RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	ATF2	P53296	535 aa		8.25	□□□□□ -1.09
CAF16	YFL028C	HGH1	P48362	394 aa	Known RBP	8.24	□□□□□ -1.09
CAF16	YFL028C	GRE2	Q12068	342 aa	Known RBP	8.23	□□□□□ -1.09
CAF16	YFL028C	GUA1	P38625	525 aa	Known RBP	8.22	□□□□□ -1.09
CAF16	YFL028C	TGL3	P40308	642 aa		8.22	□□□□□ -1.09
CAF16	YFL028C	YDR090C	Q03193	310 aa		8.2	□□□□□ -1.1
CAF16	YFL028C	GUT1	P32190	709 aa		8.19	□□□□□ -1.1
CAF16	YFL028C	UBP14	P38237	781 aa	Known RBP	8.19	□□□□□ -1.1
CAF16	YFL028C	KIC1	P38692	1080 aa		8.18	□□□□□ -1.1
CAF16	YFL028C	YLR326W	Q06170	240 aa	Known RBP	8.18	□□□□□ -1.1
CAF16	YFL028C	YGR273C	P53329	174 aa		8.14	□□□□□ -1.11
CAF16	YFL028C	GYP5	Q12344	894 aa		8.13	□□□□□ -1.11
CAF16	YFL028C	RAD54	P32863	898 aa		8.12	□□□□□ -1.11
CAF16	YFL028C	SAM3	Q08986	587 aa		8.12	□□□□□ -1.11
CAF16	YFL028C	HPC2	Q01448	625 aa		8.11	□□□□□ -1.11
CAF16	YFL028C	KEX1	P09620	729 aa		8.1	□□□□□ -1.11
CAF16	YFL028C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	8.1	□□□□□ -1.11	not detected
CAF16	YFL028C	GTT3	P39996	337 aa		8.1	□□□□□ -1.11
CAF16	YFL028C	TFB3	Q03290	321 aa		8.1	□□□□□ -1.11
CAF16	YFL028C	SOL3	P38858	249 aa		8.09	□□□□□ -1.11
CAF16	YFL028C	PSE1	P32337	1089 aa	Known RBP	8.08	□□□□□ -1.12
CAF16	YFL028C	DCW1	P36091	449 aa		8.06	□□□□□ -1.12
CAF16	YFL028C	BRL1	P38770	471 aa		8.05	□□□□□ -1.12
CAF16	YFL028C	MST1	P07236	462 aa		8.02	□□□□□ -1.13
CAF16	YFL028C	SSA2	P10592	639 aa	Known RBP	8.02	□□□□□ -1.13
CAF16	YFL028C	CSN12	P47130	423 aa		8.02	□□□□□ -1.13
CAF16	YFL028C	YOL036W	Q08206	761 aa		8.02	□□□□□ -1.13
CAF16	YFL028C	PKC1	P24583	1151 aa		8.01	□□□□□ -1.13
CAF16	YFL028C	ORC6	P38826	435 aa		8.01	□□□□□ -1.13
CAF16	YFL028C	SET4	P42948	560 aa		8.01	□□□□□ -1.13
CAF16	YFL028C	TEA1	P47988	759 aa		8	□□□□□ -1.13
CAF16	YFL028C	HTA1	P04911	132 aa	Known RBP	7.99	□□□□□ -1.13
CAF16	YFL028C	HTA2	P04912	132 aa		7.99	□□□□□ -1.13
CAF16	YFL028C	NST1	P53935	1240 aa		7.98	□□□□□ -1.13
CAF16	YFL028C	ILV3	P39522	585 aa	Known RBP	7.95	□□□□□ -1.14
CAF16	YFL028C	AI4	P03878	556 aa		7.94	□□□□□ -1.14
CAF16	YFL028C	MPH3	P0CE00	602 aa		7.94	□□□□□ -1.14
CAF16	YFL028C	RGR1	P19263	1082 aa		7.94	□□□□□ -1.14
CAF16	YFL028C	YJL007C	P47080	104 aa		7.94	□□□□□ -1.14
CAF16	YFL028C	TYW1	Q08960	810 aa	Known RBP	7.94	□□□□□ -1.14
CAF16	YFL028C	KTR1	P27810	393 aa	Known RBP	7.92	□□□□□ -1.14
CAF16	YFL028C	BIM1	P40013	344 aa		7.92	□□□□□ -1.14
CAF16	YFL028C	MVP1	P40959	511 aa	Known RBP	7.91	□□□□□ -1.14
CAF16	YFL028C	CLB5	P30283	435 aa		7.9	□□□□□ -1.14
CAF16	YFL028C	WSC3	Q12215	556 aa		7.9	□□□□□ -1.14
CAF16	YFL028C	GLN1	P32288	370 aa	Known RBP	7.89	□□□□□ -1.15
CAF16	YFL028C	SLI15	P38283	698 aa		7.89	□□□□□ -1.15
CAF16	YFL028C	YEL023C	P39992	682 aa		7.89	□□□□□ -1.15
CAF16	YFL028C	ATG32	P40458	529 aa		7.89	□□□□□ -1.15
CAF16	YFL028C	MSB4	Q12317	492 aa		7.89	□□□□□ -1.15
CAF16	YFL028C	MON2	P48563	1636 aa	Predicted RBP	7.89	□□□□□ -1.15
CAF16	YFL028C	NIS1	P53939	407 aa		7.88	□□□□□ -1.15
CAF16	YFL028C	YMR196W	Q04336	1088 aa		7.88	□□□□□ -1.15
CAF16	YFL028C	DAN4	P47179	1161 aa		7.87	□□□□□ -1.15
CAF16	YFL028C	RPP1B	P10622	106 aa	Known RBP	7.86	□□□□□ -1.15
CAF16	YFL028C	RPL34B	P40525	121 aa	Known RBP	7.86	□□□□□ -1.15
CAF16	YFL028C	YPR109W	Q06104	294 aa		7.86	□□□□□ -1.15
CAF16	YFL028C	GAP1	P19145	602 aa	Predicted RBP	7.85	□□□□□ -1.15
CAF16	YFL028C	YBL036C	P38197	257 aa		7.85	□□□□□ -1.15
CAF16	YFL028C	FPK1	P53739	893 aa		7.85	□□□□□ -1.15
CAF16	YFL028C	CSC1	Q06538	782 aa		7.85	□□□□□ -1.15
CAF16	YFL028C	CDC73	Q06697	393 aa		7.84	□□□□□ -1.15
CAF16	YFL028C	HST2	P53686	357 aa		7.83	□□□□□ -1.16
CAF16	YFL028C	PKH3	Q03306	898 aa	Predicted RBP	7.83	□□□□□ -1.16
CAF16	YFL028C	SCJ1	P25303	377 aa		7.82	□□□□□ -1.16
CAF16	YFL028C	SUB2	Q07478	446 aa	Known RBP	7.82	□□□□□ -1.16
CAF16	YFL028C	MMP1	Q12372	583 aa		7.82	□□□□□ -1.16
CAF16	YFL028C	TRP5	P00931	707 aa	Known RBP	7.81	□□□□□ -1.16
CAF16	YFL028C	ERG12	P07277	443 aa		7.81	□□□□□ -1.16
CAF16	YFL028C	TIF1	P10081	395 aa	Known RBP	7.81	□□□□□ -1.16
CAF16	YFL028C	ESS1	P22696	170 aa		7.81	□□□□□ -1.16
CAF16	YFL028C	PEX21	P50091	288 aa		7.81	□□□□□ -1.16
CAF16	YFL028C	INO80	P53115	1489 aa		7.81	□□□□□ -1.16
CAF16	YFL028C	SSA1	P10591	642 aa	Known RBP	7.8	□□□□□ -1.16
CAF16	YFL028C	BIO2	P32451	375 aa		7.8	□□□□□ -1.16
CAF16	YFL028C	EAP1	P36041	632 aa	Known RBP	7.8	□□□□□ -1.16
CAF16	YFL028C	RAD59	Q12223	238 aa		7.8	□□□□□ -1.16
CAF16	YFL028C	PTC4	P38089	393 aa		7.79	□□□□□ -1.16
CAF16	YFL028C	YPR204W	Q08995	1032 aa		7.78	□□□□□ -1.16
CAF16	YFL028C	TFB4	Q12004	338 aa		7.78	□□□□□ -1.16
CAF16	YFL028C	YJU3	P28321	313 aa		7.77	□□□□□ -1.17
CAF16	YFL028C	GEF1	P37020	779 aa		7.77	□□□□□ -1.17
CAF16	YFL028C	TUM1	Q08686	304 aa	Known RBP	7.77	□□□□□ -1.17
CAF16	YFL028C	SSA4	P22202	642 aa	Known RBP	7.76	□□□□□ -1.17
CAF16	YFL028C	YNL108C	P53929	270 aa		7.76	□□□□□ -1.17
CAF16	YFL028C	ARG8	P18544	423 aa		7.75	□□□□□ -1.17
CAF16	YFL028C	RTG2	P32608	588 aa	Known RBP	7.75	□□□□□ -1.17
CAF16	YFL028C	YBL029C-A	Q3E756	94 aa		7.75	□□□□□ -1.17
CAF16	YFL028C	CPS1	P27614	576 aa		7.74	□□□□□ -1.17
CAF16	YFL028C	JIP4	Q03361	876 aa		7.74	□□□□□ -1.17
CAF16	YFL028C	SGS1	P35187	1447 aa		7.73	□□□□□ -1.17
CAF16	YFL028C	SIT4	P20604	311 aa		7.73	□□□□□ -1.17
CAF16	YFL028C	CSE4	P36012	229 aa		7.73	□□□□□ -1.17
CAF16	YFL028C	YML020W	Q03722	664 aa		7.73	□□□□□ -1.17
CAF16	YFL028C	MID1	P41821	548 aa		7.72	□□□□□ -1.17
CAF16	YFL028C	ULI1	P43604	169 aa		7.72	□□□□□ -1.17
CAF16	YFL028C	DPL1	Q05567	589 aa		7.71	□□□□□ -1.18
CAF16	YFL028C	YRR1	Q12172	810 aa		7.71	□□□□□ -1.18
CAF16	YFL028C	SLY41	P22215	453 aa		7.7	□□□□□ -1.18
CAF16	YFL028C	TIF11	P38912	153 aa	Known RBP	7.7	□□□□□ -1.18

Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms