RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeastyeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBX4YMR067C ATH1P48016 1211 aa7.44□□□□□ -1.22
UBX4YMR067C RTG1P32607 177 aa7.43□□□□□ -1.22
UBX4YMR067C DCW1P36091 449 aa7.43□□□□□ -1.22
UBX4YMR067C YJL171CP46992 396 aa7.4□□□□□ -1.22
UBX4YMR067C YEL023CP39992 682 aa7.39□□□□□ -1.23
UBX4YMR067C PTC4P38089 393 aa7.38□□□□□ -1.23
UBX4YMR067C SET1P38827 1080 aaKnown RBP7.38□□□□□ -1.23
UBX4YMR067C NCR1Q12200 1170 aa7.38□□□□□ -1.23
UBX4YMR067C DAN4P47179 1161 aa7.37□□□□□ -1.23
UBX4YMR067C TFG1P41895 735 aaPredicted RBP7.36□□□□□ -1.23
UBX4YMR067C IFH1P39520 1085 aa7.34□□□□□ -1.23
UBX4YMR067C BMT6Q12291 365 aa7.34□□□□□ -1.23
UBX4YMR067C NST1P53935 1240 aa7.3□□□□□ -1.24
UBX4YMR067C YDL129WQ07555 291 aa7.3□□□□□ -1.24
UBX4YMR067C AI4P03878 556 aa7.29□□□□□ -1.24
UBX4YMR067C SOL3P38858 249 aa7.28□□□□□ -1.24
UBX4YMR067C YGR273CP53329 174 aa7.27□□□□□ -1.25
UBX4YMR067C MPH3P0CE00 602 aa7.26□□□□□ -1.25
UBX4YMR067C YPR148CQ06523 435 aa7.25□□□□□ -1.25
UBX4YMR067C SAP30P38429 201 aa7.23□□□□□ -1.25
UBX4YMR067C DMA1P38823 416 aa7.21□□□□□ -1.26
UBX4YMR067C PML39Q03760 334 aa7.21□□□□□ -1.26
UBX4YMR067C ILV3P39522 585 aaKnown RBP7.19□□□□□ -1.26
UBX4YMR067C RQC2Q12532 1038 aaKnown RBP7.19□□□□□ -1.26
UBX4YMR067C KEX1P09620 729 aa7.15□□□□□ -1.26
UBX4YMR067C CHL1P22516 861 aaPredicted RBP7.15□□□□□ -1.26
UBX4YMR067C PRE3P38624 215 aa7.14□□□□□ -1.27
UBX4YMR067C UBP14P38237 781 aaKnown RBP7.13□□□□□ -1.27
UBX4YMR067C YLR326WQ06170 240 aaKnown RBP7.13□□□□□ -1.27
UBX4YMR067C MID1P41821 548 aa7.12□□□□□ -1.27
UBX4YMR067C PEX29Q03370 554 aa7.12□□□□□ -1.27
UBX4YMR067C SLI15P38283 698 aa7.11□□□□□ -1.27
UBX4YMR067C VHR2P40041 505 aa7.11□□□□□ -1.27
UBX4YMR067C REF2P42073 533 aaPredicted RBP7.11□□□□□ -1.27
UBX4YMR067C VPS70P47161 811 aa7.11□□□□□ -1.27
UBX4YMR067C ARH1P48360 493 aa7.11□□□□□ -1.27
UBX4YMR067C SAS10Q12136 610 aaPredicted RBP7.1□□□□□ -1.27
UBX4YMR067C RAD54P32863 898 aa7.09□□□□□ -1.27
UBX4YMR067C CKB1P43639 278 aa7.09□□□□□ -1.27
UBX4YMR067C MPC54Q08550 464 aa7.09□□□□□ -1.27
UBX4YMR067C ELP4Q02884 456 aaKnown RBP7.08□□□□□ -1.28
UBX4YMR067C MAK21Q12176 1025 aaKnown RBP7.08□□□□□ -1.28
UBX4YMR067C PCS60P38137 543 aaKnown RBP RIP-Chip data7.06□□□□□ -1.28not detected
UBX4YMR067C RPP1BP10622 106 aaKnown RBP7.05□□□□□ -1.28
UBX4YMR067C KIC1P38692 1080 aa7.05□□□□□ -1.28
UBX4YMR067C HAP5Q02516 242 aa7.05□□□□□ -1.28
UBX4YMR067C YDR090CQ03193 310 aa7.05□□□□□ -1.28
UBX4YMR067C DPL1Q05567 589 aa7.05□□□□□ -1.28
UBX4YMR067C BNI4P53858 892 aa7.03□□□□□ -1.28
