RNA–Protein interactions for RNA: YLR430W

SEN1, Transcript of Presumed helicase and subunit of the Nrd1 complex (Nrd1p-Nab3p-Sen1p), yeast

Gene SEN1, Length 6,696 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEN1	YLR430W	NNF2	P53253	936 aa		5.08	□□□□□ -1.6
SEN1	YLR430W	RPN1	P38764	993 aa	Known RBP	5.07	□□□□□ -1.6
SEN1	YLR430W	CHZ1	P40019	153 aa	Predicted RBP	5.07	□□□□□ -1.6
SEN1	YLR430W	PAN1	P32521	1480 aa		5.07	□□□□□ -1.6
SEN1	YLR430W	YPP1	P46951	817 aa		5.07	□□□□□ -1.6
SEN1	YLR430W	VPS4	P52917	437 aa		5.07	□□□□□ -1.6
SEN1	YLR430W	LTV1	P34078	463 aa		5.06	□□□□□ -1.6
SEN1	YLR430W	PSD2	P53037	1138 aa	Known RBP	5.06	□□□□□ -1.6
SEN1	YLR430W	NST1	P53935	1240 aa		5.06	□□□□□ -1.6
SEN1	YLR430W	MHP1	P43638	1398 aa		5.06	□□□□□ -1.6
SEN1	YLR430W	RAD26	P40352	1085 aa		5.06	□□□□□ -1.6
SEN1	YLR430W	ARL1	P38116	183 aa	Known RBP	5.05	□□□□□ -1.6
SEN1	YLR430W	ESC2	Q06340	456 aa		5.05	□□□□□ -1.6
SEN1	YLR430W	TAN1	P53072	289 aa	Predicted RBP	5.05	□□□□□ -1.6
SEN1	YLR430W	PCT1	P13259	424 aa		5.05	□□□□□ -1.6
SEN1	YLR430W	MSP1	P28737	362 aa		5.05	□□□□□ -1.6
SEN1	YLR430W	TCD1	P38756	429 aa		5.05	□□□□□ -1.6
SEN1	YLR430W	TPM2	P40414	161 aa		5.05	□□□□□ -1.6
SEN1	YLR430W	YPK9	Q12697	1472 aa		5.04	□□□□□ -1.6
SEN1	YLR430W	PEP1	P32319	1579 aa		5.03	□□□□□ -1.6
SEN1	YLR430W	BYE1	P36106	594 aa		5.03	□□□□□ -1.6
SEN1	YLR430W	TAF2	P23255	1407 aa		5.02	□□□□□ -1.61
SEN1	YLR430W	RPS0A	P32905	252 aa	Known RBP	5.02	□□□□□ -1.61
SEN1	YLR430W	DJP1	P40564	432 aa		5.02	□□□□□ -1.61
SEN1	YLR430W	VPS60	Q03390	229 aa		5.02	□□□□□ -1.61
SEN1	YLR430W	DOS2	P54858	310 aa		5.02	□□□□□ -1.61
SEN1	YLR430W	CDC45	Q08032	650 aa		5.02	□□□□□ -1.61
SEN1	YLR430W	RPP0	P05317	312 aa	Known RBP	5.02	□□□□□ -1.61
SEN1	YLR430W	VPS27	P40343	622 aa	Known RBP	5.01	□□□□□ -1.61
SEN1	YLR430W	SRP54	P20424	541 aa	Known RBP	5.01	□□□□□ -1.61
SEN1	YLR430W	RLP24	Q07915	199 aa	Known RBP	5.01	□□□□□ -1.61
SEN1	YLR430W	NOP14	Q99207	810 aa	Known RBP	5.01	□□□□□ -1.61
SEN1	YLR430W	LSP1	Q12230	341 aa	Known RBP	5.01	□□□□□ -1.61
SEN1	YLR430W	MYO4	P32492	1471 aa		5.01	□□□□□ -1.61
SEN1	YLR430W	PET111	P08468	800 aa		5.01	□□□□□ -1.61
SEN1	YLR430W	SPT6	P23615	1451 aa	Known RBP	5.01	□□□□□ -1.61
SEN1	YLR430W	DEP1	P31385	405 aa		5	□□□□□ -1.61
SEN1	YLR430W	SIC1	P38634	284 aa		5	□□□□□ -1.61
SEN1	YLR430W	MSH3	P25336	1018 aa		5	□□□□□ -1.61
SEN1	YLR430W	RAD2	P07276	1031 aa		4.99	□□□□□ -1.61
SEN1	YLR430W	CLB5	P30283	435 aa		4.99	□□□□□ -1.61
SEN1	YLR430W	SWE1	P32944	819 aa		4.99	□□□□□ -1.61
SEN1	YLR430W	RNT1	Q02555	471 aa		4.99	□□□□□ -1.61
SEN1	YLR430W	COG8	Q04632	607 aa		4.99	□□□□□ -1.61
SEN1	YLR430W	ETT1	Q08421	412 aa	Known RBP	4.99	□□□□□ -1.61
SEN1	YLR430W	MON2	P48563	1636 aa	Predicted RBP	4.99	□□□□□ -1.61
SEN1	YLR430W	CLB1	P24868	471 aa		4.99	□□□□□ -1.61
SEN1	YLR430W	CIN4	P39110	191 aa		4.99	□□□□□ -1.61
SEN1	YLR430W	RPN7	Q06103	429 aa	Known RBP	4.99	□□□□□ -1.61
SEN1	YLR430W	SWI3	P32591	825 aa		4.98	□□□□□ -1.61
SEN1	YLR430W	NOP8	Q08287	484 aa	Predicted RBP	4.98	□□□□□ -1.61
SEN1	YLR430W	RAD9	P14737	1309 aa		4.98	□□□□□ -1.61
SEN1	YLR430W	STU1	P38198	1513 aa		4.98	□□□□□ -1.61
SEN1	YLR430W	LCD1	Q04377	747 aa		4.98	□□□□□ -1.61
SEN1	YLR430W	YSH1	Q06224	779 aa	Predicted RBP	4.98	□□□□□ -1.61
SEN1	YLR430W	ECM1	P39715	212 aa		4.97	□□□□□ -1.61
SEN1	YLR430W	YVC1	Q12324	675 aa		4.97	□□□□□ -1.61
SEN1	YLR430W	NUP170	P38181	1502 aa		4.97	□□□□□ -1.61
SEN1	YLR430W	MYO2	P19524	1574 aa	Known RBP	4.97	□□□□□ -1.61
SEN1	YLR430W	MED8	P38304	223 aa		4.97	□□□□□ -1.61
SEN1	YLR430W	NOP7	P53261	605 aa	Known RBP	4.96	□□□□□ -1.61
SEN1	YLR430W	TRM3	Q07527	1436 aa		4.96	□□□□□ -1.62
SEN1	YLR430W	YMR124W	P39523	943 aa	Known RBP	4.96	□□□□□ -1.62
SEN1	YLR430W	SWR1	Q05471	1514 aa		4.96	□□□□□ -1.62
SEN1	YLR430W	YNL050C	P53952	270 aa		4.95	□□□□□ -1.62
SEN1	YLR430W	TEA1	P47988	759 aa		4.95	□□□□□ -1.62
SEN1	YLR430W	VPS30	Q02948	557 aa		4.95	□□□□□ -1.62
SEN1	YLR430W	MDM38	Q08179	573 aa		4.95	□□□□□ -1.62
SEN1	YLR430W	THO2	P53552	1597 aa	Known RBP	4.95	□□□□□ -1.62
SEN1	YLR430W	KNS1	P32350	737 aa	Predicted RBP	4.95	□□□□□ -1.62
SEN1	YLR430W	GRX3	Q03835	250 aa		4.95	□□□□□ -1.62
SEN1	YLR430W	ECM16	Q04217	1267 aa	Known RBP	4.95	□□□□□ -1.62
SEN1	YLR430W	GEA1	P47102	1408 aa	Predicted RBP	4.95	□□□□□ -1.62
SEN1	YLR430W	HOS3	Q02959	697 aa	Known RBP	4.94	□□□□□ -1.62
SEN1	YLR430W	PDS5	Q04264	1277 aa		4.94	□□□□□ -1.62
SEN1	YLR430W	PDR10	P51533	1564 aa		4.93	□□□□□ -1.62
SEN1	YLR430W	TSC11	P40061	1430 aa		4.93	□□□□□ -1.62
SEN1	YLR430W	KIP3	P53086	805 aa	Known RBP	4.93	□□□□□ -1.62
SEN1	YLR430W	IOC4	Q04213	475 aa		4.93	□□□□□ -1.62
SEN1	YLR430W	POL1	P13382	1468 aa		4.93	□□□□□ -1.62
SEN1	YLR430W	BMS1	Q08965	1183 aa	Known RBP	4.93	□□□□□ -1.62
SEN1	YLR430W	TOP1	P04786	769 aa		4.93	□□□□□ -1.62
SEN1	YLR430W	VPS72	Q03388	795 aa		4.93	□□□□□ -1.62
SEN1	YLR430W	RRP15	Q06511	250 aa	Predicted RBP	4.92	□□□□□ -1.62
SEN1	YLR430W	IRC20	Q06554	1556 aa		4.92	□□□□□ -1.62
SEN1	YLR430W	SAP190	P36123	1033 aa		4.92	□□□□□ -1.62
SEN1	YLR430W	STU2	P46675	888 aa		4.92	□□□□□ -1.62
SEN1	YLR430W	ZUO1	P32527	433 aa	Known RBP	4.92	□□□□□ -1.62
SEN1	YLR430W	APL5	Q08951	932 aa	Known RBP	4.92	□□□□□ -1.62
SEN1	YLR430W	RVB2	Q12464	471 aa	Known RBP	4.92	□□□□□ -1.62
SEN1	YLR430W	SEC39	Q12745	709 aa		4.92	□□□□□ -1.62
SEN1	YLR430W	RAD51	P25454	400 aa		4.91	□□□□□ -1.62
SEN1	YLR430W	ERV41	Q04651	352 aa		4.91	□□□□□ -1.62
SEN1	YLR430W	SCC2	Q04002	1493 aa		4.91	□□□□□ -1.62
SEN1	YLR430W	PAP2	P53632	584 aa	Known RBP	4.91	□□□□□ -1.62
SEN1	YLR430W	SCT1	P32784	759 aa		4.91	□□□□□ -1.62
SEN1	YLR430W	MRS2	Q01926	470 aa		4.91	□□□□□ -1.62
SEN1	YLR430W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.91	□□□□□ -1.62	RIP-Chip
SEN1	YLR430W	RKM3	P38222	552 aa		4.9	□□□□□ -1.62
SEN1	YLR430W	RIO2	P40160	425 aa	Known RBP	4.9	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms