RNA–Protein interactions for RNA: YLR336C

SGD1, Transcript of Essential nuclear protein, yeast

Gene SGD1, Length 2,700 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SGD1	YLR336C	DSF2	P38213	736 aa		4.27	□□□□□ -1.73
SGD1	YLR336C	GRE2	Q12068	342 aa	Known RBP	4.26	□□□□□ -1.73
SGD1	YLR336C	REF2	P42073	533 aa	Predicted RBP	4.26	□□□□□ -1.73
SGD1	YLR336C	ATH1	P48016	1211 aa		4.25	□□□□□ -1.73
SGD1	YLR336C	GUT1	P32190	709 aa		4.25	□□□□□ -1.73
SGD1	YLR336C	GYP5	Q12344	894 aa		4.25	□□□□□ -1.73
SGD1	YLR336C	EAP1	P36041	632 aa	Known RBP	4.24	□□□□□ -1.73
SGD1	YLR336C	SOL3	P38858	249 aa		4.24	□□□□□ -1.73
SGD1	YLR336C	YOL036W	Q08206	761 aa		4.24	□□□□□ -1.73
SGD1	YLR336C	SET4	P42948	560 aa		4.23	□□□□□ -1.73
SGD1	YLR336C	MSB4	Q12317	492 aa		4.23	□□□□□ -1.73
SGD1	YLR336C	UBP14	P38237	781 aa	Known RBP	4.23	□□□□□ -1.73
SGD1	YLR336C	VHR2	P40041	505 aa		4.23	□□□□□ -1.73
SGD1	YLR336C	RTG1	P32607	177 aa		4.22	□□□□□ -1.73
SGD1	YLR336C	DCW1	P36091	449 aa		4.22	□□□□□ -1.73
SGD1	YLR336C	RPN1	P38764	993 aa	Known RBP	4.22	□□□□□ -1.73
SGD1	YLR336C	YGR273C	P53329	174 aa		4.22	□□□□□ -1.73
SGD1	YLR336C	YDR090C	Q03193	310 aa		4.22	□□□□□ -1.73
SGD1	YLR336C	NCR1	Q12200	1170 aa		4.21	□□□□□ -1.74
SGD1	YLR336C	COX6	P00427	148 aa		4.21	□□□□□ -1.74
SGD1	YLR336C	TRP5	P00931	707 aa	Known RBP	4.21	□□□□□ -1.74
SGD1	YLR336C	NST1	P53935	1240 aa		4.21	□□□□□ -1.74
SGD1	YLR336C	YLR326W	Q06170	240 aa	Known RBP	4.21	□□□□□ -1.74
SGD1	YLR336C	MAM3	Q12296	706 aa		4.21	□□□□□ -1.74
SGD1	YLR336C	IES2	P40154	320 aa		4.2	□□□□□ -1.74
SGD1	YLR336C	NUP42	P49686	430 aa	Known RBP	4.2	□□□□□ -1.74
SGD1	YLR336C	DIT2	P21595	489 aa		4.19	□□□□□ -1.74
SGD1	YLR336C	MAK21	Q12176	1025 aa	Known RBP	4.18	□□□□□ -1.74
SGD1	YLR336C	KEX1	P09620	729 aa		4.18	□□□□□ -1.74
SGD1	YLR336C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	RIP-Chip
SGD1	YLR336C	HTA1	P04911	132 aa	Known RBP	4.17	□□□□□ -1.74
SGD1	YLR336C	HTA2	P04912	132 aa		4.17	□□□□□ -1.74
SGD1	YLR336C	YNL035C	P53962	389 aa	Known RBP	4.17	□□□□□ -1.74
SGD1	YLR336C	ABP1	P15891	592 aa	Known RBP	4.16	□□□□□ -1.74
SGD1	YLR336C	ILV3	P39522	585 aa	Known RBP	4.16	□□□□□ -1.74
SGD1	YLR336C	YNR021W	P53723	404 aa	Known RBP	4.16	□□□□□ -1.74
SGD1	YLR336C	GLC3	P32775	704 aa		4.16	□□□□□ -1.74
SGD1	YLR336C	TFG1	P41895	735 aa	Predicted RBP	4.16	□□□□□ -1.74
SGD1	YLR336C	SEC61	P32915	480 aa		4.15	□□□□□ -1.75
SGD1	YLR336C	YEL023C	P39992	682 aa		4.15	□□□□□ -1.75
SGD1	YLR336C	RAD54	P32863	898 aa		4.14	□□□□□ -1.75
SGD1	YLR336C	MPH3	P0CE00	602 aa		4.14	□□□□□ -1.75
SGD1	YLR336C	TAF7	Q05021	590 aa		4.14	□□□□□ -1.75
SGD1	YLR336C	AI4	P03878	556 aa		4.13	□□□□□ -1.75
SGD1	YLR336C	KIN1	P13185	1064 aa		4.12	□□□□□ -1.75
SGD1	YLR336C	KIC1	P38692	1080 aa		4.12	□□□□□ -1.75
SGD1	YLR336C	PTC4	P38089	393 aa		4.12	□□□□□ -1.75
SGD1	YLR336C	SAP30	P38429	201 aa		4.12	□□□□□ -1.75
SGD1	YLR336C	DAN4	P47179	1161 aa		4.12	□□□□□ -1.75
SGD1	YLR336C	DMA2	P53924	522 aa		4.11	□□□□□ -1.75
SGD1	YLR336C	AIM7	Q12156	149 aa		4.11	□□□□□ -1.75
SGD1	YLR336C	SLI15	P38283	698 aa		4.1	□□□□□ -1.75
SGD1	YLR336C	ORC6	P38826	435 aa		4.1	□□□□□ -1.75
SGD1	YLR336C	ATF2	P53296	535 aa		4.08	□□□□□ -1.76
SGD1	YLR336C	PSE1	P32337	1089 aa	Known RBP	4.08	□□□□□ -1.76
SGD1	YLR336C	JIP4	Q03361	876 aa		4.08	□□□□□ -1.76
SGD1	YLR336C	BCK2	P33306	851 aa		4.07	□□□□□ -1.76
SGD1	YLR336C	MID1	P41821	548 aa		4.07	□□□□□ -1.76
SGD1	YLR336C	CDC73	Q06697	393 aa		4.07	□□□□□ -1.76
SGD1	YLR336C	YDL129W	Q07555	291 aa		4.07	□□□□□ -1.76
SGD1	YLR336C	GAP1	P19145	602 aa	Predicted RBP	4.06	□□□□□ -1.76
SGD1	YLR336C	RGR1	P19263	1082 aa		4.06	□□□□□ -1.76
SGD1	YLR336C	GUA1	P38625	525 aa	Known RBP	4.06	□□□□□ -1.76
SGD1	YLR336C	CHL1	P22516	861 aa	Predicted RBP	4.05	□□□□□ -1.76
SGD1	YLR336C	MVP1	P40959	511 aa	Known RBP	4.05	□□□□□ -1.76
SGD1	YLR336C	PML39	Q03760	334 aa		4.05	□□□□□ -1.76
SGD1	YLR336C	PRE3	P38624	215 aa		4.03	□□□□□ -1.76
SGD1	YLR336C	TEA1	P47988	759 aa		4.02	□□□□□ -1.77
SGD1	YLR336C	MPC54	Q08550	464 aa		4.02	□□□□□ -1.77
SGD1	YLR336C	CSC1	Q06538	782 aa		4.01	□□□□□ -1.77
SGD1	YLR336C	DPL1	Q05567	589 aa		4.01	□□□□□ -1.77
SGD1	YLR336C	YPR109W	Q06104	294 aa		4.01	□□□□□ -1.77
SGD1	YLR336C	NIS1	P53939	407 aa		4	□□□□□ -1.77
SGD1	YLR336C	PEX29	Q03370	554 aa		4	□□□□□ -1.77
SGD1	YLR336C	KTR1	P27810	393 aa	Known RBP	4	□□□□□ -1.77
SGD1	YLR336C	TUM1	Q08686	304 aa	Known RBP	4	□□□□□ -1.77
SGD1	YLR336C	RPP1B	P10622	106 aa	Known RBP	3.99	□□□□□ -1.77
SGD1	YLR336C	YDR344C	Q05510	147 aa		3.99	□□□□□ -1.77
SGD1	YLR336C	CSN12	P47130	423 aa		3.99	□□□□□ -1.77
SGD1	YLR336C	TYW1	Q08960	810 aa	Known RBP	3.99	□□□□□ -1.77
SGD1	YLR336C	TFB4	Q12004	338 aa		3.99	□□□□□ -1.77
SGD1	YLR336C	NMA111	P53920	997 aa		3.98	□□□□□ -1.77
SGD1	YLR336C	CLB5	P30283	435 aa		3.98	□□□□□ -1.77
SGD1	YLR336C	VRP1	P37370	817 aa		3.98	□□□□□ -1.77
SGD1	YLR336C	HPC2	Q01448	625 aa		3.98	□□□□□ -1.77
SGD1	YLR336C	TFB3	Q03290	321 aa		3.98	□□□□□ -1.77
SGD1	YLR336C	PEX21	P50091	288 aa		3.97	□□□□□ -1.77
SGD1	YLR336C	FPK1	P53739	893 aa		3.97	□□□□□ -1.77
SGD1	YLR336C	ELP4	Q02884	456 aa	Known RBP	3.97	□□□□□ -1.77
SGD1	YLR336C	YRR1	Q12172	810 aa		3.97	□□□□□ -1.77
SGD1	YLR336C	PKC1	P24583	1151 aa		3.96	□□□□□ -1.78
SGD1	YLR336C	SCJ1	P25303	377 aa		3.96	□□□□□ -1.78
SGD1	YLR336C	ISU2	Q12056	156 aa		3.96	□□□□□ -1.78
SGD1	YLR336C	SSA2	P10592	639 aa	Known RBP	3.94	□□□□□ -1.78
SGD1	YLR336C	PDR1	P12383	1068 aa		3.94	□□□□□ -1.78
SGD1	YLR336C	SIT4	P20604	311 aa		3.94	□□□□□ -1.78
SGD1	YLR336C	HST2	P53686	357 aa		3.94	□□□□□ -1.78
SGD1	YLR336C	XDJ1	P39102	459 aa		3.94	□□□□□ -1.78
SGD1	YLR336C	YMR196W	Q04336	1088 aa		3.94	□□□□□ -1.78
SGD1	YLR336C	ESS1	P22696	170 aa		3.93	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 84.1 ms