RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 Q5VSD8 79 aa9.73□□□□□ -0.85
PHRF1-201ENST00000264555 NOTCH2NLQ7Z3S9 236 aa9.71□□□□□ -0.86
PHRF1-201ENST00000264555 RELNP78509 3460 aa9.69□□□□□ -0.86
PHRF1-201ENST00000264555 LINC01554Q52M75 96 aa9.68□□□□□ -0.86
PHRF1-201ENST00000264555 WDFY3Q8IZQ1 3526 aa9.67□□□□□ -0.86
PHRF1-201ENST00000264555 MXRA5Q9NR99 2828 aa9.64□□□□□ -0.87
PHRF1-201ENST00000264555 S4R3F8 94 aa9.63□□□□□ -0.87
PHRF1-201ENST00000264555 LUZP6Q538Z0 58 aa9.63□□□□□ -0.87
PHRF1-201ENST00000264555 RPS29P62273 56 aaKnown RBP9.61□□□□□ -0.87
PHRF1-201ENST00000264555 LAMA5O15230 3695 aa9.6□□□□□ -0.87
PHRF1-201ENST00000264555 DMDP11532 3685 aa9.6□□□□□ -0.87
PHRF1-201ENST00000264555 CSAG1Q6PB30 78 aa9.6□□□□□ -0.87
PHRF1-201ENST00000264555 KRTAP13-2Q52LG2 175 aa9.59□□□□□ -0.87
PHRF1-201ENST00000264555 TENM4Q6N022 2769 aa9.58□□□□□ -0.88
PHRF1-201ENST00000264555 ZFHX4Q86UP3 3567 aa9.55□□□□□ -0.88
PHRF1-201ENST00000264555 KRTAP21-3Q3LHN1 58 aa9.54□□□□□ -0.88
PHRF1-201ENST00000264555 MUC3AQ02505 3323 aa9.54□□□□□ -0.88
PHRF1-201ENST00000264555 PRAC1Q96KF2 57 aa9.52□□□□□ -0.89
PHRF1-201ENST00000264555 H3BS24 57 aa9.51□□□□□ -0.89
PHRF1-201ENST00000264555 ASPMQ8IZT6 3477 aa9.5□□□□□ -0.89
PHRF1-201ENST00000264555 SEC61BP60468 96 aaKnown RBP9.49□□□□□ -0.89
PHRF1-201ENST00000264555 DCHS1Q96JQ0 3298 aa9.48□□□□□ -0.89
PHRF1-201ENST00000264555 DMBT1Q9UGM3 2413 aaPredicted RBP9.41□□□□□ -0.9
PHRF1-201ENST00000264555 H1FX-AS1Q4G0G2 97 aa9.41□□□□□ -0.9
PHRF1-201ENST00000264555 CAMK2N1Q7Z7J9 78 aa9.37□□□□□ -0.91
PHRF1-201ENST00000264555 PDZD2O15018 2839 aa9.36□□□□□ -0.91
PHRF1-201ENST00000264555 RPL37P61927 97 aaKnown RBP9.34□□□□□ -0.91
PHRF1-201ENST00000264555 CELSR1Q9NYQ6 3014 aa9.34□□□□□ -0.91
PHRF1-201ENST00000264555 R4GN34 69 aa9.33□□□□□ -0.92
PHRF1-201ENST00000264555 A0A0A0MQY5 61 aa9.32□□□□□ -0.92
PHRF1-201ENST00000264555 SPATA8Q6RVD6 105 aa9.32□□□□□ -0.92
PHRF1-201ENST00000264555 SMG1Q96Q15 3661 aaKnown RBP9.31□□□□□ -0.92
PHRF1-201ENST00000264555 M0R2T5 61 aa9.3□□□□□ -0.92
PHRF1-201ENST00000264555 TENM3Q9P273 2699 aa9.29□□□□□ -0.92
PHRF1-201ENST00000264555 ROMO1P60602 79 aa9.28□□□□□ -0.92
PHRF1-201ENST00000264555 KRTAP1-4P0C5Y4 121 aa9.26□□□□□ -0.93
PHRF1-201ENST00000264555 ADM2Q7Z4H4 148 aa9.22□□□□□ -0.93
PHRF1-201ENST00000264555 CSMD1Q96PZ7 3565 aa9.22□□□□□ -0.93
PHRF1-201ENST00000264555 A8MUU9 505 aa9.21□□□□□ -0.93
PHRF1-201ENST00000264555 TENM1Q9UKZ4 2725 aa9.2□□□□□ -0.94
PHRF1-201ENST00000264555 C20orf166-AS1Q96NR2 134 aa9.2□□□□□ -0.94
PHRF1-201ENST00000264555 M0QZ58 72 aa9.19□□□□□ -0.94
PHRF1-201ENST00000264555 A6NN06 94 aa9.14□□□□□ -0.95
PHRF1-201ENST00000264555 FLG2Q5D862 2391 aaPredicted RBP9.13□□□□□ -0.95
PHRF1-201ENST00000264555 OTOGQ6ZRI0 2925 aa9.12□□□□□ -0.95
PHRF1-201ENST00000264555 NBPF19A0A087WUL8 3843 aa9.09□□□□□ -0.95
PHRF1-201ENST00000264555 A8MU10 97 aa9.06□□□□□ -0.96
PHRF1-201ENST00000264555 SVEP1Q4LDE5 3571 aa9.04□□□□□ -0.96
PHRF1-201ENST00000264555 VWFP04275 2813 aa9.04□□□□□ -0.96
PHRF1-201ENST00000264555 SPENQ96T58 3664 aaKnown RBP9.02□□□□□ -0.97
PHRF1-201ENST00000264555 KRTAP16-1A8MUX0 517 aa9.01□□□□□ -0.97
PHRF1-201ENST00000264555 ANK3Q12955 4377 aaKnown RBP9□□□□□ -0.97
PHRF1-201ENST00000264555 BSNQ9UPA5 3926 aa8.99□□□□□ -0.97
PHRF1-201ENST00000264555 TENM2Q9NT68 2774 aa8.98□□□□□ -0.97
PHRF1-201ENST00000264555 KRTAP25-1Q3LHN0 102 aa8.97□□□□□ -0.97
PHRF1-201ENST00000264555 FBN1P35555 2871 aaKnown RBP8.93□□□□□ -0.98
PHRF1-201ENST00000264555 XP32Q5T750 250 aa8.93□□□□□ -0.98
PHRF1-201ENST00000264555 TGP01266 2768 aa8.85□□□□□ -0.99
PHRF1-201ENST00000264555 PLAC4Q8WY50 150 aa8.85□□□□□ -0.99
PHRF1-201ENST00000264555 KRTAP13-3Q3SY46 172 aa8.82□□□□□ -1
PHRF1-201ENST00000264555 A0A1B0GVY2 172 aa8.82□□□□□ -1
PHRF1-201ENST00000264555 PKD1L1Q8TDX9 2849 aa8.81□□□□□ -1
PHRF1-201ENST00000264555 ZFHX3Q15911 3703 aa8.8□□□□□ -1
PHRF1-201ENST00000264555 CSMD2Q7Z408 3487 aa8.8□□□□□ -1
PHRF1-201ENST00000264555 TPRXLQ17RH7 258 aa8.76□□□□□ -1.01
PHRF1-201ENST00000264555 KRTAP10-8P60410 259 aa8.7□□□□□ -1.02
PHRF1-201ENST00000264555 H0YAA0 97 aa8.68□□□□□ -1.02
PHRF1-201ENST00000264555 TRRAPQ9Y4A5 3859 aa8.67□□□□□ -1.02
PHRF1-201ENST00000264555 CUBNO60494 3623 aa8.64□□□□□ -1.03
PHRF1-201ENST00000264555 NDUFAF8A1L188 74 aa8.64□□□□□ -1.03
PHRF1-201ENST00000264555 TNP1P09430 55 aa8.49□□□□□ -1.05
PHRF1-201ENST00000264555 P0C880 135 aa8.47□□□□□ -1.05
PHRF1-201ENST00000264555 VPS13CQ709C8 3753 aa8.43□□□□□ -1.06
PHRF1-201ENST00000264555 FBN3Q75N90 2809 aa8.43□□□□□ -1.06
PHRF1-201ENST00000264555 MEGF8Q7Z7M0 2845 aa8.4□□□□□ -1.07
PHRF1-201ENST00000264555 HUWE1Q7Z6Z7 4374 aaKnown RBP8.38□□□□□ -1.07
PHRF1-201ENST00000264555 C10orf95Q9H7T3 257 aa8.37□□□□□ -1.07
PHRF1-201ENST00000264555 PP632Q6XCG6 107 aa8.35□□□□□ -1.07
PHRF1-201ENST00000264555 KRTAP3-1Q9BYR8 98 aa8.34□□□□□ -1.07
PHRF1-201ENST00000264555 SRRM2Q9UQ35 2752 aaKnown RBP8.27□□□□□ -1.08
PHRF1-201ENST00000264555 ZNF469Q96JG9 3925 aaPredicted RBP8.25□□□□□ -1.09
PHRF1-201ENST00000264555 KRTAP10-10P60014 251 aa8.18□□□□□ -1.1
PHRF1-201ENST00000264555 AKAP9Q99996 3911 aa8.17□□□□□ -1.1
PHRF1-201ENST00000264555 KRTAP12-2P59991 146 aa8.14□□□□□ -1.11
PHRF1-201ENST00000264555 KRTAP10-4P60372 401 aaPredicted RBP8.1□□□□□ -1.11
PHRF1-201ENST00000264555 MT1HL1P0DM35 61 aa8.07□□□□□ -1.12
PHRF1-201ENST00000264555 COL7A1Q02388 2944 aa8.07□□□□□ -1.12
PHRF1-201ENST00000264555 KRTAP12-1P59990 96 aa8.06□□□□□ -1.12
PHRF1-201ENST00000264555 DNAH9Q9NYC9 4486 aa8.04□□□□□ -1.12
PHRF1-201ENST00000264555 KRTAP10-6P60371 365 aaPredicted RBP8.04□□□□□ -1.12
PHRF1-201ENST00000264555 KRTAP13-4Q3LI77 160 aa7.97□□□□□ -1.13
PHRF1-201ENST00000264555 PRO2289Q9P1D8 64 aa7.96□□□□□ -1.14
PHRF1-201ENST00000264555 ALMS1Q8TCU4 4167 aa7.95□□□□□ -1.14
PHRF1-201ENST00000264555 KRTAP3-3Q9BYR6 98 aa7.87□□□□□ -1.15
PHRF1-201ENST00000264555 CSMD3Q7Z407 3707 aa7.83□□□□□ -1.16
PHRF1-201ENST00000264555 DNAH1Q9P2D7 4330 aa7.83□□□□□ -1.16
PHRF1-201ENST00000264555 KRTAP3-2Q9BYR7 98 aa7.82□□□□□ -1.16
PHRF1-201ENST00000264555 PLECQ15149 4684 aaKnown RBP7.82□□□□□ -1.16
PHRF1-201ENST00000264555 KRTAP4-5Q9BYR2 181 aa7.75□□□□□ -1.17
PHRF1-201ENST00000264555 DNAH5Q8TE73 4624 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms