RNA–Protein interactions for RNA: YLR132C

USB1, Transcript of Putative phosphodiesterase specific for U6 snRNA 3' end modification, yeastyeast

Gene USB1, Length 873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USB1YLR132C NCR1Q12200 1170 aa9.38□□□□□ -0.91
USB1YLR132C DAN4P47179 1161 aa9.37□□□□□ -0.91
USB1YLR132C JIP4Q03361 876 aa9.36□□□□□ -0.91
USB1YLR132C YEL023CP39992 682 aa9.35□□□□□ -0.91
USB1YLR132C ATH1P48016 1211 aa9.35□□□□□ -0.91
USB1YLR132C BMT6Q12291 365 aa9.35□□□□□ -0.91
USB1YLR132C GUT1P32190 709 aa9.33□□□□□ -0.92
USB1YLR132C PTC4P38089 393 aa9.32□□□□□ -0.92
USB1YLR132C RQC2Q12532 1038 aaKnown RBP9.29□□□□□ -0.92
USB1YLR132C NOP53Q12080 455 aaKnown RBP9.28□□□□□ -0.92
USB1YLR132C TFG1P41895 735 aaPredicted RBP9.27□□□□□ -0.93
USB1YLR132C NST1P53935 1240 aa9.25□□□□□ -0.93
USB1YLR132C SOL3P38858 249 aa9.24□□□□□ -0.93
USB1YLR132C SAP30P38429 201 aa9.22□□□□□ -0.93
USB1YLR132C YDL129WQ07555 291 aa9.22□□□□□ -0.93
USB1YLR132C SET1P38827 1080 aaKnown RBP9.21□□□□□ -0.94
USB1YLR132C PML39Q03760 334 aa9.16□□□□□ -0.94
USB1YLR132C AI4P03878 556 aa9.14□□□□□ -0.95
USB1YLR132C MPH3P0CE00 602 aa9.14□□□□□ -0.95
USB1YLR132C ILV3P39522 585 aaKnown RBP9.14□□□□□ -0.95
USB1YLR132C YGR273CP53329 174 aa9.14□□□□□ -0.95
USB1YLR132C MID1P41821 548 aa9.08□□□□□ -0.96
USB1YLR132C YDR344CQ05510 147 aa9.08□□□□□ -0.96
USB1YLR132C PRE3P38624 215 aa9.05□□□□□ -0.96
USB1YLR132C CHL1P22516 861 aaPredicted RBP9.03□□□□□ -0.96
USB1YLR132C KEX1P09620 729 aa9□□□□□ -0.97
USB1YLR132C IFH1P39520 1085 aa8.98□□□□□ -0.97
USB1YLR132C SLI15P38283 698 aa8.97□□□□□ -0.97
USB1YLR132C ARH1P48360 493 aa8.97□□□□□ -0.97
USB1YLR132C PEX29Q03370 554 aa8.97□□□□□ -0.97
USB1YLR132C YPR148CQ06523 435 aa8.97□□□□□ -0.97
USB1YLR132C UBP14P38237 781 aaKnown RBP8.96□□□□□ -0.98
USB1YLR132C ELP4Q02884 456 aaKnown RBP8.96□□□□□ -0.98
USB1YLR132C YLR326WQ06170 240 aaKnown RBP8.96□□□□□ -0.98
USB1YLR132C VHR2P40041 505 aa8.95□□□□□ -0.98
USB1YLR132C MPC54Q08550 464 aa8.94□□□□□ -0.98
USB1YLR132C BCK2P33306 851 aa8.9□□□□□ -0.98
USB1YLR132C HAP5Q02516 242 aa8.89□□□□□ -0.99
USB1YLR132C PCS60P38137 543 aaKnown RBP RIP-Chip data8.88□□□□□ -0.99not detected
USB1YLR132C DMA1P38823 416 aa8.88□□□□□ -0.99
USB1YLR132C VPS70P47161 811 aa8.88□□□□□ -0.99
USB1YLR132C DPL1Q05567 589 aa8.86□□□□□ -0.99
USB1YLR132C RAD54P32863 898 aa8.85□□□□□ -0.99
USB1YLR132C SPT23P35210 1082 aa8.85□□□□□ -0.99
USB1YLR132C YDR090CQ03193 310 aa8.85□□□□□ -0.99
USB1YLR132C REF2P42073 533 aaPredicted RBP8.84□□□□□ -0.99
USB1YLR132C NMA111P53920 997 aa8.84□□□□□ -0.99
USB1YLR132C CDC73Q06697 393 aa8.83□□□□□ -1
USB1YLR132C VRP1P37370 817 aa8.82□□□□□ -1
USB1YLR132C BNI4P53858 892 aa8.82□□□□□ -1
USB1YLR132C ISU2Q12056 156 aa8.77□□□□□ -1.01
USB1YLR132C KIC1P38692 1080 aa8.76□□□□□ -1.01
USB1YLR132C PTC2P39966 464 aaKnown RBP8.75□□□□□ -1.01
USB1YLR132C YML082WQ04533 649 aaKnown RBP8.75□□□□□ -1.01
USB1YLR132C XDJ1P39102 459 aa8.73□□□□□ -1.01
USB1YLR132C SAS10Q12136 610 aaPredicted RBP8.71□□□□□ -1.02
USB1YLR132C MAK21Q12176 1025 aaKnown RBP8.71□□□□□ -1.02
USB1YLR132C COX6P00427 148 aa8.7□□□□□ -1.02
USB1YLR132C RPP1BP10622 106 aaKnown RBP8.7□□□□□ -1.02
USB1YLR132C RAM1P22007 431 aa8.7□□□□□ -1.02
USB1YLR132C CKB1P43639 278 aa8.69□□□□□ -1.02
USB1YLR132C YPR015CQ12531 247 aa8.69□□□□□ -1.02
USB1YLR132C GAP1P19145 602 aaPredicted RBP8.68□□□□□ -1.02
USB1YLR132C PDR1P12383 1068 aa8.66□□□□□ -1.02
USB1YLR132C ORC6P38826 435 aa8.66□□□□□ -1.02
USB1YLR132C PBS2P08018 668 aa8.64□□□□□ -1.03
USB1YLR132C CSC1Q06538 782 aa8.62□□□□□ -1.03
USB1YLR132C PEX21P50091 288 aa8.61□□□□□ -1.03
USB1YLR132C TFB4Q12004 338 aa8.6□□□□□ -1.03
USB1YLR132C YRR1Q12172 810 aa8.6□□□□□ -1.03
USB1YLR132C MVP1P40959 511 aaKnown RBP8.56□□□□□ -1.04
USB1YLR132C TUM1Q08686 304 aaKnown RBP8.56□□□□□ -1.04
USB1YLR132C DPS1P04802 557 aaKnown RBP8.54□□□□□ -1.04
USB1YLR132C DSF2P38213 736 aa8.54□□□□□ -1.04
USB1YLR132C RGR1P19263 1082 aa8.52□□□□□ -1.05
USB1YLR132C MAM3Q12296 706 aa8.52□□□□□ -1.05
USB1YLR132C STR2P47164 639 aa8.51□□□□□ -1.05
USB1YLR132C GYP1Q08484 637 aa8.51□□□□□ -1.05
USB1YLR132C NUD1P32336 851 aa8.5□□□□□ -1.05
USB1YLR132C BUD20Q08004 166 aaPredicted RBP8.5□□□□□ -1.05
USB1YLR132C ISM1P48526 1002 aa8.49□□□□□ -1.05
USB1YLR132C YPR109WQ06104 294 aa8.49□□□□□ -1.05
USB1YLR132C IES2P40154 320 aa8.48□□□□□ -1.05
USB1YLR132C SPB4P25808 606 aaPredicted RBP8.47□□□□□ -1.05
USB1YLR132C PSE1P32337 1089 aaKnown RBP8.46□□□□□ -1.06
USB1YLR132C SAS4Q04003 481 aa8.45□□□□□ -1.06
USB1YLR132C PRT1P06103 763 aaKnown RBP8.44□□□□□ -1.06
USB1YLR132C SDH2P21801 266 aa8.44□□□□□ -1.06
USB1YLR132C NUP42P49686 430 aaKnown RBP8.44□□□□□ -1.06
USB1YLR132C NPL4P33755 580 aa8.42□□□□□ -1.06
USB1YLR132C RAS1P01119 309 aa8.41□□□□□ -1.06
USB1YLR132C TY1A-DR4O74302 440 aa8.4□□□□□ -1.06
USB1YLR132C TY1A-HP0C2I4 478 aaKnown RBP8.4□□□□□ -1.06
USB1YLR132C TY1A-AP0CX57 440 aa8.4□□□□□ -1.06
USB1YLR132C TY1A-PR1P0CX58 440 aa8.4□□□□□ -1.06
USB1YLR132C TY1A-ORP0CX59 440 aa8.4□□□□□ -1.06
USB1YLR132C TY1A-PR2P0CX60 440 aa8.4□□□□□ -1.06
USB1YLR132C TY1A-DR5P0CX65 440 aa8.4□□□□□ -1.06
USB1YLR132C TY1A-ER2P0CX66 440 aa8.4□□□□□ -1.06
USB1YLR132C TY1A-GR3P0CX67 440 aa8.4□□□□□ -1.06
Retrieved 100 of 5,963 RNA–protein pairs in 39.4 ms