RNA–Protein interactions for RNA: YJR132W

NMD5, Transcript of Karyopherin, yeastyeast

Gene NMD5, Length 3,147 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NMD5YJR132W INO80P53115 1489 aa8.27□□□□□ -1.08
NMD5YJR132W SPC42P36094 363 aa8.27□□□□□ -1.09
NMD5YJR132W BRE1Q07457 700 aaKnown RBP8.26□□□□□ -1.09
NMD5YJR132W MCM1P11746 286 aa8.25□□□□□ -1.09
NMD5YJR132W NAB3P38996 802 aaKnown RBP RIP-Chip data8.25□□□□□ -1.09not detected
NMD5YJR132W RPT2P40327 437 aaKnown RBP8.24□□□□□ -1.09
NMD5YJR132W TY4A-JP47023 414 aa8.24□□□□□ -1.09
NMD5YJR132W SEC20P28791 383 aa8.24□□□□□ -1.09
NMD5YJR132W YSH1Q06224 779 aaPredicted RBP8.23□□□□□ -1.09
NMD5YJR132W NOP7P53261 605 aaKnown RBP8.23□□□□□ -1.09
NMD5YJR132W PEA2P40091 420 aa8.21□□□□□ -1.09
NMD5YJR132W SPC110P32380 944 aa8.21□□□□□ -1.1
NMD5YJR132W VPS4P52917 437 aa8.21□□□□□ -1.1
NMD5YJR132W RAD2P07276 1031 aa8.2□□□□□ -1.1
NMD5YJR132W DOS2P54858 310 aa8.2□□□□□ -1.1
NMD5YJR132W SEC9P40357 651 aa8.2□□□□□ -1.1
NMD5YJR132W HOS4P40480 1083 aa8.2□□□□□ -1.1
NMD5YJR132W NMD2P38798 1089 aaKnown RBP8.19□□□□□ -1.1
NMD5YJR132W RIX1P38883 763 aaPredicted RBP8.19□□□□□ -1.1
NMD5YJR132W ETT1Q08421 412 aaKnown RBP8.19□□□□□ -1.1
NMD5YJR132W GAL11P19659 1081 aa8.18□□□□□ -1.1
NMD5YJR132W PSK2Q08217 1101 aa8.18□□□□□ -1.1
NMD5YJR132W CDC11P32458 415 aa8.17□□□□□ -1.1
NMD5YJR132W GIR2Q03768 265 aaPredicted RBP8.16□□□□□ -1.1
NMD5YJR132W MEH1Q02205 184 aa8.15□□□□□ -1.1
NMD5YJR132W PKH1Q03407 766 aa8.15□□□□□ -1.1
NMD5YJR132W CFT2Q12102 859 aaPredicted RBP8.15□□□□□ -1.1
NMD5YJR132W HSC82P15108 705 aaKnown RBP8.14□□□□□ -1.11
NMD5YJR132W MTR4P47047 1073 aaKnown RBP8.14□□□□□ -1.11
NMD5YJR132W RPA135P22138 1203 aaKnown RBP8.14□□□□□ -1.11
NMD5YJR132W SLX8P40072 274 aa8.14□□□□□ -1.11
NMD5YJR132W TY1B-AO13527 1196 aaKnown RBP8.13□□□□□ -1.11
NMD5YJR132W MPE1P35728 441 aaKnown RBP8.13□□□□□ -1.11
NMD5YJR132W DJP1P40564 432 aa8.12□□□□□ -1.11
NMD5YJR132W LEM3P42838 414 aa8.12□□□□□ -1.11
NMD5YJR132W RAD51P25454 400 aa8.12□□□□□ -1.11
NMD5YJR132W SSA4P22202 642 aaKnown RBP8.12□□□□□ -1.11
NMD5YJR132W NNF2P53253 936 aa8.11□□□□□ -1.11
NMD5YJR132W RCF1Q03713 159 aa8.11□□□□□ -1.11
NMD5YJR132W CEF1Q03654 590 aaPredicted RBP8.1□□□□□ -1.11
NMD5YJR132W YDR341CQ05506 607 aaKnown RBP8.1□□□□□ -1.11
NMD5YJR132W GDE1Q02979 1223 aa8.09□□□□□ -1.11
NMD5YJR132W PTP3P40048 928 aa8.09□□□□□ -1.11
NMD5YJR132W CKB1P43639 278 aa8.09□□□□□ -1.11
NMD5YJR132W TAF1P46677 1066 aa8.09□□□□□ -1.11
NMD5YJR132W APL5Q08951 932 aaKnown RBP8.09□□□□□ -1.11
NMD5YJR132W CLF1Q12309 687 aaPredicted RBP8.09□□□□□ -1.11
NMD5YJR132W UBX5Q06682 500 aa8.08□□□□□ -1.12
NMD5YJR132W PAM1P37304 830 aaKnown RBP8.08□□□□□ -1.12
NMD5YJR132W NMD3P38861 518 aaKnown RBP8.08□□□□□ -1.12
NMD5YJR132W MRX12P47084 519 aa8.07□□□□□ -1.12
NMD5YJR132W PMC1P38929 1173 aaPredicted RBP8.06□□□□□ -1.12
NMD5YJR132W RRP14P36080 434 aaKnown RBP8.05□□□□□ -1.12
NMD5YJR132W MET10P39692 1035 aa8.05□□□□□ -1.12
NMD5YJR132W NST1P53935 1240 aa8.05□□□□□ -1.12
NMD5YJR132W PIM1P36775 1133 aa8.04□□□□□ -1.12
NMD5YJR132W SYH1Q02875 849 aaKnown RBP8.04□□□□□ -1.12
NMD5YJR132W SUP35P05453 685 aaKnown RBP8.03□□□□□ -1.12
NMD5YJR132W AIM20P40451 204 aa8.03□□□□□ -1.12
NMD5YJR132W ECM16Q04217 1267 aaKnown RBP8.03□□□□□ -1.12
NMD5YJR132W PET111P08468 800 aa8.03□□□□□ -1.12
NMD5YJR132W SAP190P36123 1033 aa8.03□□□□□ -1.12
NMD5YJR132W YLR257WQ06146 321 aaKnown RBP8.03□□□□□ -1.12
NMD5YJR132W POL5P39985 1022 aaKnown RBP8.02□□□□□ -1.13
NMD5YJR132W SEC27P41811 889 aaKnown RBP8.02□□□□□ -1.13
NMD5YJR132W HEL2Q05580 639 aaKnown RBP8.02□□□□□ -1.13
NMD5YJR132W YLL054CQ12244 843 aa8.02□□□□□ -1.13
NMD5YJR132W SEC3P33332 1336 aaKnown RBP8.01□□□□□ -1.13
NMD5YJR132W VPS5Q92331 675 aa8□□□□□ -1.13
NMD5YJR132W OCA5P38738 679 aa8□□□□□ -1.13
NMD5YJR132W RSC8P43609 557 aaKnown RBP8□□□□□ -1.13
NMD5YJR132W YDL121CQ07541 149 aa8□□□□□ -1.13
NMD5YJR132W RPN7Q06103 429 aaKnown RBP7.99□□□□□ -1.13
NMD5YJR132W RIX7Q07844 837 aaKnown RBP7.99□□□□□ -1.13
NMD5YJR132W ERP2P39704 215 aa7.99□□□□□ -1.13
NMD5YJR132W TOM20P35180 183 aa7.98□□□□□ -1.13
NMD5YJR132W IMH1Q06704 911 aaKnown RBP7.98□□□□□ -1.13
NMD5YJR132W FAF1P40546 346 aaPredicted RBP7.98□□□□□ -1.13
NMD5YJR132W BOI2P39969 1040 aa7.98□□□□□ -1.13
NMD5YJR132W OPI1P21957 404 aa7.97□□□□□ -1.13
NMD5YJR132W NFU1P32860 256 aa7.97□□□□□ -1.13
NMD5YJR132W VMA4P22203 233 aaKnown RBP7.96□□□□□ -1.13
NMD5YJR132W MSH3P25336 1018 aa7.96□□□□□ -1.14
NMD5YJR132W MSH4P40965 878 aaPredicted RBP7.96□□□□□ -1.14
NMD5YJR132W YAF9P53930 226 aa7.96□□□□□ -1.14
NMD5YJR132W YPR172WQ06608 200 aa7.95□□□□□ -1.14
NMD5YJR132W NPR3P38742 1146 aa7.94□□□□□ -1.14
NMD5YJR132W PES4P39684 611 aa7.94□□□□□ -1.14
NMD5YJR132W VID30P53076 958 aa7.94□□□□□ -1.14
NMD5YJR132W PSR1Q07800 427 aa7.94□□□□□ -1.14
NMD5YJR132W JIP5Q06214 492 aaPredicted RBP7.94□□□□□ -1.14
NMD5YJR132W PWP2P25635 923 aaKnown RBP7.94□□□□□ -1.14
NMD5YJR132W BLI1P35727 113 aa7.94□□□□□ -1.14
NMD5YJR132W SIC1P38634 284 aa7.94□□□□□ -1.14
NMD5YJR132W NOC2P39744 710 aaKnown RBP7.94□□□□□ -1.14
NMD5YJR132W VPS27P40343 622 aaKnown RBP7.94□□□□□ -1.14
NMD5YJR132W HSP42Q12329 375 aa7.94□□□□□ -1.14
NMD5YJR132W SNU66Q12420 587 aaPredicted RBP7.94□□□□□ -1.14
NMD5YJR132W DEP1P31385 405 aa7.93□□□□□ -1.14
NMD5YJR132W HOS2P53096 452 aaPredicted RBP7.93□□□□□ -1.14
Retrieved 100 of 5,963 RNA–protein pairs in 15.8 ms