UBX4YMR067C YDR344CQ05510 147 aa7.03□□□□□ -1.28
UBX4YMR067C SPT23P35210 1082 aa7.02□□□□□ -1.29
UBX4YMR067C COX6P00427 148 aa7.01□□□□□ -1.29
UBX4YMR067C BCK2P33306 851 aa7.01□□□□□ -1.29
UBX4YMR067C NMA111P53920 997 aa7□□□□□ -1.29
UBX4YMR067C ISU2Q12056 156 aa6.99□□□□□ -1.29
UBX4YMR067C CDC73Q06697 393 aa6.97□□□□□ -1.29
UBX4YMR067C PBS2P08018 668 aa6.96□□□□□ -1.3
UBX4YMR067C PTC2P39966 464 aaKnown RBP6.95□□□□□ -1.3
UBX4YMR067C YML082WQ04533 649 aaKnown RBP6.95□□□□□ -1.3
UBX4YMR067C CSC1Q06538 782 aa6.94□□□□□ -1.3
UBX4YMR067C GAP1P19145 602 aaPredicted RBP6.93□□□□□ -1.3
UBX4YMR067C VRP1P37370 817 aa6.93□□□□□ -1.3
UBX4YMR067C DSF2P38213 736 aa6.93□□□□□ -1.3
UBX4YMR067C TFB4Q12004 338 aa6.93□□□□□ -1.3
UBX4YMR067C ORC6P38826 435 aa6.92□□□□□ -1.3
UBX4YMR067C XDJ1P39102 459 aa6.91□□□□□ -1.3
UBX4YMR067C PEX21P50091 288 aa6.89□□□□□ -1.31
UBX4YMR067C MAM3Q12296 706 aa6.89□□□□□ -1.31
UBX4YMR067C RAM1P22007 431 aa6.86□□□□□ -1.31
UBX4YMR067C SPB4P25808 606 aaPredicted RBP6.85□□□□□ -1.31
UBX4YMR067C PSE1P32337 1089 aaKnown RBP6.84□□□□□ -1.31
UBX4YMR067C MVP1P40959 511 aaKnown RBP6.84□□□□□ -1.31
UBX4YMR067C IES2P40154 320 aa6.83□□□□□ -1.32
UBX4YMR067C TUM1Q08686 304 aaKnown RBP6.82□□□□□ -1.32
UBX4YMR067C YRR1Q12172 810 aa6.82□□□□□ -1.32
UBX4YMR067C YPR015CQ12531 247 aa6.82□□□□□ -1.32
UBX4YMR067C PDR1P12383 1068 aa6.81□□□□□ -1.32
UBX4YMR067C RGR1P19263 1082 aa6.81□□□□□ -1.32
UBX4YMR067C CLB5P30283 435 aa6.79□□□□□ -1.32
UBX4YMR067C NUP42P49686 430 aaKnown RBP6.79□□□□□ -1.32
UBX4YMR067C SAS4Q04003 481 aa6.79□□□□□ -1.32
UBX4YMR067C NUD1P32336 851 aa6.77□□□□□ -1.33
UBX4YMR067C YPR109WQ06104 294 aa6.76□□□□□ -1.33
UBX4YMR067C NPL4P33755 580 aa6.75□□□□□ -1.33
UBX4YMR067C GYP1Q08484 637 aa6.75□□□□□ -1.33
UBX4YMR067C STR2P47164 639 aa6.74□□□□□ -1.33
UBX4YMR067C DPS1P04802 557 aaKnown RBP6.72□□□□□ -1.33
UBX4YMR067C ISM1P48526 1002 aa6.72□□□□□ -1.33
UBX4YMR067C BUD20Q08004 166 aaPredicted RBP6.72□□□□□ -1.33
UBX4YMR067C PRT1P06103 763 aaKnown RBP6.71□□□□□ -1.34
UBX4YMR067C DIT2P21595 489 aa6.7□□□□□ -1.34
UBX4YMR067C MRF1P30775 413 aaPredicted RBP6.69□□□□□ -1.34
UBX4YMR067C TEA1P47988 759 aa6.69□□□□□ -1.34
UBX4YMR067C YNR021WP53723 404 aaKnown RBP6.69□□□□□ -1.34
UBX4YMR067C LEU3P08638 886 aa6.66□□□□□ -1.34
UBX4YMR067C RTF1P53064 558 aa6.66□□□□□ -1.34
UBX4YMR067C TY1A-DR4O74302 440 aa6.65□□□□□ -1.34
UBX4YMR067C TY1A-HP0C2I4 478 aaKnown RBP6.65□□□□□ -1.34
UBX4YMR067C TY1A-AP0CX57 440 aa6.65□□□□□ -1.34
UBX4YMR067C TY1A-PR1P0CX58 440 aa6.65□□□□□ -1.34
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms