RNA–Protein interactions for RNA: ENST00000263388.6

NOTCH3-201, Transcript of notch 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH3, Length 8,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-201ENST00000263388 KRTAP4-16G5E9R7 235 aaPredicted RBP10.32□□□□□ -0.76
NOTCH3-201ENST00000263388 PANO1I0J062 215 aa10.28□□□□□ -0.76
NOTCH3-201ENST00000263388 ATMQ13315 3056 aa10.28□□□□□ -0.76
NOTCH3-201ENST00000263388 SPATA8Q6RVD6 105 aa10.25□□□□□ -0.77
NOTCH3-201ENST00000263388 NF1P21359 2839 aa10.25□□□□□ -0.77
NOTCH3-201ENST00000263388 KRTAP29-1A8MX34 341 aaPredicted RBP10.24□□□□□ -0.77
NOTCH3-201ENST00000263388 TENM1Q9UKZ4 2725 aa10.24□□□□□ -0.77
NOTCH3-201ENST00000263388 EYSQ5T1H1 3165 aa10.23□□□□□ -0.77
NOTCH3-201ENST00000263388 KRTAP10-1P60331 282 aa10.23□□□□□ -0.77
NOTCH3-201ENST00000263388 NIPBLQ6KC79 2804 aaeCLIP10.22□□□□□ -0.77
NOTCH3-201ENST00000263388 KRTAP25-1Q3LHN0 102 aa10.22□□□□□ -0.77
NOTCH3-201ENST00000263388 WDFY3Q8IZQ1 3526 aa10.22□□□□□ -0.77
NOTCH3-201ENST00000263388 DCHS2Q6V1P9 2916 aa10.19□□□□□ -0.78
NOTCH3-201ENST00000263388 C20orf166-AS1Q96NR2 134 aa10.19□□□□□ -0.78
NOTCH3-201ENST00000263388 ZANQ9Y493 2812 aa10.19□□□□□ -0.78
NOTCH3-201ENST00000263388 KRTAP10-2P60368 255 aa10.18□□□□□ -0.78
NOTCH3-201ENST00000263388 LCE6AA0A183 80 aa10.13□□□□□ -0.79
NOTCH3-201ENST00000263388 RPS29P62273 56 aaKnown RBP10.12□□□□□ -0.79
NOTCH3-201ENST00000263388 FBN2P35556 2912 aa10.12□□□□□ -0.79
NOTCH3-201ENST00000263388 A0A087X002 238 aa10.11□□□□□ -0.79
NOTCH3-201ENST00000263388 A6NN06 94 aa10.09□□□□□ -0.79
NOTCH3-201ENST00000263388 CELSR1Q9NYQ6 3014 aa10.04□□□□□ -0.8
NOTCH3-201ENST00000263388 NDUFAF8A1L188 74 aa10.04□□□□□ -0.8
NOTCH3-201ENST00000263388 MYO15AQ9UKN7 3530 aa10.03□□□□□ -0.8
NOTCH3-201ENST00000263388 A8MUU9 505 aa10□□□□□ -0.81
NOTCH3-201ENST00000263388 NOTCH2NLQ7Z3S9 236 aa9.98□□□□□ -0.81
NOTCH3-201ENST00000263388 LOC400499M0QZD8 3231 aa9.98□□□□□ -0.81
NOTCH3-201ENST00000263388 HRNRQ86YZ3 2850 aaPredicted RBP9.97□□□□□ -0.81
NOTCH3-201ENST00000263388 PDZD2O15018 2839 aa9.92□□□□□ -0.82
NOTCH3-201ENST00000263388 TNP1P09430 55 aa9.86□□□□□ -0.83
NOTCH3-201ENST00000263388 TENM3Q9P273 2699 aa9.86□□□□□ -0.83
NOTCH3-201ENST00000263388 A8MU10 97 aa9.85□□□□□ -0.83
NOTCH3-201ENST00000263388 TGP01266 2768 aa9.84□□□□□ -0.83
NOTCH3-201ENST00000263388 KRTAP11-1Q8IUC1 163 aa9.84□□□□□ -0.83
NOTCH3-201ENST00000263388 C10orf95Q9H7T3 257 aa9.83□□□□□ -0.84
NOTCH3-201ENST00000263388 Q6ZRN7 208 aaPredicted RBP9.83□□□□□ -0.84
NOTCH3-201ENST00000263388 LAMA5O15230 3695 aa9.8□□□□□ -0.84
NOTCH3-201ENST00000263388 ASPMQ8IZT6 3477 aa9.8□□□□□ -0.84
NOTCH3-201ENST00000263388 NBPF19A0A087WUL8 3843 aa9.8□□□□□ -0.84
NOTCH3-201ENST00000263388 TENM4Q6N022 2769 aa9.79□□□□□ -0.84
NOTCH3-201ENST00000263388 MXRA5Q9NR99 2828 aa9.78□□□□□ -0.84
NOTCH3-201ENST00000263388 PP632Q6XCG6 107 aa9.78□□□□□ -0.84
NOTCH3-201ENST00000263388 KRTAP13-1Q8IUC0 172 aa9.78□□□□□ -0.84
NOTCH3-201ENST00000263388 KRTAP7-1Q8IUC3 87 aa9.72□□□□□ -0.85
NOTCH3-201ENST00000263388 KRTAP13-2Q52LG2 175 aa9.71□□□□□ -0.85
NOTCH3-201ENST00000263388 PKD1L1Q8TDX9 2849 aa9.64□□□□□ -0.87
NOTCH3-201ENST00000263388 VWFP04275 2813 aa9.63□□□□□ -0.87
NOTCH3-201ENST00000263388 DCHS1Q96JQ0 3298 aa9.57□□□□□ -0.88
NOTCH3-201ENST00000263388 RELNP78509 3460 aa9.53□□□□□ -0.88
NOTCH3-201ENST00000263388 ZFHX4Q86UP3 3567 aa9.51□□□□□ -0.89
NOTCH3-201ENST00000263388 CSMD1Q96PZ7 3565 aa9.51□□□□□ -0.89
NOTCH3-201ENST00000263388 SPENQ96T58 3664 aaKnown RBP9.49□□□□□ -0.89
NOTCH3-201ENST00000263388 SMG1Q96Q15 3661 aaKnown RBP9.41□□□□□ -0.9
NOTCH3-201ENST00000263388 ZFHX3Q15911 3703 aa9.38□□□□□ -0.91
NOTCH3-201ENST00000263388 P0C880 135 aa9.36□□□□□ -0.91
NOTCH3-201ENST00000263388 TENM2Q9NT68 2774 aa9.35□□□□□ -0.91
NOTCH3-201ENST00000263388 DMDP11532 3685 aa9.35□□□□□ -0.91
NOTCH3-201ENST00000263388 KRTAP10-8P60410 259 aa9.34□□□□□ -0.91
NOTCH3-201ENST00000263388 H0YAA0 97 aa9.32□□□□□ -0.92
NOTCH3-201ENST00000263388 SRRM2Q9UQ35 2752 aaKnown RBP9.29□□□□□ -0.92
NOTCH3-201ENST00000263388 KRTAP21-3Q3LHN1 58 aa9.29□□□□□ -0.92
NOTCH3-201ENST00000263388 PRO2289Q9P1D8 64 aa9.28□□□□□ -0.92
NOTCH3-201ENST00000263388 COL7A1Q02388 2944 aa9.28□□□□□ -0.92
NOTCH3-201ENST00000263388 XP32Q5T750 250 aa9.27□□□□□ -0.93
NOTCH3-201ENST00000263388 KRTAP1-4P0C5Y4 121 aa9.2□□□□□ -0.94
NOTCH3-201ENST00000263388 TPRXLQ17RH7 258 aa9.18□□□□□ -0.94
NOTCH3-201ENST00000263388 FBN1P35555 2871 aaKnown RBP9.1□□□□□ -0.95
NOTCH3-201ENST00000263388 SVEP1Q4LDE5 3571 aa9.08□□□□□ -0.96
NOTCH3-201ENST00000263388 CUBNO60494 3623 aa9.07□□□□□ -0.96
NOTCH3-201ENST00000263388 MEGF8Q7Z7M0 2845 aa9.05□□□□□ -0.96
NOTCH3-201ENST00000263388 VPS13CQ709C8 3753 aa9.02□□□□□ -0.97
NOTCH3-201ENST00000263388 A0A1B0GVY2 172 aa9□□□□□ -0.97
NOTCH3-201ENST00000263388 KRTAP10-10P60014 251 aa8.95□□□□□ -0.98
NOTCH3-201ENST00000263388 TRRAPQ9Y4A5 3859 aa8.94□□□□□ -0.98
NOTCH3-201ENST00000263388 FBN3Q75N90 2809 aa8.93□□□□□ -0.98
NOTCH3-201ENST00000263388 KRTAP13-3Q3SY46 172 aa8.92□□□□□ -0.98
NOTCH3-201ENST00000263388 BSNQ9UPA5 3926 aa8.8□□□□□ -1
NOTCH3-201ENST00000263388 OTOGQ6ZRI0 2925 aa8.79□□□□□ -1
NOTCH3-201ENST00000263388 MUC3AQ02505 3323 aa8.76□□□□□ -1.01
NOTCH3-201ENST00000263388 KRTAP13-4Q3LI77 160 aa8.7□□□□□ -1.02
NOTCH3-201ENST00000263388 KRTAP12-2P59991 146 aa8.69□□□□□ -1.02
NOTCH3-201ENST00000263388 AKAP9Q99996 3911 aa8.66□□□□□ -1.02
NOTCH3-201ENST00000263388 CSMD2Q7Z408 3487 aa8.6□□□□□ -1.03
NOTCH3-201ENST00000263388 KRTAP12-1P59990 96 aa8.53□□□□□ -1.04
NOTCH3-201ENST00000263388 CSMD3Q7Z407 3707 aa8.52□□□□□ -1.04
NOTCH3-201ENST00000263388 INE1O15225 51 aa8.46□□□□□ -1.06
NOTCH3-201ENST00000263388 KRTAP15-1Q3LI76 137 aa8.41□□□□□ -1.06
NOTCH3-201ENST00000263388 KRTAP3-1Q9BYR8 98 aa8.26□□□□□ -1.09
NOTCH3-201ENST00000263388 ZNF469Q96JG9 3925 aaPredicted RBP8.23□□□□□ -1.09
NOTCH3-201ENST00000263388 KRTAP10-6P60371 365 aaPredicted RBP8.14□□□□□ -1.11
NOTCH3-201ENST00000263388 ANK3Q12955 4377 aaKnown RBP7.99□□□□□ -1.13
NOTCH3-201ENST00000263388 KRTAP10-12P60413 245 aa7.9□□□□□ -1.14
NOTCH3-201ENST00000263388 KRTAP3-3Q9BYR6 98 aa7.8□□□□□ -1.16
NOTCH3-201ENST00000263388 LYSTQ99698 3801 aa7.79□□□□□ -1.16
NOTCH3-201ENST00000263388 ALMS1Q8TCU4 4167 aa7.79□□□□□ -1.16
NOTCH3-201ENST00000263388 KRTAP3-2Q9BYR7 98 aa7.79□□□□□ -1.16
NOTCH3-201ENST00000263388 KRTAP23-1A1A580 65 aa7.77□□□□□ -1.17
NOTCH3-201ENST00000263388 HUWE1Q7Z6Z7 4374 aaKnown RBP7.75□□□□□ -1.17
NOTCH3-201ENST00000263388 CRCT1Q9UGL9 99 aa7.72□□□□□ -1.17
NOTCH3-201ENST00000263388 MT1HL1P0DM35 61 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms