RNA–Protein interactions for RNA: YJL129C

TRK1, Transcript of Component of the Trk1p-Trk2p potassium transport system, yeast

Gene TRK1, Length 3,708 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRK1	YJL129C	VPS4	P52917	437 aa		4.69	□□□□□ -1.66
TRK1	YJL129C	SIC1	P38634	284 aa		4.68	□□□□□ -1.66
TRK1	YJL129C	TIF4632	P39936	914 aa	Known RBP	4.68	□□□□□ -1.66
TRK1	YJL129C	LTV1	P34078	463 aa		4.68	□□□□□ -1.66
TRK1	YJL129C	SMC3	P47037	1230 aa		4.68	□□□□□ -1.66
TRK1	YJL129C	SUB1	P54000	292 aa	Known RBP	4.68	□□□□□ -1.66
TRK1	YJL129C	TOA1	P32773	286 aa		4.68	□□□□□ -1.66
TRK1	YJL129C	RRP14	P36080	434 aa	Known RBP	4.67	□□□□□ -1.66
TRK1	YJL129C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
TRK1	YJL129C	ROX1	P25042	368 aa		4.66	□□□□□ -1.66
TRK1	YJL129C	SLN1	P39928	1220 aa	Predicted RBP	4.65	□□□□□ -1.67
TRK1	YJL129C	HIF1	Q12373	385 aa		4.65	□□□□□ -1.67
TRK1	YJL129C	NHA1	Q99271	985 aa		4.65	□□□□□ -1.67
TRK1	YJL129C	TLG1	Q03322	224 aa		4.64	□□□□□ -1.67
TRK1	YJL129C	TY1B-A	O13527	1196 aa	Known RBP	4.64	□□□□□ -1.67
TRK1	YJL129C	MCM1	P11746	286 aa		4.63	□□□□□ -1.67
TRK1	YJL129C	SEC9	P40357	651 aa		4.63	□□□□□ -1.67
TRK1	YJL129C	NST1	P53935	1240 aa		4.63	□□□□□ -1.67
TRK1	YJL129C	SPB4	P25808	606 aa	Predicted RBP	4.62	□□□□□ -1.67
TRK1	YJL129C	SUP35	P05453	685 aa	Known RBP	4.62	□□□□□ -1.67
TRK1	YJL129C	DEP1	P31385	405 aa		4.62	□□□□□ -1.67
TRK1	YJL129C	RTT106	P40161	455 aa		4.62	□□□□□ -1.67
TRK1	YJL129C	BMS1	Q08965	1183 aa	Known RBP	4.62	□□□□□ -1.67
TRK1	YJL129C	RIM101	P33400	625 aa		4.61	□□□□□ -1.67
TRK1	YJL129C	GIN4	Q12263	1142 aa		4.61	□□□□□ -1.67
TRK1	YJL129C	TAN1	P53072	289 aa	Predicted RBP	4.61	□□□□□ -1.67
TRK1	YJL129C	NOP8	Q08287	484 aa	Predicted RBP	4.61	□□□□□ -1.67
TRK1	YJL129C	CLB1	P24868	471 aa		4.6	□□□□□ -1.67
TRK1	YJL129C	DSF2	P38213	736 aa		4.6	□□□□□ -1.67
TRK1	YJL129C	BDP1	P46678	594 aa		4.6	□□□□□ -1.67
TRK1	YJL129C	MED8	P38304	223 aa		4.6	□□□□□ -1.67
TRK1	YJL129C	TY1B-DR4	Q07793	1604 aa		4.6	□□□□□ -1.67
TRK1	YJL129C	ECM1	P39715	212 aa		4.59	□□□□□ -1.67
TRK1	YJL129C	LEM3	P42838	414 aa		4.59	□□□□□ -1.67
TRK1	YJL129C	RSC8	P43609	557 aa	Known RBP	4.59	□□□□□ -1.67
TRK1	YJL129C	SAP190	P36123	1033 aa		4.59	□□□□□ -1.68
TRK1	YJL129C	RSC1	P53236	928 aa		4.59	□□□□□ -1.68
TRK1	YJL129C	MGA2	P40578	1113 aa		4.58	□□□□□ -1.68
TRK1	YJL129C	PSD2	P53037	1138 aa	Known RBP	4.58	□□□□□ -1.68
TRK1	YJL129C	PUP2	P32379	260 aa		4.57	□□□□□ -1.68
TRK1	YJL129C	BYE1	P36106	594 aa		4.57	□□□□□ -1.68
TRK1	YJL129C	YLL054C	Q12244	843 aa		4.57	□□□□□ -1.68
TRK1	YJL129C	RAD2	P07276	1031 aa		4.57	□□□□□ -1.68
TRK1	YJL129C	ITC1	P53125	1264 aa		4.57	□□□□□ -1.68
TRK1	YJL129C	TPM2	P40414	161 aa		4.56	□□□□□ -1.68
TRK1	YJL129C	RAD51	P25454	400 aa		4.56	□□□□□ -1.68
TRK1	YJL129C	UTP13	Q05946	817 aa	Known RBP	4.56	□□□□□ -1.68
TRK1	YJL129C	ISW1	P38144	1129 aa		4.55	□□□□□ -1.68
TRK1	YJL129C	APL5	Q08951	932 aa	Known RBP	4.55	□□□□□ -1.68
TRK1	YJL129C	PHO87	P25360	923 aa		4.55	□□□□□ -1.68
TRK1	YJL129C	ARL1	P38116	183 aa	Known RBP	4.55	□□□□□ -1.68
TRK1	YJL129C	PSE1	P32337	1089 aa	Known RBP	4.55	□□□□□ -1.68
TRK1	YJL129C	SPT16	P32558	1035 aa	Known RBP	4.55	□□□□□ -1.68
TRK1	YJL129C	COG8	Q04632	607 aa		4.55	□□□□□ -1.68
TRK1	YJL129C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.55	□□□□□ -1.68	not detected
TRK1	YJL129C	RPC82	P32349	654 aa		4.54	□□□□□ -1.68
TRK1	YJL129C	MMS22	Q06164	1454 aa		4.54	□□□□□ -1.68
TRK1	YJL129C	DAL5	P15365	543 aa		4.54	□□□□□ -1.68
TRK1	YJL129C	LAM1	P38851	1228 aa		4.54	□□□□□ -1.68
TRK1	YJL129C	PEA2	P40091	420 aa		4.54	□□□□□ -1.68
TRK1	YJL129C	AIM20	P40451	204 aa		4.54	□□□□□ -1.68
TRK1	YJL129C	MMS1	Q06211	1407 aa		4.54	□□□□□ -1.68
TRK1	YJL129C	NOT3	P06102	836 aa	Known RBP	4.54	□□□□□ -1.68
TRK1	YJL129C	KNS1	P32350	737 aa	Predicted RBP	4.54	□□□□□ -1.68
TRK1	YJL129C	UBP10	P53874	792 aa	Predicted RBP	4.54	□□□□□ -1.68
TRK1	YJL129C	ECM5	Q03214	1411 aa		4.53	□□□□□ -1.68
TRK1	YJL129C	MDM38	Q08179	573 aa		4.53	□□□□□ -1.68
TRK1	YJL129C	TOP2	P06786	1428 aa	Known RBP	4.53	□□□□□ -1.68
TRK1	YJL129C	TAF13	P11747	167 aa		4.53	□□□□□ -1.68
TRK1	YJL129C	PCT1	P13259	424 aa		4.53	□□□□□ -1.68
TRK1	YJL129C	CEF1	Q03654	590 aa	Predicted RBP	4.53	□□□□□ -1.68
TRK1	YJL129C	MON2	P48563	1636 aa	Predicted RBP	4.53	□□□□□ -1.69
TRK1	YJL129C	SWH1	P35845	1188 aa		4.52	□□□□□ -1.69
TRK1	YJL129C	ATG36	P46983	293 aa		4.52	□□□□□ -1.69
TRK1	YJL129C	TPO2	P53283	614 aa		4.52	□□□□□ -1.69
TRK1	YJL129C	KIP3	P53086	805 aa	Known RBP	4.52	□□□□□ -1.69
TRK1	YJL129C	VPS60	Q03390	229 aa		4.52	□□□□□ -1.69
TRK1	YJL129C	ERV41	Q04651	352 aa		4.52	□□□□□ -1.69
TRK1	YJL129C	SPP41	P38904	1435 aa		4.52	□□□□□ -1.69
TRK1	YJL129C	UFD4	P33202	1483 aa		4.51	□□□□□ -1.69
TRK1	YJL129C	SPT5	P27692	1063 aa	Known RBP	4.51	□□□□□ -1.69
TRK1	YJL129C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.51	□□□□□ -1.69	not detected
TRK1	YJL129C	APL6	P46682	809 aa		4.51	□□□□□ -1.69
TRK1	YJL129C	ALD3	P54114	506 aa		4.51	□□□□□ -1.69
TRK1	YJL129C	RRP15	Q06511	250 aa	Predicted RBP	4.51	□□□□□ -1.69
TRK1	YJL129C	MSP1	P28737	362 aa		4.51	□□□□□ -1.69
TRK1	YJL129C	ZUO1	P32527	433 aa	Known RBP	4.51	□□□□□ -1.69
TRK1	YJL129C	NOP14	Q99207	810 aa	Known RBP	4.51	□□□□□ -1.69
TRK1	YJL129C	BUD4	P47136	1447 aa		4.51	□□□□□ -1.69
TRK1	YJL129C	XRN1	P22147	1528 aa	Known RBP	4.51	□□□□□ -1.69
TRK1	YJL129C	SRP54	P20424	541 aa	Known RBP	4.51	□□□□□ -1.69
TRK1	YJL129C	GDT1	P38301	280 aa	Predicted RBP	4.51	□□□□□ -1.69
TRK1	YJL129C	MPP10	P47083	593 aa	Known RBP	4.51	□□□□□ -1.69
TRK1	YJL129C	RNT1	Q02555	471 aa		4.51	□□□□□ -1.69
TRK1	YJL129C	NFI1	Q12216	726 aa		4.51	□□□□□ -1.69
TRK1	YJL129C	VPS5	Q92331	675 aa		4.51	□□□□□ -1.69
TRK1	YJL129C	VPS24	P36095	224 aa	Known RBP	4.5	□□□□□ -1.69
TRK1	YJL129C	PIM1	P36775	1133 aa		4.5	□□□□□ -1.69
TRK1	YJL129C	SIT1	P39980	628 aa		4.5	□□□□□ -1.69
TRK1	YJL129C	ESC2	Q06340	456 aa		4.5	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 50.2 ms