RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W FKH1P40466 484 aa7.21□□□□□ -1.25
SSL1YLR005W MIF2P35201 549 aa7.2□□□□□ -1.26
SSL1YLR005W GYP5Q12344 894 aa7.2□□□□□ -1.26
SSL1YLR005W MAK11P20484 414 aaKnown RBP7.2□□□□□ -1.26
SSL1YLR005W XRN1P22147 1528 aaKnown RBP7.18□□□□□ -1.26
SSL1YLR005W PEP1P32319 1579 aa7.17□□□□□ -1.26
SSL1YLR005W DCW1P36091 449 aa7.17□□□□□ -1.26
SSL1YLR005W YJL171CP46992 396 aa7.17□□□□□ -1.26
SSL1YLR005W RTG1P32607 177 aa7.16□□□□□ -1.26
SSL1YLR005W EDS1P38073 919 aa7.15□□□□□ -1.26
SSL1YLR005W ATG2P53855 1592 aa7.14□□□□□ -1.27
SSL1YLR005W REV3P14284 1504 aa7.13□□□□□ -1.27
SSL1YLR005W COQ8P27697 501 aa7.13□□□□□ -1.27
SSL1YLR005W HTA1P04911 132 aaKnown RBP7.11□□□□□ -1.27
SSL1YLR005W HTA2P04912 132 aa7.11□□□□□ -1.27
SSL1YLR005W PTC3P34221 468 aaKnown RBP7.11□□□□□ -1.27
SSL1YLR005W YNL035CP53962 389 aaKnown RBP7.11□□□□□ -1.27
SSL1YLR005W GRE2Q12068 342 aaKnown RBP7.11□□□□□ -1.27
SSL1YLR005W NCR1Q12200 1170 aa7.11□□□□□ -1.27
SSL1YLR005W ABP1P15891 592 aaKnown RBP7.08□□□□□ -1.28
SSL1YLR005W BPT1P14772 1559 aa7.08□□□□□ -1.28
SSL1YLR005W ATH1P48016 1211 aa7.08□□□□□ -1.28
SSL1YLR005W BMT6Q12291 365 aa7.08□□□□□ -1.28
SSL1YLR005W SEC61P32915 480 aa7.07□□□□□ -1.28
SSL1YLR005W YEL023CP39992 682 aa7.07□□□□□ -1.28
SSL1YLR005W DAN4P47179 1161 aa7.07□□□□□ -1.28
SSL1YLR005W SSK2P53599 1579 aa7.05□□□□□ -1.28
SSL1YLR005W JIP4Q03361 876 aa7.05□□□□□ -1.28
SSL1YLR005W SIN3P22579 1536 aa7.05□□□□□ -1.28
SSL1YLR005W GUT1P32190 709 aa7.04□□□□□ -1.28
SSL1YLR005W PTC4P38089 393 aa7.04□□□□□ -1.28
SSL1YLR005W TFG1P41895 735 aaPredicted RBP7.02□□□□□ -1.29
SSL1YLR005W SSN2P38931 1420 aa6.99□□□□□ -1.29
SSL1YLR005W SAP30P38429 201 aa6.98□□□□□ -1.29
SSL1YLR005W SOL3P38858 249 aa6.98□□□□□ -1.29
SSL1YLR005W SET1P38827 1080 aaKnown RBP6.96□□□□□ -1.29
SSL1YLR005W YCF1P39109 1515 aaKnown RBP6.96□□□□□ -1.29
SSL1YLR005W NST1P53935 1240 aa6.95□□□□□ -1.3
SSL1YLR005W YDL129WQ07555 291 aa6.95□□□□□ -1.3
SSL1YLR005W PML39Q03760 334 aa6.95□□□□□ -1.3
SSL1YLR005W SKI3P17883 1432 aaKnown RBP6.94□□□□□ -1.3
SSL1YLR005W NOP53Q12080 455 aaKnown RBP6.94□□□□□ -1.3
SSL1YLR005W ESP1Q03018 1630 aa6.93□□□□□ -1.3
SSL1YLR005W MID1P41821 548 aa6.89□□□□□ -1.31
SSL1YLR005W YGR273CP53329 174 aa6.89□□□□□ -1.31
SSL1YLR005W TAF2P23255 1407 aa6.89□□□□□ -1.31
SSL1YLR005W MPH3P0CE00 602 aa6.88□□□□□ -1.31
SSL1YLR005W ILV3P39522 585 aaKnown RBP6.88□□□□□ -1.31
SSL1YLR005W YDR344CQ05510 147 aa6.88□□□□□ -1.31
SSL1YLR005W MYO2P19524 1574 aaKnown RBP6.88□□□□□ -1.31
SSL1YLR005W AI4P03878 556 aa6.86□□□□□ -1.31
SSL1YLR005W UFD4P33202 1483 aa6.85□□□□□ -1.31
SSL1YLR005W YPK9Q12697 1472 aa6.84□□□□□ -1.31
SSL1YLR005W SCC2Q04002 1493 aa6.82□□□□□ -1.32
SSL1YLR005W CHL1P22516 861 aaPredicted RBP6.82□□□□□ -1.32
SSL1YLR005W PRE3P38624 215 aa6.82□□□□□ -1.32
SSL1YLR005W ELP4Q02884 456 aaKnown RBP6.81□□□□□ -1.32
SSL1YLR005W ESC1Q03661 1658 aaKnown RBP6.8□□□□□ -1.32
SSL1YLR005W PEX29Q03370 554 aa6.8□□□□□ -1.32
SSL1YLR005W CDC25P04821 1589 aa6.79□□□□□ -1.32
SSL1YLR005W VHR2P40041 505 aa6.79□□□□□ -1.32
SSL1YLR005W MET5P47169 1442 aa6.79□□□□□ -1.32
SSL1YLR005W RPO31P04051 1460 aa6.78□□□□□ -1.32
SSL1YLR005W KEX1P09620 729 aa6.78□□□□□ -1.32
SSL1YLR005W SLI15P38283 698 aa6.78□□□□□ -1.32
SSL1YLR005W TY2B-LR1P0C2J3 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-FP0CX63 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-GR2P0CX64 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-CP25384 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-DR2Q03494 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY1B-DR1Q03855 1755 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-DR3Q07791 1770 aaKnown RBP6.76□□□□□ -1.33
SSL1YLR005W TY2B-OR1Q12113 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-DR1Q12472 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-OR2Q12501 1770 aa6.76□□□□□ -1.33
SSL1YLR005W UBP14P38237 781 aaKnown RBP6.76□□□□□ -1.33
SSL1YLR005W CHD1P32657 1468 aa6.76□□□□□ -1.33
SSL1YLR005W ARH1P48360 493 aa6.75□□□□□ -1.33
SSL1YLR005W YLR326WQ06170 240 aaKnown RBP6.75□□□□□ -1.33
SSL1YLR005W MPC54Q08550 464 aa6.74□□□□□ -1.33
SSL1YLR005W TY1B-BRQ12193 1756 aa6.73□□□□□ -1.33
SSL1YLR005W TY1B-GR3Q12316 1755 aa6.73□□□□□ -1.33
SSL1YLR005W TY1B-ORQ92393 1755 aa6.73□□□□□ -1.33
SSL1YLR005W RKR1Q04781 1562 aa6.73□□□□□ -1.33
SSL1YLR005W DMA1P38823 416 aa6.73□□□□□ -1.33
SSL1YLR005W LTE1P07866 1435 aa6.73□□□□□ -1.33
SSL1YLR005W BCK2P33306 851 aa6.72□□□□□ -1.33
SSL1YLR005W IFH1P39520 1085 aa6.72□□□□□ -1.33
SSL1YLR005W VPS70P47161 811 aa6.72□□□□□ -1.33
SSL1YLR005W DNF1P32660 1571 aa6.72□□□□□ -1.33
SSL1YLR005W RPA190P10964 1664 aaKnown RBP6.71□□□□□ -1.34
SSL1YLR005W PCS60P38137 543 aaKnown RBP RIP-Chip data6.7□□□□□ -1.34not detected
SSL1YLR005W NMA111P53920 997 aa6.7□□□□□ -1.34
SSL1YLR005W HAP5Q02516 242 aa6.7□□□□□ -1.34
SSL1YLR005W YPR148CQ06523 435 aa6.7□□□□□ -1.34
SSL1YLR005W PAN1P32521 1480 aa6.7□□□□□ -1.34
SSL1YLR005W VRP1P37370 817 aa6.69□□□□□ -1.34
SSL1YLR005W CDC73Q06697 393 aa6.69□□□□□ -1.34
SSL1YLR005W RAD54P32863 898 aa6.69□□□□□ -1.34
SSL1YLR005W DPL1Q05567 589 aa6.69□□□□□ -1.34
Retrieved 100 of 5,963 RNA–protein pairs in 32.8 ms