RNA–Protein interactions for RNA: YNL224C

SQS1, Transcript of Protein that stimulates the ATPase and helicase activities of Prp43p, yeast

Gene SQS1, Length 2,304 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SQS1	YNL224C	SPT21	P35209	758 aa		4.18	□□□□□ -1.74
SQS1	YNL224C	TLG1	Q03322	224 aa		4.18	□□□□□ -1.74
SQS1	YNL224C	NOP8	Q08287	484 aa	Predicted RBP	4.18	□□□□□ -1.74
SQS1	YNL224C	SAS10	Q12136	610 aa	Predicted RBP	4.18	□□□□□ -1.74
SQS1	YNL224C	TAF13	P11747	167 aa		4.17	□□□□□ -1.74
SQS1	YNL224C	FAR11	P53917	953 aa		4.17	□□□□□ -1.74
SQS1	YNL224C	YOR238W	Q08634	303 aa		4.17	□□□□□ -1.74
SQS1	YNL224C	RPS0A	P32905	252 aa	Known RBP	4.16	□□□□□ -1.74
SQS1	YNL224C	SSP1	P38871	571 aa		4.16	□□□□□ -1.74
SQS1	YNL224C	BUD21	Q08492	214 aa	Predicted RBP	4.16	□□□□□ -1.74
SQS1	YNL224C	YML020W	Q03722	664 aa		4.16	□□□□□ -1.74
SQS1	YNL224C	SPT16	P32558	1035 aa	Known RBP	4.15	□□□□□ -1.75
SQS1	YNL224C	OSW7	P43611	510 aa		4.14	□□□□□ -1.75
SQS1	YNL224C	MCM1	P11746	286 aa		4.13	□□□□□ -1.75
SQS1	YNL224C	ASF1	P32447	279 aa		4.13	□□□□□ -1.75
SQS1	YNL224C	MPP10	P47083	593 aa	Known RBP	4.13	□□□□□ -1.75
SQS1	YNL224C	PDR1	P12383	1068 aa		4.12	□□□□□ -1.75
SQS1	YNL224C	YJR008W	P47085	338 aa		4.12	□□□□□ -1.75
SQS1	YNL224C	NOP53	Q12080	455 aa	Known RBP	4.12	□□□□□ -1.75
SQS1	YNL224C	RNA1	P11745	407 aa	Known RBP	4.12	□□□□□ -1.75
SQS1	YNL224C	SPC42	P36094	363 aa		4.12	□□□□□ -1.75
SQS1	YNL224C	SSF1	P38789	453 aa	Predicted RBP	4.12	□□□□□ -1.75
SQS1	YNL224C	ZDS1	P50111	915 aa	Known RBP	4.12	□□□□□ -1.75
SQS1	YNL224C	KIP3	P53086	805 aa	Known RBP	4.12	□□□□□ -1.75
SQS1	YNL224C	RTS3	P53289	263 aa		4.12	□□□□□ -1.75
SQS1	YNL224C	HSP82	P02829	709 aa	Known RBP	4.1	□□□□□ -1.75
SQS1	YNL224C	GEF1	P37020	779 aa		4.1	□□□□□ -1.75
SQS1	YNL224C	BRE1	Q07457	700 aa	Known RBP	4.1	□□□□□ -1.75
SQS1	YNL224C	ENP1	P38333	483 aa	Known RBP	4.1	□□□□□ -1.75
SQS1	YNL224C	TIF11	P38912	153 aa	Known RBP	4.1	□□□□□ -1.75
SQS1	YNL224C	SEC9	P40357	651 aa		4.1	□□□□□ -1.75
SQS1	YNL224C	TCB2	P48231	1178 aa		4.1	□□□□□ -1.75
SQS1	YNL224C	FPR4	Q06205	392 aa	Predicted RBP	4.1	□□□□□ -1.75
SQS1	YNL224C	YNL011C	P53980	444 aa		4.09	□□□□□ -1.75
SQS1	YNL224C	AIM21	P40563	679 aa		4.09	□□□□□ -1.76
SQS1	YNL224C	PLP2	Q12017	286 aa		4.09	□□□□□ -1.76
SQS1	YNL224C	WSC3	Q12215	556 aa		4.09	□□□□□ -1.76
SQS1	YNL224C	TY1B-A	O13527	1196 aa	Known RBP	4.08	□□□□□ -1.76
SQS1	YNL224C	FPR3	P38911	411 aa	Known RBP	4.07	□□□□□ -1.76
SQS1	YNL224C	YMR196W	Q04336	1088 aa		4.07	□□□□□ -1.76
SQS1	YNL224C	ETT1	Q08421	412 aa	Known RBP	4.07	□□□□□ -1.76
SQS1	YNL224C	YGR130C	P53278	816 aa		4.07	□□□□□ -1.76
SQS1	YNL224C	RAD2	P07276	1031 aa		4.06	□□□□□ -1.76
SQS1	YNL224C	SEC20	P28791	383 aa		4.06	□□□□□ -1.76
SQS1	YNL224C	FUN12	P39730	1002 aa	Known RBP	4.06	□□□□□ -1.76
SQS1	YNL224C	DOS2	P54858	310 aa		4.06	□□□□□ -1.76
SQS1	YNL224C	CEF1	Q03654	590 aa	Predicted RBP	4.06	□□□□□ -1.76
SQS1	YNL224C	PSK2	Q08217	1101 aa		4.06	□□□□□ -1.76
SQS1	YNL224C	RPA135	P22138	1203 aa	Known RBP	4.05	□□□□□ -1.76
SQS1	YNL224C	LEM3	P42838	414 aa		4.05	□□□□□ -1.76
SQS1	YNL224C	YTA7	P40340	1379 aa		4.05	□□□□□ -1.76
SQS1	YNL224C	GAL11	P19659	1081 aa		4.05	□□□□□ -1.76
SQS1	YNL224C	PKH1	Q03407	766 aa		4.05	□□□□□ -1.76
SQS1	YNL224C	TY4A-J	P47023	414 aa		4.04	□□□□□ -1.76
SQS1	YNL224C	YSH1	Q06224	779 aa	Predicted RBP	4.04	□□□□□ -1.76
SQS1	YNL224C	SSA4	P22202	642 aa	Known RBP	4.04	□□□□□ -1.76
SQS1	YNL224C	RAD51	P25454	400 aa		4.04	□□□□□ -1.76
SQS1	YNL224C	PAM1	P37304	830 aa	Known RBP	4.04	□□□□□ -1.76
SQS1	YNL224C	PEA2	P40091	420 aa		4.03	□□□□□ -1.76
SQS1	YNL224C	RPT2	P40327	437 aa	Known RBP	4.03	□□□□□ -1.76
SQS1	YNL224C	HOS4	P40480	1083 aa		4.03	□□□□□ -1.76
SQS1	YNL224C	PIL1	P53252	339 aa	Known RBP	4.03	□□□□□ -1.76
SQS1	YNL224C	MPE1	P35728	441 aa	Known RBP	4.03	□□□□□ -1.77
SQS1	YNL224C	PMC1	P38929	1173 aa	Predicted RBP	4.03	□□□□□ -1.77
SQS1	YNL224C	MRX12	P47084	519 aa		4.03	□□□□□ -1.77
SQS1	YNL224C	GIR2	Q03768	265 aa	Predicted RBP	4.03	□□□□□ -1.77
SQS1	YNL224C	SUP35	P05453	685 aa	Known RBP	4.02	□□□□□ -1.77
SQS1	YNL224C	SPC110	P32380	944 aa		4.02	□□□□□ -1.77
SQS1	YNL224C	BCH2	P36122	765 aa		4.02	□□□□□ -1.77
SQS1	YNL224C	GDE1	Q02979	1223 aa		4.02	□□□□□ -1.77
SQS1	YNL224C	LDB19	Q12502	818 aa		4.02	□□□□□ -1.77
SQS1	YNL224C	RGA1	P39083	1007 aa		4.01	□□□□□ -1.77
SQS1	YNL224C	DJP1	P40564	432 aa		4.01	□□□□□ -1.77
SQS1	YNL224C	MTR4	P47047	1073 aa	Known RBP	4.01	□□□□□ -1.77
SQS1	YNL224C	VPS4	P52917	437 aa		4.01	□□□□□ -1.77
SQS1	YNL224C	NFU1	P32860	256 aa		4.01	□□□□□ -1.77
SQS1	YNL224C	NMD2	P38798	1089 aa	Known RBP	4.01	□□□□□ -1.77
SQS1	YNL224C	NMD3	P38861	518 aa	Known RBP	4.01	□□□□□ -1.77
SQS1	YNL224C	SLX8	P40072	274 aa		4.01	□□□□□ -1.77
SQS1	YNL224C	TAF1	P46677	1066 aa		4.01	□□□□□ -1.77
SQS1	YNL224C	MEH1	Q02205	184 aa		4.01	□□□□□ -1.77
SQS1	YNL224C	ECM16	Q04217	1267 aa	Known RBP	4.01	□□□□□ -1.77
SQS1	YNL224C	UBX5	Q06682	500 aa		4.01	□□□□□ -1.77
SQS1	YNL224C	RIX7	Q07844	837 aa	Known RBP	4.01	□□□□□ -1.77
SQS1	YNL224C	CFT2	Q12102	859 aa	Predicted RBP	4.01	□□□□□ -1.77
SQS1	YNL224C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4	□□□□□ -1.77	not detected
SQS1	YNL224C	FAF1	P40546	346 aa	Predicted RBP	4	□□□□□ -1.77
SQS1	YNL224C	CLF1	Q12309	687 aa	Predicted RBP	4	□□□□□ -1.77
SQS1	YNL224C	RRP14	P36080	434 aa	Known RBP	4	□□□□□ -1.77
SQS1	YNL224C	OCA5	P38738	679 aa		4	□□□□□ -1.77
SQS1	YNL224C	RCF1	Q03713	159 aa		4	□□□□□ -1.77
SQS1	YNL224C	PIM1	P36775	1133 aa		3.99	□□□□□ -1.77
SQS1	YNL224C	NNF2	P53253	936 aa		3.99	□□□□□ -1.77
SQS1	YNL224C	CDC45	Q08032	650 aa		3.99	□□□□□ -1.77
SQS1	YNL224C	INO80	P53115	1489 aa		3.99	□□□□□ -1.77
SQS1	YNL224C	HXT5	P38695	592 aa		3.98	□□□□□ -1.77
SQS1	YNL224C	PES4	P39684	611 aa		3.98	□□□□□ -1.77
SQS1	YNL224C	AIM20	P40451	204 aa		3.98	□□□□□ -1.77
SQS1	YNL224C	CKB1	P43639	278 aa		3.98	□□□□□ -1.77
SQS1	YNL224C	YDR341C	Q05506	607 aa	Known RBP	3.98	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 41.3 ms