RNA–Protein interactions for RNA: YLR336C

SGD1, Transcript of Essential nuclear protein, yeastyeast

Gene SGD1, Length 2,700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SGD1YLR336C DRS1P32892 752 aaKnown RBP7.03□□□□□ -1.28
SGD1YLR336C MTC1P47018 478 aaKnown RBP6.94□□□□□ -1.3
SGD1YLR336C FAP1P53971 965 aa6.7□□□□□ -1.34
SGD1YLR336C PRY3P47033 881 aa6.3□□□□□ -1.4
SGD1YLR336C BFR2Q06631 534 aaKnown RBP6.09□□□□□ -1.43
SGD1YLR336C AAD16Q02895 342 aa6.06□□□□□ -1.44
SGD1YLR336C PRI1P10363 409 aa6.03□□□□□ -1.44
SGD1YLR336C DIP2Q12220 943 aaPredicted RBP5.97□□□□□ -1.45
SGD1YLR336C AVT3P36062 692 aa5.92□□□□□ -1.46
SGD1YLR336C HAA1Q12753 694 aaKnown RBP5.86□□□□□ -1.47
SGD1YLR336C YCK3P39962 524 aa5.85□□□□□ -1.47
SGD1YLR336C ISW2Q08773 1120 aa5.84□□□□□ -1.47
SGD1YLR336C RPG1P38249 964 aaKnown RBP5.79□□□□□ -1.48
SGD1YLR336C TFA1P36100 482 aa5.77□□□□□ -1.49
SGD1YLR336C TSR3Q12094 313 aaKnown RBP5.72□□□□□ -1.49
SGD1YLR336C RSE1Q04693 1361 aaKnown RBP5.59□□□□□ -1.51
SGD1YLR336C MRPL32P25348 183 aa5.5□□□□□ -1.53
SGD1YLR336C RPL17AP05740 184 aaKnown RBP5.4□□□□□ -1.55
SGD1YLR336C RPL17BP46990 184 aaKnown RBP5.4□□□□□ -1.55
SGD1YLR336C YGL015CP33199 130 aa5.36□□□□□ -1.55
SGD1YLR336C REB1P21538 810 aa5.31□□□□□ -1.56
SGD1YLR336C SPT21P35209 758 aa5.23□□□□□ -1.57
SGD1YLR336C RIM101P33400 625 aa5.16□□□□□ -1.58
SGD1YLR336C CDC27P38042 758 aa5.13□□□□□ -1.59
SGD1YLR336C YKR023WP36119 530 aaKnown RBP5.06□□□□□ -1.6
SGD1YLR336C BUD31P25337 157 aaPredicted RBP5.03□□□□□ -1.6
SGD1YLR336C OXP1P28273 1286 aa5.02□□□□□ -1.61
SGD1YLR336C MAP2P38174 421 aaKnown RBP5.02□□□□□ -1.61
SGD1YLR336C PTP3P40048 928 aa5.02□□□□□ -1.61
SGD1YLR336C UBP10P53874 792 aaPredicted RBP5.01□□□□□ -1.61
SGD1YLR336C HOP09932 586 aa4.96□□□□□ -1.62
SGD1YLR336C DCD1P06773 312 aa4.95□□□□□ -1.62
SGD1YLR336C TFC8Q12308 588 aa4.94□□□□□ -1.62
SGD1YLR336C YAH1Q12184 172 aaKnown RBP4.94□□□□□ -1.62
SGD1YLR336C SSP1P38871 571 aa4.93□□□□□ -1.62
SGD1YLR336C YIL055CP40523 627 aaKnown RBP4.9□□□□□ -1.63
SGD1YLR336C YLR271WQ06152 274 aa4.88□□□□□ -1.63
SGD1YLR336C SCY1P53009 804 aa4.87□□□□□ -1.63
SGD1YLR336C TIF4632P39936 914 aaKnown RBP4.85□□□□□ -1.63
SGD1YLR336C RQC2Q12532 1038 aaKnown RBP4.85□□□□□ -1.63
SGD1YLR336C RSM7P47150 247 aa4.83□□□□□ -1.64
SGD1YLR336C SIS1P25294 352 aaKnown RBP4.82□□□□□ -1.64
SGD1YLR336C SLX5P32828 619 aaKnown RBP4.82□□□□□ -1.64
SGD1YLR336C ARP8Q12386 881 aaKnown RBP RIP-Chip data4.82□□□□□ -1.64not detected
SGD1YLR336C BCH2P36122 765 aa4.81□□□□□ -1.64
SGD1YLR336C TGL3P40308 642 aa4.81□□□□□ -1.64
SGD1YLR336C UBP9P39967 754 aa4.8□□□□□ -1.64
SGD1YLR336C DMA1P38823 416 aa4.8□□□□□ -1.64
SGD1YLR336C AI2P03876 854 aa4.76□□□□□ -1.65
SGD1YLR336C MGA2P40578 1113 aa4.75□□□□□ -1.65
SGD1YLR336C CST9Q06032 482 aa4.75□□□□□ -1.65
SGD1YLR336C PSD2P53037 1138 aaKnown RBP4.74□□□□□ -1.65
SGD1YLR336C EPS1P40557 701 aa4.71□□□□□ -1.66
SGD1YLR336C BBC1P47068 1157 aa4.69□□□□□ -1.66
SGD1YLR336C BDF1P35817 686 aa4.69□□□□□ -1.66
SGD1YLR336C MRM1P25270 412 aa4.62□□□□□ -1.67
SGD1YLR336C RCR1P38212 213 aa4.6□□□□□ -1.67
SGD1YLR336C RAM2P29703 316 aa4.57□□□□□ -1.68
SGD1YLR336C YBL029C-AQ3E756 94 aa4.57□□□□□ -1.68
SGD1YLR336C YOR238WQ08634 303 aa4.55□□□□□ -1.68
SGD1YLR336C RTG3P38165 486 aa4.54□□□□□ -1.68
SGD1YLR336C MST1P07236 462 aa4.53□□□□□ -1.68
SGD1YLR336C VPS29P38759 282 aa4.52□□□□□ -1.69
SGD1YLR336C SAS10Q12136 610 aaPredicted RBP4.51□□□□□ -1.69
SGD1YLR336C VNX1P42839 908 aa4.48□□□□□ -1.69
SGD1YLR336C WSC3Q12215 556 aa4.48□□□□□ -1.69
SGD1YLR336C SPP1Q03012 353 aa4.47□□□□□ -1.69
SGD1YLR336C MAK11P20484 414 aaKnown RBP4.46□□□□□ -1.69
SGD1YLR336C SET1P38827 1080 aaKnown RBP4.46□□□□□ -1.69
SGD1YLR336C YAP5P40574 245 aa4.46□□□□□ -1.69
SGD1YLR336C STS1P38637 319 aa4.46□□□□□ -1.7
SGD1YLR336C YMR1P47147 688 aaKnown RBP RIP-Chip data4.44□□□□□ -1.7not detected
SGD1YLR336C NSR1P27476 414 aaKnown RBP RIP-Chip data4.44□□□□□ -1.7 RIP-Chip
SGD1YLR336C YFR006WP43590 535 aa4.44□□□□□ -1.7
SGD1YLR336C DBP1P24784 617 aaKnown RBP4.43□□□□□ -1.7
SGD1YLR336C COQ8P27697 501 aa4.41□□□□□ -1.7
SGD1YLR336C YJL171CP46992 396 aa4.41□□□□□ -1.7
SGD1YLR336C PIB1Q06651 286 aa4.41□□□□□ -1.7
SGD1YLR336C GTT3P39996 337 aa4.41□□□□□ -1.7
SGD1YLR336C EDS1P38073 919 aa4.4□□□□□ -1.71
SGD1YLR336C YPR148CQ06523 435 aa4.39□□□□□ -1.71
SGD1YLR336C MIF2P35201 549 aa4.39□□□□□ -1.71
SGD1YLR336C TIF11P38912 153 aaKnown RBP4.38□□□□□ -1.71
SGD1YLR336C VPS70P47161 811 aa4.38□□□□□ -1.71
SGD1YLR336C AIR2Q12476 344 aaKnown RBP4.37□□□□□ -1.71
SGD1YLR336C LEU3P08638 886 aa4.35□□□□□ -1.71
SGD1YLR336C IFH1P39520 1085 aa4.35□□□□□ -1.71
SGD1YLR336C VMA1P17255 1071 aaKnown RBP4.34□□□□□ -1.71
SGD1YLR336C FKH1P40466 484 aa4.34□□□□□ -1.71
SGD1YLR336C PTC3P34221 468 aaKnown RBP4.34□□□□□ -1.72
SGD1YLR336C NOP53Q12080 455 aaKnown RBP4.33□□□□□ -1.72
SGD1YLR336C ULI1P43604 169 aa4.33□□□□□ -1.72
SGD1YLR336C LDB19Q12502 818 aa4.33□□□□□ -1.72
SGD1YLR336C LEO1P38439 464 aa4.32□□□□□ -1.72
SGD1YLR336C CKB1P43639 278 aa4.32□□□□□ -1.72
SGD1YLR336C SPB4P25808 606 aaPredicted RBP4.3□□□□□ -1.72
SGD1YLR336C BMT6Q12291 365 aa4.3□□□□□ -1.72
SGD1YLR336C SAM3Q08986 587 aa4.28□□□□□ -1.72
SGD1YLR336C IOC2Q12072 812 aa4.28□□□□□ -1.72
SGD1YLR336C PBS2P08018 668 aa4.27□□□□□ -1.73
Retrieved 100 of 5,963 RNA–protein pairs in 64.5 ms