RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeastyeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBX4YMR067C MTC1P47018 478 aaKnown RBP12.49□□□□□ -0.41
UBX4YMR067C DRS1P32892 752 aaKnown RBP11.92□□□□□ -0.5
UBX4YMR067C FAP1P53971 965 aa10.84□□□□□ -0.67
UBX4YMR067C PRI1P10363 409 aa10.34□□□□□ -0.75
UBX4YMR067C DIP2Q12220 943 aaPredicted RBP10.34□□□□□ -0.75
UBX4YMR067C ISW2Q08773 1120 aa10.3□□□□□ -0.76
UBX4YMR067C AAD16Q02895 342 aa10.24□□□□□ -0.77
UBX4YMR067C PRY3P47033 881 aa10.15□□□□□ -0.78
UBX4YMR067C RPG1P38249 964 aaKnown RBP10.11□□□□□ -0.79
UBX4YMR067C BFR2Q06631 534 aaKnown RBP10.07□□□□□ -0.8
UBX4YMR067C AVT3P36062 692 aa10.06□□□□□ -0.8
UBX4YMR067C RSE1Q04693 1361 aaKnown RBP9.94□□□□□ -0.82
UBX4YMR067C TSR3Q12094 313 aaKnown RBP9.73□□□□□ -0.85
UBX4YMR067C HAA1Q12753 694 aaKnown RBP9.62□□□□□ -0.87
UBX4YMR067C RPL17AP05740 184 aaKnown RBP9.57□□□□□ -0.88
UBX4YMR067C YCK3P39962 524 aa9.57□□□□□ -0.88
UBX4YMR067C RPL17BP46990 184 aaKnown RBP9.57□□□□□ -0.88
UBX4YMR067C REB1P21538 810 aa9.53□□□□□ -0.88
UBX4YMR067C MRPL32P25348 183 aa9.41□□□□□ -0.9
UBX4YMR067C SPT21P35209 758 aa9.21□□□□□ -0.94
UBX4YMR067C TFA1P36100 482 aa9.11□□□□□ -0.95
UBX4YMR067C YKR023WP36119 530 aaKnown RBP9.01□□□□□ -0.97
UBX4YMR067C YGL015CP33199 130 aa8.96□□□□□ -0.98
UBX4YMR067C RIM101P33400 625 aa8.96□□□□□ -0.98
UBX4YMR067C CDC27P38042 758 aa8.95□□□□□ -0.98
UBX4YMR067C TFC8Q12308 588 aa8.85□□□□□ -0.99
UBX4YMR067C HOP09932 586 aa8.78□□□□□ -1
UBX4YMR067C UBP10P53874 792 aaPredicted RBP8.77□□□□□ -1.01
UBX4YMR067C DCD1P06773 312 aa8.71□□□□□ -1.02
UBX4YMR067C MAP2P38174 421 aaKnown RBP8.64□□□□□ -1.03
UBX4YMR067C OXP1P28273 1286 aa8.62□□□□□ -1.03
UBX4YMR067C BCH2P36122 765 aa8.55□□□□□ -1.04
UBX4YMR067C YIL055CP40523 627 aaKnown RBP8.54□□□□□ -1.04
UBX4YMR067C SCY1P53009 804 aa8.53□□□□□ -1.04
UBX4YMR067C PTP3P40048 928 aa8.51□□□□□ -1.05
UBX4YMR067C SLX5P32828 619 aaKnown RBP8.45□□□□□ -1.06
UBX4YMR067C RSM7P47150 247 aa8.41□□□□□ -1.06
UBX4YMR067C TIF4632P39936 914 aaKnown RBP8.4□□□□□ -1.06
UBX4YMR067C YAH1Q12184 172 aaKnown RBP8.39□□□□□ -1.07
UBX4YMR067C EPS1P40557 701 aa8.38□□□□□ -1.07
UBX4YMR067C BDF1P35817 686 aa8.33□□□□□ -1.08
UBX4YMR067C TGL3P40308 642 aa8.33□□□□□ -1.08
UBX4YMR067C BBC1P47068 1157 aa8.33□□□□□ -1.08
UBX4YMR067C SSP1P38871 571 aa8.31□□□□□ -1.08
UBX4YMR067C AI2P03876 854 aa8.3□□□□□ -1.08
UBX4YMR067C YLR271WQ06152 274 aa8.29□□□□□ -1.08
UBX4YMR067C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.27□□□□□ -1.09not detected
UBX4YMR067C PSD2P53037 1138 aaKnown RBP8.18□□□□□ -1.1
UBX4YMR067C NSR1P27476 414 aaKnown RBP RIP-Chip data8.13□□□□□ -1.11not detected
UBX4YMR067C MGA2P40578 1113 aa8.09□□□□□ -1.11
UBX4YMR067C BUD31P25337 157 aaPredicted RBP8.07□□□□□ -1.12
UBX4YMR067C MST1P07236 462 aa8.03□□□□□ -1.12
UBX4YMR067C YAP5P40574 245 aa8.02□□□□□ -1.13
UBX4YMR067C UBP9P39967 754 aa8.01□□□□□ -1.13
UBX4YMR067C YOR238WQ08634 303 aa8.01□□□□□ -1.13
UBX4YMR067C MRM1P25270 412 aa8□□□□□ -1.13
UBX4YMR067C CST9Q06032 482 aa8□□□□□ -1.13
UBX4YMR067C RTG3P38165 486 aa7.9□□□□□ -1.14
UBX4YMR067C YMR1P47147 688 aaKnown RBP RIP-Chip data7.84□□□□□ -1.15not detected
UBX4YMR067C VPS29P38759 282 aa7.83□□□□□ -1.16
UBX4YMR067C GTT3P39996 337 aa7.82□□□□□ -1.16
UBX4YMR067C YBL029C-AQ3E756 94 aa7.79□□□□□ -1.16
UBX4YMR067C RCR1P38212 213 aa7.77□□□□□ -1.17
UBX4YMR067C DBP1P24784 617 aaKnown RBP7.76□□□□□ -1.17
UBX4YMR067C VNX1P42839 908 aa7.75□□□□□ -1.17
UBX4YMR067C PIB1Q06651 286 aa7.74□□□□□ -1.17
UBX4YMR067C STS1P38637 319 aa7.73□□□□□ -1.17
UBX4YMR067C SIS1P25294 352 aaKnown RBP7.7□□□□□ -1.18
UBX4YMR067C WSC3Q12215 556 aa7.7□□□□□ -1.18
UBX4YMR067C MSB4Q12317 492 aa7.7□□□□□ -1.18
UBX4YMR067C YFR006WP43590 535 aa7.69□□□□□ -1.18
UBX4YMR067C VMA1P17255 1071 aaKnown RBP7.68□□□□□ -1.18
UBX4YMR067C SPP1Q03012 353 aa7.68□□□□□ -1.18
UBX4YMR067C MAK11P20484 414 aaKnown RBP7.66□□□□□ -1.18
UBX4YMR067C RAM2P29703 316 aa7.66□□□□□ -1.18
UBX4YMR067C TIF11P38912 153 aaKnown RBP7.66□□□□□ -1.18
UBX4YMR067C SAM3Q08986 587 aa7.65□□□□□ -1.18
UBX4YMR067C EAP1P36041 632 aaKnown RBP7.63□□□□□ -1.19
UBX4YMR067C YOL036WQ08206 761 aa7.63□□□□□ -1.19
UBX4YMR067C ABP1P15891 592 aaKnown RBP7.6□□□□□ -1.19
UBX4YMR067C SET4P42948 560 aa7.58□□□□□ -1.2
UBX4YMR067C ULI1P43604 169 aa7.58□□□□□ -1.2
UBX4YMR067C IOC2Q12072 812 aa7.54□□□□□ -1.2
UBX4YMR067C GYP5Q12344 894 aa7.53□□□□□ -1.2
UBX4YMR067C COQ8P27697 501 aa7.52□□□□□ -1.21
UBX4YMR067C MIF2P35201 549 aa7.52□□□□□ -1.21
UBX4YMR067C FKH1P40466 484 aa7.52□□□□□ -1.21
UBX4YMR067C LDB19Q12502 818 aa7.52□□□□□ -1.21
UBX4YMR067C NOP53Q12080 455 aaKnown RBP7.51□□□□□ -1.21
UBX4YMR067C TRP5P00931 707 aaKnown RBP7.5□□□□□ -1.21
UBX4YMR067C EDS1P38073 919 aa7.49□□□□□ -1.21
UBX4YMR067C HTA1P04911 132 aaKnown RBP7.48□□□□□ -1.21
UBX4YMR067C HTA2P04912 132 aa7.48□□□□□ -1.21
UBX4YMR067C PTC3P34221 468 aaKnown RBP7.48□□□□□ -1.21
UBX4YMR067C GRE2Q12068 342 aaKnown RBP7.48□□□□□ -1.21
UBX4YMR067C YNL035CP53962 389 aaKnown RBP7.46□□□□□ -1.22
UBX4YMR067C AIR2Q12476 344 aaKnown RBP7.46□□□□□ -1.22
UBX4YMR067C JIP4Q03361 876 aa7.45□□□□□ -1.22
UBX4YMR067C GUT1P32190 709 aa7.44□□□□□ -1.22
UBX4YMR067C SEC61P32915 480 aa7.44□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms