3AQ02505 3323 aa3.37□□□□□ -1.87
VCAN-203ENST00000343200 Q6ZRN7 208 aaPredicted RBP3.36□□□□□ -1.87
VCAN-203ENST00000343200 CSMD3Q7Z407 3707 aa3.36□□□□□ -1.87
VCAN-203ENST00000343200 SVEP1Q4LDE5 3571 aa3.35□□□□□ -1.87
VCAN-203ENST00000343200 INE1O15225 51 aa3.33□□□□□ -1.88
VCAN-203ENST00000343200 KRTAP10-8P60410 259 aa3.32□□□□□ -1.88
VCAN-203ENST00000343200 KRTAP10-1P60331 282 aa3.3□□□□□ -1.88
VCAN-203ENST00000343200 KRTAP1-3Q8IUG1 177 aa3.3□□□□□ -1.88
VCAN-203ENST00000343200 KRTAP13-1Q8IUC0 172 aa3.29□□□□□ -1.88
VCAN-203ENST00000343200 PRO2289Q9P1D8 64 aa3.29□□□□□ -1.88
VCAN-203ENST00000343200 ALMS1Q8TCU4 4167 aa3.29□□□□□ -1.88
VCAN-203ENST00000343200 KRTAP1-1Q07627 177 aa3.28□□□□□ -1.88
VCAN-203ENST00000343200 KRTAP10-2P60368 255 aa3.28□□□□□ -1.88
VCAN-203ENST00000343200 CSMD2Q7Z408 3487 aa3.27□□□□□ -1.89
VCAN-203ENST00000343200 KRTAP13-2Q52LG2 175 aa3.24□□□□□ -1.89
VCAN-203ENST00000343200 HECTD4Q9Y4D8 3996 aa3.24□□□□□ -1.89
VCAN-203ENST00000343200 CMYA5Q8N3K9 4069 aa3.23□□□□□ -1.89
VCAN-203ENST00000343200 KRTAP13-4Q3LI77 160 aa3.21□□□□□ -1.9
VCAN-203ENST00000343200 KRTAP7-1Q8IUC3 87 aa3.18□□□□□ -1.9
VCAN-203ENST00000343200 DNAH3Q8TD57 4116 aa3.18□□□□□ -1.9
VCAN-203ENST00000343200 KRTAP12-2P59991 146 aa3.17□□□□□ -1.9
VCAN-203ENST00000343200 KRTAP15-1Q3LI76 137 aa3.14□□□□□ -1.91
VCAN-203ENST00000343200 TPRXLQ17RH7 258 aa3.12□□□□□ -1.91
VCAN-203ENST00000343200 XP32Q5T750 250 aa3.12□□□□□ -1.91
VCAN-203ENST00000343200 DNAH7Q8WXX0 4024 aa3.12□□□□□ -1.91
VCAN-203ENST00000343200 ANK2Q01484 3957 aa3.12□□□□□ -1.91
VCAN-203ENST00000343200 KRTAP23-1A1A580 65 aa3.08□□□□□ -1.92
VCAN-203ENST00000343200 KRTAP12-1P59990 96 aa3.08□□□□□ -1.92
VCAN-203ENST00000343200 KRTAP13-3Q3SY46 172 aa3.07□□□□□ -1.92
VCAN-203ENST00000343200 KRTAP21-3Q3LHN1 58 aa3.06□□□□□ -1.92
VCAN-203ENST00000343200 KRTAP10-10P60014 251 aa3.02□□□□□ -1.93
VCAN-203ENST00000343200 KRTAP1-4P0C5Y4 121 aa3.01□□□□□ -1.93
VCAN-203ENST00000343200 KMT2AQ03164 3969 aa3□□□□□ -1.93
VCAN-203ENST00000343200 ZNF469Q96JG9 3925 aaPredicted RBP3□□□□□ -1.93
VCAN-203ENST00000343200 A0A1B0GVY2 172 aa2.97□□□□□ -1.93
VCAN-203ENST00000343200 FRAS1Q86XX4 4008 aa2.86□□□□□ -1.95
VCAN-203ENST00000343200 DNAH6Q9C0G6 4158 aa2.86□□□□□ -1.95
VCAN-203ENST00000343200 KRTAP10-6P60371 365 aaPredicted RBP2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 205.1 ms