RNA–Protein interactions for RNA: YPL089C

RLM1, Transcript of MADS-box transcription factor, yeast

Gene RLM1, Length 2,031 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RLM1	YPL089C	FAP1	P53971	965 aa		10.19	□□□□□ -0.78
RLM1	YPL089C	PRY3	P47033	881 aa		9.62	□□□□□ -0.87
RLM1	YPL089C	MTC1	P47018	478 aa	Known RBP	9.35	□□□□□ -0.91
RLM1	YPL089C	HAA1	Q12753	694 aa	Known RBP	8.96	□□□□□ -0.98
RLM1	YPL089C	AAD16	Q02895	342 aa		8.91	□□□□□ -0.98
RLM1	YPL089C	YCK3	P39962	524 aa		8.85	□□□□□ -0.99
RLM1	YPL089C	PRI1	P10363	409 aa		8.71	□□□□□ -1.02
RLM1	YPL089C	TSR3	Q12094	313 aa	Known RBP	8.17	□□□□□ -1.1
RLM1	YPL089C	ISW2	Q08773	1120 aa		8.15	□□□□□ -1.1
RLM1	YPL089C	RPG1	P38249	964 aa	Known RBP	8.06	□□□□□ -1.12
RLM1	YPL089C	YGL015C	P33199	130 aa		8.02	□□□□□ -1.13
RLM1	YPL089C	BUD31	P25337	157 aa	Predicted RBP	7.97	□□□□□ -1.13
RLM1	YPL089C	MRPL32	P25348	183 aa		7.94	□□□□□ -1.14
RLM1	YPL089C	SIS1	P25294	352 aa	Known RBP	7.53	□□□□□ -1.2
RLM1	YPL089C	UBP9	P39967	754 aa		7.27	□□□□□ -1.25
RLM1	YPL089C	DRS1	P32892	752 aa	Known RBP	7.25	□□□□□ -1.25
RLM1	YPL089C	UBP10	P53874	792 aa	Predicted RBP	7.23	□□□□□ -1.25
RLM1	YPL089C	CDC27	P38042	758 aa		7.15	□□□□□ -1.27
RLM1	YPL089C	REB1	P21538	810 aa		7.14	□□□□□ -1.27
RLM1	YPL089C	MAP2	P38174	421 aa	Known RBP	7.13	□□□□□ -1.27
RLM1	YPL089C	RSE1	Q04693	1361 aa	Known RBP	7.13	□□□□□ -1.27
RLM1	YPL089C	TIF4632	P39936	914 aa	Known RBP	7	□□□□□ -1.29
RLM1	YPL089C	RPL17A	P05740	184 aa	Known RBP	6.99	□□□□□ -1.29
RLM1	YPL089C	RPL17B	P46990	184 aa	Known RBP	6.99	□□□□□ -1.29
RLM1	YPL089C	TGL3	P40308	642 aa		6.93	□□□□□ -1.3
RLM1	YPL089C	DIP2	Q12220	943 aa	Predicted RBP	6.88	□□□□□ -1.31
RLM1	YPL089C	SLX5	P32828	619 aa	Known RBP	6.79	□□□□□ -1.32
RLM1	YPL089C	YKR023W	P36119	530 aa	Known RBP	6.75	□□□□□ -1.33
RLM1	YPL089C	SCY1	P53009	804 aa		6.75	□□□□□ -1.33
RLM1	YPL089C	HO	P09932	586 aa		6.65	□□□□□ -1.35
RLM1	YPL089C	TFC8	Q12308	588 aa		6.64	□□□□□ -1.35
RLM1	YPL089C	DCD1	P06773	312 aa		6.63	□□□□□ -1.35
RLM1	YPL089C	YBL029C-A	Q3E756	94 aa		6.57	□□□□□ -1.36
RLM1	YPL089C	YJL171C	P46992	396 aa		6.55	□□□□□ -1.36
RLM1	YPL089C	SPT21	P35209	758 aa		6.47	□□□□□ -1.37
RLM1	YPL089C	VNX1	P42839	908 aa		6.43	□□□□□ -1.38
RLM1	YPL089C	SPP1	Q03012	353 aa		6.42	□□□□□ -1.38
RLM1	YPL089C	MST1	P07236	462 aa		6.4	□□□□□ -1.38
RLM1	YPL089C	AIR2	Q12476	344 aa	Known RBP	6.4	□□□□□ -1.38
RLM1	YPL089C	YOR238W	Q08634	303 aa		6.38	□□□□□ -1.39
RLM1	YPL089C	BCH2	P36122	765 aa		6.35	□□□□□ -1.39
RLM1	YPL089C	FKH1	P40466	484 aa		6.35	□□□□□ -1.39
RLM1	YPL089C	WSC3	Q12215	556 aa		6.28	□□□□□ -1.4
RLM1	YPL089C	BMT6	Q12291	365 aa		6.28	□□□□□ -1.4
RLM1	YPL089C	TIF11	P38912	153 aa	Known RBP	6.25	□□□□□ -1.41
RLM1	YPL089C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	6.15	□□□□□ -1.42	not detected
RLM1	YPL089C	AVT3	P36062	692 aa		6.15	□□□□□ -1.43
RLM1	YPL089C	LDB19	Q12502	818 aa		6.14	□□□□□ -1.43
RLM1	YPL089C	YAP5	P40574	245 aa		6.13	□□□□□ -1.43
RLM1	YPL089C	EPS1	P40557	701 aa		6.12	□□□□□ -1.43
RLM1	YPL089C	BDF1	P35817	686 aa		6.11	□□□□□ -1.43
RLM1	YPL089C	GTT3	P39996	337 aa		6.11	□□□□□ -1.43
RLM1	YPL089C	ULI1	P43604	169 aa		6.08	□□□□□ -1.44
RLM1	YPL089C	RGA2	Q06407	1009 aa		6.06	□□□□□ -1.44
RLM1	YPL089C	IOC2	Q12072	812 aa		6.01	□□□□□ -1.45
RLM1	YPL089C	RIM101	P33400	625 aa		5.94	□□□□□ -1.46
RLM1	YPL089C	BCK2	P33306	851 aa		5.94	□□□□□ -1.46
RLM1	YPL089C	RTG1	P32607	177 aa		5.91	□□□□□ -1.46
RLM1	YPL089C	NCR1	Q12200	1170 aa		5.91	□□□□□ -1.46
RLM1	YPL089C	EAP1	P36041	632 aa	Known RBP	5.89	□□□□□ -1.47
RLM1	YPL089C	MSB4	Q12317	492 aa		5.85	□□□□□ -1.47
RLM1	YPL089C	BBC1	P47068	1157 aa		5.82	□□□□□ -1.48
RLM1	YPL089C	TFG1	P41895	735 aa	Predicted RBP	5.81	□□□□□ -1.48
RLM1	YPL089C	SEC61	P32915	480 aa		5.8	□□□□□ -1.48
RLM1	YPL089C	RGA1	P39083	1007 aa		5.79	□□□□□ -1.48
RLM1	YPL089C	YNL035C	P53962	389 aa	Known RBP	5.79	□□□□□ -1.48
RLM1	YPL089C	TRP5	P00931	707 aa	Known RBP	5.75	□□□□□ -1.49
RLM1	YPL089C	CHL1	P22516	861 aa	Predicted RBP	5.75	□□□□□ -1.49
RLM1	YPL089C	PTP3	P40048	928 aa		5.75	□□□□□ -1.49
RLM1	YPL089C	PIB1	Q06651	286 aa		5.73	□□□□□ -1.49
RLM1	YPL089C	YIL055C	P40523	627 aa	Known RBP	5.72	□□□□□ -1.49
RLM1	YPL089C	SAP30	P38429	201 aa		5.7	□□□□□ -1.5
RLM1	YPL089C	SET4	P42948	560 aa		5.7	□□□□□ -1.5
RLM1	YPL089C	XDJ1	P39102	459 aa		5.69	□□□□□ -1.5
RLM1	YPL089C	YOL036W	Q08206	761 aa		5.68	□□□□□ -1.5
RLM1	YPL089C	OXP1	P28273	1286 aa		5.67	□□□□□ -1.5
RLM1	YPL089C	PRE3	P38624	215 aa		5.67	□□□□□ -1.5
RLM1	YPL089C	DPS1	P04802	557 aa	Known RBP	5.66	□□□□□ -1.5
RLM1	YPL089C	AI2	P03876	854 aa		5.64	□□□□□ -1.51
RLM1	YPL089C	YDL129W	Q07555	291 aa		5.61	□□□□□ -1.51
RLM1	YPL089C	VRP1	P37370	817 aa		5.6	□□□□□ -1.51
RLM1	YPL089C	RSM7	P47150	247 aa		5.59	□□□□□ -1.51
RLM1	YPL089C	JIP4	Q03361	876 aa		5.54	□□□□□ -1.52
RLM1	YPL089C	DAN4	P47179	1161 aa		5.49	□□□□□ -1.53
RLM1	YPL089C	SRC1	Q03707	834 aa		5.45	□□□□□ -1.54
RLM1	YPL089C	ELP4	Q02884	456 aa	Known RBP	5.44	□□□□□ -1.54
RLM1	YPL089C	SAM3	Q08986	587 aa		5.43	□□□□□ -1.54
RLM1	YPL089C	ABP1	P15891	592 aa	Known RBP	5.41	□□□□□ -1.54
RLM1	YPL089C	VMA1	P17255	1071 aa	Known RBP	5.4	□□□□□ -1.54
RLM1	YPL089C	YAH1	Q12184	172 aa	Known RBP	5.38	□□□□□ -1.55
RLM1	YPL089C	DBP1	P24784	617 aa	Known RBP	5.37	□□□□□ -1.55
RLM1	YPL089C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	5.37	□□□□□ -1.55	not detected
RLM1	YPL089C	HTA1	P04911	132 aa	Known RBP	5.36	□□□□□ -1.55
RLM1	YPL089C	HTA2	P04912	132 aa		5.36	□□□□□ -1.55
RLM1	YPL089C	MRM1	P25270	412 aa		5.36	□□□□□ -1.55
RLM1	YPL089C	PTC4	P38089	393 aa		5.35	□□□□□ -1.55
RLM1	YPL089C	YFR006W	P43590	535 aa		5.33	□□□□□ -1.56
RLM1	YPL089C	BFR2	Q06631	534 aa	Known RBP	5.33	□□□□□ -1.56
RLM1	YPL089C	GYP5	Q12344	894 aa		5.33	□□□□□ -1.56
RLM1	YPL089C	YEL023C	P39992	682 aa		5.31	□□□□□ -1.56

Retrieved 100 of 5,963 RNA–protein pairs in 81.2 ms