RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MYO15AQ9UKN7 3530 aa11.3□□□□□ -0.6
USP48-201ENST00000308271 CELSR2Q9HCU4 2923 aa11.28□□□□□ -0.6
USP48-201ENST00000308271 KRTAP13-1Q8IUC0 172 aa11.25□□□□□ -0.61
USP48-201ENST00000308271 H1FX-AS1Q4G0G2 97 aa11.17□□□□□ -0.62
USP48-201ENST00000308271 FBN2P35556 2912 aa11.15□□□□□ -0.62
USP48-201ENST00000308271 Q6ZRN7 208 aaPredicted RBP11.13□□□□□ -0.63
USP48-201ENST00000308271 DCHS2Q6V1P9 2916 aa11.13□□□□□ -0.63
USP48-201ENST00000308271 NF1P21359 2839 aa11.13□□□□□ -0.63
USP48-201ENST00000308271 RPL37P61927 97 aaKnown RBP11.12□□□□□ -0.63
USP48-201ENST00000308271 ROMO1P60602 79 aa11.1□□□□□ -0.63
USP48-201ENST00000308271 ADM2Q7Z4H4 148 aa11.1□□□□□ -0.63
USP48-201ENST00000308271 KRTAP10-2P60368 255 aa11.06□□□□□ -0.64
USP48-201ENST00000308271 KRTAP10-1P60331 282 aa11.06□□□□□ -0.64
USP48-201ENST00000308271 S4R3F8 94 aa11.03□□□□□ -0.64
USP48-201ENST00000308271 COX6B2Q6YFQ2 88 aa11□□□□□ -0.65
USP48-201ENST00000308271 DCHS1Q96JQ0 3298 aa11□□□□□ -0.65
USP48-201ENST00000308271 MXRA5Q9NR99 2828 aa10.99□□□□□ -0.65
USP48-201ENST00000308271 LUZP6Q538Z0 58 aa10.98□□□□□ -0.65
USP48-201ENST00000308271 KRTAP25-1Q3LHN0 102 aa10.97□□□□□ -0.65
USP48-201ENST00000308271 WDFY3Q8IZQ1 3526 aa10.97□□□□□ -0.65
USP48-201ENST00000308271 Q6ZSA8 131 aa10.93□□□□□ -0.66
USP48-201ENST00000308271 KRTAP13-2Q52LG2 175 aa10.9□□□□□ -0.66
USP48-201ENST00000308271 RPS29P62273 56 aaKnown RBP10.87□□□□□ -0.67
USP48-201ENST00000308271 MUC3AQ02505 3323 aa10.86□□□□□ -0.67
USP48-201ENST00000308271 TENM3Q9P273 2699 aa10.8□□□□□ -0.68
USP48-201ENST00000308271 CAMK2N1Q7Z7J9 78 aa10.77□□□□□ -0.68
USP48-201ENST00000308271 PKD1L1Q8TDX9 2849 aa10.76□□□□□ -0.69
USP48-201ENST00000308271 ZFHX4Q86UP3 3567 aa10.76□□□□□ -0.69
USP48-201ENST00000308271 RELNP78509 3460 aa10.75□□□□□ -0.69
USP48-201ENST00000308271 R4GN34 69 aa10.73□□□□□ -0.69
USP48-201ENST00000308271 KRTAP21-3Q3LHN1 58 aa10.69□□□□□ -0.7
USP48-201ENST00000308271 TENM1Q9UKZ4 2725 aa10.67□□□□□ -0.7
USP48-201ENST00000308271 CSMD1Q96PZ7 3565 aa10.63□□□□□ -0.71
USP48-201ENST00000308271 A0A0A0MQY5 61 aa10.62□□□□□ -0.71
USP48-201ENST00000308271 ASPMQ8IZT6 3477 aa10.62□□□□□ -0.71
USP48-201ENST00000308271 M0QZ58 72 aa10.58□□□□□ -0.72
USP48-201ENST00000308271 A8MUU9 505 aa10.58□□□□□ -0.72
USP48-201ENST00000308271 CELSR1Q9NYQ6 3014 aa10.58□□□□□ -0.72
USP48-201ENST00000308271 TENM2Q9NT68 2774 aa10.57□□□□□ -0.72
USP48-201ENST00000308271 C20orf166-AS1Q96NR2 134 aa10.55□□□□□ -0.72
USP48-201ENST00000308271 SMG1Q96Q15 3661 aaKnown RBP10.55□□□□□ -0.72
USP48-201ENST00000308271 LAMA5O15230 3695 aa10.53□□□□□ -0.72
USP48-201ENST00000308271 KRTAP13-3Q3SY46 172 aa10.52□□□□□ -0.73
USP48-201ENST00000308271 Q5VSD8 79 aa10.52□□□□□ -0.73
USP48-201ENST00000308271 KRTAP16-1A8MUX0 517 aa10.5□□□□□ -0.73
USP48-201ENST00000308271 H0YAA0 97 aa10.5□□□□□ -0.73
USP48-201ENST00000308271 KRTAP1-4P0C5Y4 121 aa10.47□□□□□ -0.73
USP48-201ENST00000308271 NDUFAF8A1L188 74 aa10.45□□□□□ -0.74
USP48-201ENST00000308271 SEC61BP60468 96 aaKnown RBP10.43□□□□□ -0.74
USP48-201ENST00000308271 FBN1P35555 2871 aaKnown RBP10.43□□□□□ -0.74
USP48-201ENST00000308271 DMDP11532 3685 aa10.41□□□□□ -0.74
USP48-201ENST00000308271 VWFP04275 2813 aa10.4□□□□□ -0.74
USP48-201ENST00000308271 OTOGQ6ZRI0 2925 aa10.4□□□□□ -0.74
USP48-201ENST00000308271 PDZD2O15018 2839 aa10.37□□□□□ -0.75
USP48-201ENST00000308271 TGP01266 2768 aa10.37□□□□□ -0.75
USP48-201ENST00000308271 ZFHX3Q15911 3703 aa10.36□□□□□ -0.75
USP48-201ENST00000308271 M0R2T5 61 aa10.28□□□□□ -0.76
USP48-201ENST00000308271 SRRM2Q9UQ35 2752 aaKnown RBP10.26□□□□□ -0.77
USP48-201ENST00000308271 SVEP1Q4LDE5 3571 aa10.24□□□□□ -0.77
USP48-201ENST00000308271 C10orf95Q9H7T3 257 aa10.18□□□□□ -0.78
USP48-201ENST00000308271 NBPF19A0A087WUL8 3843 aa10.11□□□□□ -0.79
USP48-201ENST00000308271 PLAC4Q8WY50 150 aa10.03□□□□□ -0.8
USP48-201ENST00000308271 XP32Q5T750 250 aa10.02□□□□□ -0.81
USP48-201ENST00000308271 P0C880 135 aa10□□□□□ -0.81
USP48-201ENST00000308271 CUBNO60494 3623 aa9.97□□□□□ -0.81
USP48-201ENST00000308271 SPENQ96T58 3664 aaKnown RBP9.96□□□□□ -0.81
USP48-201ENST00000308271 PP632Q6XCG6 107 aa9.92□□□□□ -0.82
USP48-201ENST00000308271 CSMD2Q7Z408 3487 aa9.86□□□□□ -0.83
USP48-201ENST00000308271 TNP1P09430 55 aa9.86□□□□□ -0.83
USP48-201ENST00000308271 KRTAP3-1Q9BYR8 98 aa9.81□□□□□ -0.84
USP48-201ENST00000308271 BSNQ9UPA5 3926 aa9.79□□□□□ -0.84
USP48-201ENST00000308271 FBN3Q75N90 2809 aa9.74□□□□□ -0.85
USP48-201ENST00000308271 ANK3Q12955 4377 aaKnown RBP9.73□□□□□ -0.85
USP48-201ENST00000308271 TPRXLQ17RH7 258 aa9.7□□□□□ -0.86
USP48-201ENST00000308271 KRTAP12-2P59991 146 aa9.68□□□□□ -0.86
USP48-201ENST00000308271 KRTAP10-8P60410 259 aa9.66□□□□□ -0.86
USP48-201ENST00000308271 KRTAP12-1P59990 96 aa9.59□□□□□ -0.87
USP48-201ENST00000308271 TRRAPQ9Y4A5 3859 aa9.57□□□□□ -0.88
USP48-201ENST00000308271 KRTAP10-6P60371 365 aaPredicted RBP9.56□□□□□ -0.88
USP48-201ENST00000308271 MEGF8Q7Z7M0 2845 aa9.55□□□□□ -0.88
USP48-201ENST00000308271 COL7A1Q02388 2944 aa9.53□□□□□ -0.88
USP48-201ENST00000308271 KRTAP13-4Q3LI77 160 aa9.51□□□□□ -0.89
USP48-201ENST00000308271 A0A1B0GVY2 172 aa9.48□□□□□ -0.89
USP48-201ENST00000308271 VPS13CQ709C8 3753 aa9.41□□□□□ -0.9
USP48-201ENST00000308271 KRTAP3-2Q9BYR7 98 aa9.28□□□□□ -0.92
USP48-201ENST00000308271 KRTAP15-1Q3LI76 137 aa9.26□□□□□ -0.93
USP48-201ENST00000308271 KRTAP3-3Q9BYR6 98 aa9.24□□□□□ -0.93
USP48-201ENST00000308271 HUWE1Q7Z6Z7 4374 aaKnown RBP9.13□□□□□ -0.95
USP48-201ENST00000308271 AKAP9Q99996 3911 aa8.99□□□□□ -0.97
USP48-201ENST00000308271 KRTAP10-10P60014 251 aa8.98□□□□□ -0.97
USP48-201ENST00000308271 ZNF469Q96JG9 3925 aaPredicted RBP8.98□□□□□ -0.97
USP48-201ENST00000308271 KRTAP10-4P60372 401 aaPredicted RBP8.95□□□□□ -0.98
USP48-201ENST00000308271 CSMD3Q7Z407 3707 aa8.88□□□□□ -0.99
USP48-201ENST00000308271 MT1HL1P0DM35 61 aa8.83□□□□□ -1
USP48-201ENST00000308271 PRO2289Q9P1D8 64 aa8.82□□□□□ -1
USP48-201ENST00000308271 DNHD1Q96M86 4753 aa8.81□□□□□ -1
USP48-201ENST00000308271 DNAH9Q9NYC9 4486 aa8.69□□□□□ -1.02
USP48-201ENST00000308271 KRTAP4-5Q9BYR2 181 aa8.68□□□□□ -1.02
USP48-201ENST00000308271 DNAH1Q9P2D7 4330 aa8.64□□□□□ -1.03
USP48-201ENST00000308271 DNAH10Q8IVF4 4471 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms