RNA–Protein interactions for RNA: YPL089C

RLM1, Transcript of MADS-box transcription factor, yeast

Gene RLM1, Length 2,031 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RLM1	YPL089C	DCW1	P36091	449 aa		5.3	□□□□□ -1.56
RLM1	YPL089C	YDR344C	Q05510	147 aa		5.28	□□□□□ -1.56
RLM1	YPL089C	PSD2	P53037	1138 aa	Known RBP	5.25	□□□□□ -1.57
RLM1	YPL089C	PML39	Q03760	334 aa		5.25	□□□□□ -1.57
RLM1	YPL089C	YPL062W	Q02781	134 aa		5.24	□□□□□ -1.57
RLM1	YPL089C	ARH1	P48360	493 aa		5.24	□□□□□ -1.57
RLM1	YPL089C	SPT23	P35210	1082 aa		5.23	□□□□□ -1.57
RLM1	YPL089C	VPS29	P38759	282 aa		5.23	□□□□□ -1.57
RLM1	YPL089C	STS1	P38637	319 aa		5.21	□□□□□ -1.57
RLM1	YPL089C	TRK1	P12685	1235 aa		5.17	□□□□□ -1.58
RLM1	YPL089C	RTG3	P38165	486 aa		5.17	□□□□□ -1.58
RLM1	YPL089C	PEX29	Q03370	554 aa		5.14	□□□□□ -1.59
RLM1	YPL089C	YLR271W	Q06152	274 aa		5.14	□□□□□ -1.59
RLM1	YPL089C	RAS1	P01119	309 aa		5.13	□□□□□ -1.59
RLM1	YPL089C	PTC2	P39966	464 aa	Known RBP	5.1	□□□□□ -1.59
RLM1	YPL089C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	5.08	□□□□□ -1.6	not detected
RLM1	YPL089C	YML082W	Q04533	649 aa	Known RBP	5.08	□□□□□ -1.6
RLM1	YPL089C	HAP5	Q02516	242 aa		5.07	□□□□□ -1.6
RLM1	YPL089C	BNI4	P53858	892 aa		5.07	□□□□□ -1.6
RLM1	YPL089C	MID1	P41821	548 aa		5.06	□□□□□ -1.6
RLM1	YPL089C	GRE2	Q12068	342 aa	Known RBP	5.03	□□□□□ -1.6
RLM1	YPL089C	AMS1	P22855	1083 aa		5	□□□□□ -1.61
RLM1	YPL089C	GAR1	P28007	205 aa	Known RBP	4.98	□□□□□ -1.61
RLM1	YPL089C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	not detected
RLM1	YPL089C	ATH1	P48016	1211 aa		4.94	□□□□□ -1.62
RLM1	YPL089C	GYP1	Q08484	637 aa		4.9	□□□□□ -1.62
RLM1	YPL089C	GUT1	P32190	709 aa		4.9	□□□□□ -1.63
RLM1	YPL089C	GCR2	Q01722	534 aa		4.89	□□□□□ -1.63
RLM1	YPL089C	RCR1	P38212	213 aa		4.88	□□□□□ -1.63
RLM1	YPL089C	BRE2	P43132	505 aa		4.88	□□□□□ -1.63
RLM1	YPL089C	CST9	Q06032	482 aa		4.88	□□□□□ -1.63
RLM1	YPL089C	YEL077C	Q3E7X8	1277 aa		4.87	□□□□□ -1.63
RLM1	YPL089C	AI4	P03878	556 aa		4.85	□□□□□ -1.63
RLM1	YPL089C	MPH3	P0CE00	602 aa		4.85	□□□□□ -1.63
RLM1	YPL089C	MPC54	Q08550	464 aa		4.85	□□□□□ -1.63
RLM1	YPL089C	NMA111	P53920	997 aa		4.84	□□□□□ -1.64
RLM1	YPL089C	NST1	P53935	1240 aa		4.82	□□□□□ -1.64
RLM1	YPL089C	MGA2	P40578	1113 aa		4.81	□□□□□ -1.64
RLM1	YPL089C	YPR015C	Q12531	247 aa		4.8	□□□□□ -1.64
RLM1	YPL089C	MIF2	P35201	549 aa		4.79	□□□□□ -1.64
RLM1	YPL089C	SAS4	Q04003	481 aa		4.79	□□□□□ -1.64
RLM1	YPL089C	PTC3	P34221	468 aa	Known RBP	4.77	□□□□□ -1.65
RLM1	YPL089C	SSP1	P38871	571 aa		4.76	□□□□□ -1.65
RLM1	YPL089C	DPL1	Q05567	589 aa		4.75	□□□□□ -1.65
RLM1	YPL089C	TFA1	P36100	482 aa		4.75	□□□□□ -1.65
RLM1	YPL089C	SOL3	P38858	249 aa		4.75	□□□□□ -1.65
RLM1	YPL089C	ILV3	P39522	585 aa	Known RBP	4.75	□□□□□ -1.65
RLM1	YPL089C	MTC5	Q03897	1148 aa		4.75	□□□□□ -1.65
RLM1	YPL089C	MRF1	P30775	413 aa	Predicted RBP	4.73	□□□□□ -1.65
RLM1	YPL089C	SDH2	P21801	266 aa		4.73	□□□□□ -1.65
RLM1	YPL089C	RAM1	P22007	431 aa		4.73	□□□□□ -1.65
RLM1	YPL089C	ISU2	Q12056	156 aa		4.7	□□□□□ -1.66
RLM1	YPL089C	MET22	P32179	357 aa		4.68	□□□□□ -1.66
RLM1	YPL089C	EDS1	P38073	919 aa		4.68	□□□□□ -1.66
RLM1	YPL089C	ENV9	Q08651	330 aa		4.68	□□□□□ -1.66
RLM1	YPL089C	SLI15	P38283	698 aa		4.65	□□□□□ -1.67
RLM1	YPL089C	AIR1	P40507	360 aa	Known RBP	4.64	□□□□□ -1.67
RLM1	YPL089C	ERG12	P07277	443 aa		4.62	□□□□□ -1.67
RLM1	YPL089C	MAK11	P20484	414 aa	Known RBP	4.61	□□□□□ -1.67
RLM1	YPL089C	YGR273C	P53329	174 aa		4.61	□□□□□ -1.67
RLM1	YPL089C	YDR444W	Q04093	687 aa		4.61	□□□□□ -1.67
RLM1	YPL089C	PDR1	P12383	1068 aa		4.57	□□□□□ -1.68
RLM1	YPL089C	CDC4	P07834	779 aa		4.56	□□□□□ -1.68
RLM1	YPL089C	CLA4	P48562	842 aa		4.56	□□□□□ -1.68
RLM1	YPL089C	COQ8	P27697	501 aa		4.54	□□□□□ -1.68
RLM1	YPL089C	YDL176W	Q12027	708 aa		4.53	□□□□□ -1.68
RLM1	YPL089C	LCB5	Q06147	687 aa	Known RBP	4.52	□□□□□ -1.69
RLM1	YPL089C	PRT1	P06103	763 aa	Known RBP	4.51	□□□□□ -1.69
RLM1	YPL089C	CST6	P40535	587 aa		4.51	□□□□□ -1.69
RLM1	YPL089C	CDC73	Q06697	393 aa		4.5	□□□□□ -1.69
RLM1	YPL089C	LAM6	Q08001	693 aa		4.47	□□□□□ -1.69
RLM1	YPL089C	BUD20	Q08004	166 aa	Predicted RBP	4.46	□□□□□ -1.7
RLM1	YPL089C	RPP1B	P10622	106 aa	Known RBP	4.45	□□□□□ -1.7
RLM1	YPL089C	FRK1	Q03002	865 aa	Predicted RBP	4.45	□□□□□ -1.7
RLM1	YPL089C	NOP53	Q12080	455 aa	Known RBP	4.43	□□□□□ -1.7
RLM1	YPL089C	RAM2	P29703	316 aa		4.42	□□□□□ -1.7
RLM1	YPL089C	KEX1	P09620	729 aa		4.41	□□□□□ -1.7
RLM1	YPL089C	SPT16	P32558	1035 aa	Known RBP	4.41	□□□□□ -1.7
RLM1	YPL089C	TRK2	P28584	889 aa		4.4	□□□□□ -1.7
RLM1	YPL089C	HED1	Q03937	162 aa		4.39	□□□□□ -1.71
RLM1	YPL089C	RRD1	P40454	393 aa	Known RBP	4.37	□□□□□ -1.71
RLM1	YPL089C	YGR035C	P53222	116 aa		4.37	□□□□□ -1.71
RLM1	YPL089C	HST3	P53687	447 aa		4.37	□□□□□ -1.71
RLM1	YPL089C	ASH1	P34233	588 aa		4.36	□□□□□ -1.71
RLM1	YPL089C	CAF120	P53836	1060 aa		4.36	□□□□□ -1.71
RLM1	YPL089C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.35	□□□□□ -1.71	RIP-Chip
RLM1	YPL089C	BDP1	P46678	594 aa		4.34	□□□□□ -1.71
RLM1	YPL089C	STR2	P47164	639 aa		4.34	□□□□□ -1.71
RLM1	YPL089C	ISM1	P48526	1002 aa		4.34	□□□□□ -1.71
RLM1	YPL089C	NPL4	P33755	580 aa		4.34	□□□□□ -1.71
RLM1	YPL089C	PEX21	P50091	288 aa		4.34	□□□□□ -1.71
RLM1	YPL089C	YRR1	Q12172	810 aa		4.34	□□□□□ -1.71
RLM1	YPL089C	LSB3	P43603	459 aa	Known RBP	4.33	□□□□□ -1.72
RLM1	YPL089C	AFT1	P22149	690 aa		4.33	□□□□□ -1.72
RLM1	YPL089C	PUS1	Q12211	544 aa	Known RBP	4.33	□□□□□ -1.72
RLM1	YPL089C	PAT1	P25644	796 aa	Known RBP	4.3	□□□□□ -1.72
RLM1	YPL089C	GCD11	P32481	527 aa	Known RBP	4.3	□□□□□ -1.72
RLM1	YPL089C	NUD1	P32336	851 aa		4.29	□□□□□ -1.72
RLM1	YPL089C	ACO2	P39533	789 aa		4.29	□□□□□ -1.72
RLM1	YPL089C	ICP55	P40051	511 aa		4.28	□□□□□ -1.72

Retrieved 100 of 5,963 RNA–protein pairs in 48.5 ms