RNA–Protein interactions for RNA: ENST00000263388.6

NOTCH3-201, Transcript of notch 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH3, Length 8,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-201ENST00000263388 DCAF8L2P0C7V8 631 aa29.31■■■□□ 2.28
NOTCH3-201ENST00000263388 PELP1Q8IZL8 1130 aaKnown RBP28.35■■■□□ 2.13
NOTCH3-201ENST00000263388 SUPT5HO00267 1087 aaKnown RBP28.01■■■□□ 2.07
NOTCH3-201ENST00000263388 NISCHQ9Y2I1 1504 aa27.98■■■□□ 2.07
NOTCH3-201ENST00000263388 SHROOM4Q9ULL8 1493 aa27.42■■□□□ 1.98
NOTCH3-201ENST00000263388 APLP2Q06481 763 aa27.25■■□□□ 1.95
NOTCH3-201ENST00000263388 EHMT2Q96KQ7 1210 aa27.14■■□□□ 1.94
NOTCH3-201ENST00000263388 CCER1Q8TC90 406 aaPredicted RBP26.97■■□□□ 1.91
NOTCH3-201ENST00000263388 ERICH6Q7L0X2 663 aa26.97■■□□□ 1.91
NOTCH3-201ENST00000263388 FAM9AQ8IZU1 332 aaPredicted RBP26.87■■□□□ 1.89
NOTCH3-201ENST00000263388 MYT1Q01538 1121 aa26.84■■□□□ 1.89
NOTCH3-201ENST00000263388 CENPBP07199 599 aaPredicted RBP26.73■■□□□ 1.87
NOTCH3-201ENST00000263388 ZEB1P37275 1124 aaPredicted RBP26.64■■□□□ 1.85
NOTCH3-201ENST00000263388 PCGF6Q9BYE7 350 aa26.61■■□□□ 1.85
NOTCH3-201ENST00000263388 TTBK1Q5TCY1 1321 aaPredicted RBP26.37■■□□□ 1.81
NOTCH3-201ENST00000263388 NEFLP07196 543 aa26.2■■□□□ 1.78
NOTCH3-201ENST00000263388 TRIM41Q8WV44 630 aa26.1■■□□□ 1.77
NOTCH3-201ENST00000263388 RANGAP1P46060 587 aaPredicted RBP25.98■■□□□ 1.75
NOTCH3-201ENST00000263388 ATP1B4Q9UN42 357 aaPredicted RBP25.97■■□□□ 1.75
NOTCH3-201ENST00000263388 YTHDC1Q96MU7 727 aaKnown RBP25.92■■□□□ 1.74
NOTCH3-201ENST00000263388 UBTFP17480 764 aaKnown RBP25.9■■□□□ 1.74
NOTCH3-201ENST00000263388 DAXXQ9UER7 740 aaPredicted RBP25.73■■□□□ 1.71
NOTCH3-201ENST00000263388 TRIM26Q12899 539 aaPredicted RBP25.55■■□□□ 1.68
NOTCH3-201ENST00000263388 PPARGC1BQ86YN6 1023 aaKnown RBP25.23■■□□□ 1.63
NOTCH3-201ENST00000263388 HRCP23327 699 aa25.21■■□□□ 1.63
NOTCH3-201ENST00000263388 RTL5Q5HYW3 569 aaPredicted RBP25.09■■□□□ 1.61
NOTCH3-201ENST00000263388 POLR3GLQ9BT43 218 aa25.07■■□□□ 1.6
NOTCH3-201ENST00000263388 ZNF316A6NFI3 1004 aaPredicted RBP25.04■■□□□ 1.6
NOTCH3-201ENST00000263388 ITGAEP38570 1179 aa25.03■■□□□ 1.6
NOTCH3-201ENST00000263388 MYT1LQ9UL68 1186 aa25.01■■□□□ 1.59
NOTCH3-201ENST00000263388 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.95■■□□□ 1.58
NOTCH3-201ENST00000263388 HNRNPUL2Q1KMD3 747 aaKnown RBP24.95■■□□□ 1.58
NOTCH3-201ENST00000263388 DIEXFQ68CQ4 756 aaKnown RBP24.82■■□□□ 1.56
NOTCH3-201ENST00000263388 CLSPNQ9HAW4 1339 aa24.81■■□□□ 1.56
NOTCH3-201ENST00000263388 SLC4A1APQ9BWU0 796 aaKnown RBP24.72■■□□□ 1.55
NOTCH3-201ENST00000263388 LOC105371045A0A1W2PR82 267 aa24.72■■□□□ 1.55
NOTCH3-201ENST00000263388 CNGB1Q14028 1251 aaPredicted RBP24.68■■□□□ 1.54
NOTCH3-201ENST00000263388 CHIC1Q5VXU3 224 aa24.61■■□□□ 1.53
NOTCH3-201ENST00000263388 FAM50AQ14320 339 aaKnown RBP24.47■■□□□ 1.51
NOTCH3-201ENST00000263388 CDK11AQ9UQ88 783 aaPredicted RBP24.43■■□□□ 1.5
NOTCH3-201ENST00000263388 ANP32CO43423 234 aa24.39■■□□□ 1.5
NOTCH3-201ENST00000263388 ZBTB47Q9UFB7 747 aaPredicted RBP24.38■■□□□ 1.49
NOTCH3-201ENST00000263388 TRIM52Q96A61 297 aa24.33■■□□□ 1.49
NOTCH3-201ENST00000263388 NEUROD1Q13562 356 aa24.27■■□□□ 1.48
NOTCH3-201ENST00000263388 GTF3C3Q9Y5Q9 886 aa24.27■■□□□ 1.48
NOTCH3-201ENST00000263388 BCANQ96GW7 911 aa24.16■■□□□ 1.46
NOTCH3-201ENST00000263388 CANXP27824 592 aaKnown RBP24.14■■□□□ 1.46
NOTCH3-201ENST00000263388 GLIPR1L2Q4G1C9 344 aa24.13■■□□□ 1.45
NOTCH3-201ENST00000263388 ANP32AP39687 249 aaKnown RBP24.12■■□□□ 1.45
NOTCH3-201ENST00000263388 NEFMP07197 916 aa24.07■■□□□ 1.44
NOTCH3-201ENST00000263388 ZNF326Q5BKZ1 582 aaKnown RBP24.05■■□□□ 1.44
NOTCH3-201ENST00000263388 ANP32BQ92688 251 aaKnown RBP24.05■■□□□ 1.44
NOTCH3-201ENST00000263388 SLC24A1O60721 1099 aa23.93■■□□□ 1.42
NOTCH3-201ENST00000263388 ACIN1Q9UKV3 1341 aaKnown RBP23.87■■□□□ 1.41
NOTCH3-201ENST00000263388 ABCC9O60706 1549 aa23.82■■□□□ 1.4
NOTCH3-201ENST00000263388 EIF5BO60841 1220 aaKnown RBP23.82■■□□□ 1.4
NOTCH3-201ENST00000263388 BCL11AQ9H165 835 aa23.79■■□□□ 1.4
NOTCH3-201ENST00000263388 UPF2Q9HAU5 1272 aaKnown RBP23.77■■□□□ 1.4
NOTCH3-201ENST00000263388 HSP90AA1P07900 732 aaKnown RBP23.77■■□□□ 1.4
NOTCH3-201ENST00000263388 NPM2Q86SE8 214 aaKnown RBP23.69■■□□□ 1.38
NOTCH3-201ENST00000263388 FBLN2P98095 1184 aa23.66■■□□□ 1.38
NOTCH3-201ENST00000263388 TONSLQ96HA7 1378 aa23.65■■□□□ 1.38
NOTCH3-201ENST00000263388 PABPN1Q86U42 306 aaKnown RBP eCLIP23.65■■□□□ 1.38
NOTCH3-201ENST00000263388 SCRIBQ14160 1630 aa23.64■■□□□ 1.37
NOTCH3-201ENST00000263388 DCAF1Q9Y4B6 1507 aa23.62■■□□□ 1.37
NOTCH3-201ENST00000263388 FKBP8Q14318 412 aa23.57■■□□□ 1.36
NOTCH3-201ENST00000263388 CCDC180Q9P1Z9 1646 aa23.57■■□□□ 1.36
NOTCH3-201ENST00000263388 CSRNP3Q8WYN3 585 aa23.5■■□□□ 1.35
NOTCH3-201ENST00000263388 HNRNPUQ00839 825 aaKnown RBP eCLIP23.5■■□□□ 1.35
NOTCH3-201ENST00000263388 P3H3Q8IVL6 736 aa23.46■■□□□ 1.35
NOTCH3-201ENST00000263388 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.46■■□□□ 1.35
NOTCH3-201ENST00000263388 ZNF777Q9ULD5 760 aaPredicted RBP23.45■■□□□ 1.34
NOTCH3-201ENST00000263388 ESF1Q9H501 851 aaKnown RBP23.4■■□□□ 1.34
NOTCH3-201ENST00000263388 CCDC136Q96JN2 1154 aa23.4■■□□□ 1.34
NOTCH3-201ENST00000263388 TMC1Q8TDI8 760 aa23.38■■□□□ 1.33
NOTCH3-201ENST00000263388 FAM9BQ8IZU0 186 aa23.36■■□□□ 1.33
NOTCH3-201ENST00000263388 ARID3CA6NKF2 412 aa23.35■■□□□ 1.33
NOTCH3-201ENST00000263388 STAG3Q9UJ98 1225 aa23.32■■□□□ 1.32
NOTCH3-201ENST00000263388 CDK11BP21127 795 aaKnown RBP23.31■■□□□ 1.32
NOTCH3-201ENST00000263388 DDX10Q13206 875 aaKnown RBP23.31■■□□□ 1.32
NOTCH3-201ENST00000263388 NBR1Q14596 966 aa23.3■■□□□ 1.32
NOTCH3-201ENST00000263388 WDR43Q15061 677 aaKnown RBP eCLIP23.28■■□□□ 1.32
NOTCH3-201ENST00000263388 TNNT2P45379 298 aaPredicted RBP23.26■■□□□ 1.31
NOTCH3-201ENST00000263388 MYH16Q9H6N6 1097 aa23.23■■□□□ 1.31
NOTCH3-201ENST00000263388 CHGAP10645 457 aaKnown RBP23.19■■□□□ 1.3
NOTCH3-201ENST00000263388 SALL2Q9Y467 1007 aaPredicted RBP23.17■■□□□ 1.3
NOTCH3-201ENST00000263388 ANP32EQ9BTT0 268 aa23.17■■□□□ 1.3
NOTCH3-201ENST00000263388 BECN1Q14457 450 aa23.16■■□□□ 1.3
NOTCH3-201ENST00000263388 DDRGK1Q96HY6 314 aa23.15■■□□□ 1.3
NOTCH3-201ENST00000263388 MRS2Q9HD23 443 aa23.13■■□□□ 1.29
NOTCH3-201ENST00000263388 ZCCHC6Q5VYS8 1495 aaKnown RBP23.11■■□□□ 1.29
NOTCH3-201ENST00000263388 ARXQ96QS3 562 aa23.11■■□□□ 1.29
NOTCH3-201ENST00000263388 TRIM44Q96DX7 344 aaPredicted RBP23.07■■□□□ 1.28
NOTCH3-201ENST00000263388 MTUS2Q5JR59 1369 aa23.07■■□□□ 1.28
NOTCH3-201ENST00000263388 NPM1P06748 294 aaKnown RBP eCLIP23.04■■□□□ 1.28
NOTCH3-201ENST00000263388 GOLGA6L22H0YM25 854 aa23.03■■□□□ 1.28
NOTCH3-201ENST00000263388 NCLP19338 710 aaKnown RBP23.01■■□□□ 1.27
NOTCH3-201ENST00000263388 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.01■■□□□ 1.27
NOTCH3-201ENST00000263388 TSPY4P0CV99 314 aa23■■□□□ 1.27
NOTCH3-201ENST00000263388 TSPY10P0CW01 314 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms