RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	DRS1	P32892	752 aa	Known RBP	13.73	□□□□□ -0.21
CAF16	YFL028C	MTC1	P47018	478 aa	Known RBP	13.09	□□□□□ -0.31
CAF16	YFL028C	BFR2	Q06631	534 aa	Known RBP	12.11	□□□□□ -0.47
CAF16	YFL028C	TFA1	P36100	482 aa		11.69	□□□□□ -0.54
CAF16	YFL028C	DIP2	Q12220	943 aa	Predicted RBP	11.49	□□□□□ -0.57
CAF16	YFL028C	AVT3	P36062	692 aa		11.45	□□□□□ -0.58
CAF16	YFL028C	RSE1	Q04693	1361 aa	Known RBP	10.69	□□□□□ -0.7
CAF16	YFL028C	ISW2	Q08773	1120 aa		10.54	□□□□□ -0.72
CAF16	YFL028C	RQC2	Q12532	1038 aa	Known RBP	10.46	□□□□□ -0.73
CAF16	YFL028C	RPG1	P38249	964 aa	Known RBP	10.41	□□□□□ -0.74
CAF16	YFL028C	RPL17A	P05740	184 aa	Known RBP	10.29	□□□□□ -0.76
CAF16	YFL028C	RPL17B	P46990	184 aa	Known RBP	10.29	□□□□□ -0.76
CAF16	YFL028C	FAP1	P53971	965 aa		10.22	□□□□□ -0.77
CAF16	YFL028C	PRI1	P10363	409 aa		10.21	□□□□□ -0.77
CAF16	YFL028C	REB1	P21538	810 aa		10.12	□□□□□ -0.79
CAF16	YFL028C	AAD16	Q02895	342 aa		9.96	□□□□□ -0.82
CAF16	YFL028C	PTP3	P40048	928 aa		9.95	□□□□□ -0.82
CAF16	YFL028C	SPT21	P35209	758 aa		9.89	□□□□□ -0.83
CAF16	YFL028C	DMA1	P38823	416 aa		9.88	□□□□□ -0.83
CAF16	YFL028C	RIM101	P33400	625 aa		9.87	□□□□□ -0.83
CAF16	YFL028C	TSR3	Q12094	313 aa	Known RBP	9.78	□□□□□ -0.84
CAF16	YFL028C	SSP1	P38871	571 aa		9.68	□□□□□ -0.86
CAF16	YFL028C	YAH1	Q12184	172 aa	Known RBP	9.6	□□□□□ -0.87
CAF16	YFL028C	OXP1	P28273	1286 aa		9.59	□□□□□ -0.87
CAF16	YFL028C	PRY3	P47033	881 aa		9.53	□□□□□ -0.88
CAF16	YFL028C	YIL055C	P40523	627 aa	Known RBP	9.49	□□□□□ -0.89
CAF16	YFL028C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	9.49	□□□□□ -0.89	not detected
CAF16	YFL028C	YKR023W	P36119	530 aa	Known RBP	9.47	□□□□□ -0.89
CAF16	YFL028C	YLR271W	Q06152	274 aa		9.43	□□□□□ -0.9
CAF16	YFL028C	MRPL32	P25348	183 aa		9.37	□□□□□ -0.91
CAF16	YFL028C	HO	P09932	586 aa		9.33	□□□□□ -0.92
CAF16	YFL028C	RSM7	P47150	247 aa		9.31	□□□□□ -0.92
CAF16	YFL028C	MGA2	P40578	1113 aa		9.28	□□□□□ -0.92
CAF16	YFL028C	TFC8	Q12308	588 aa		9.28	□□□□□ -0.92
CAF16	YFL028C	DCD1	P06773	312 aa		9.26	□□□□□ -0.93
CAF16	YFL028C	TAF7	Q05021	590 aa		9.24	□□□□□ -0.93
CAF16	YFL028C	CST9	Q06032	482 aa		9.19	□□□□□ -0.94
CAF16	YFL028C	LEO1	P38439	464 aa		9.17	□□□□□ -0.94
CAF16	YFL028C	CDC27	P38042	758 aa		9.15	□□□□□ -0.94
CAF16	YFL028C	AI2	P03876	854 aa		9.13	□□□□□ -0.95
CAF16	YFL028C	PSD2	P53037	1138 aa	Known RBP	9.1	□□□□□ -0.95
CAF16	YFL028C	SAS10	Q12136	610 aa	Predicted RBP	9.1	□□□□□ -0.95
CAF16	YFL028C	BCH2	P36122	765 aa		9.04	□□□□□ -0.96
CAF16	YFL028C	BBC1	P47068	1157 aa		9.03	□□□□□ -0.96
CAF16	YFL028C	LEU3	P08638	886 aa		8.99	□□□□□ -0.97
CAF16	YFL028C	YCK3	P39962	524 aa		8.97	□□□□□ -0.97
CAF16	YFL028C	HAA1	Q12753	694 aa	Known RBP	8.95	□□□□□ -0.98
CAF16	YFL028C	EPS1	P40557	701 aa		8.93	□□□□□ -0.98
CAF16	YFL028C	RAM2	P29703	316 aa		8.9	□□□□□ -0.98
CAF16	YFL028C	MRM1	P25270	412 aa		8.89	□□□□□ -0.99
CAF16	YFL028C	BDF1	P35817	686 aa		8.84	□□□□□ -0.99
CAF16	YFL028C	RCR1	P38212	213 aa		8.83	□□□□□ -1
CAF16	YFL028C	SET1	P38827	1080 aa	Known RBP	8.83	□□□□□ -1
CAF16	YFL028C	SCY1	P53009	804 aa		8.81	□□□□□ -1
CAF16	YFL028C	RTG3	P38165	486 aa		8.77	□□□□□ -1.01
CAF16	YFL028C	VPS70	P47161	811 aa		8.76	□□□□□ -1.01
CAF16	YFL028C	SPB4	P25808	606 aa	Predicted RBP	8.75	□□□□□ -1.01
CAF16	YFL028C	RPN1	P38764	993 aa	Known RBP	8.73	□□□□□ -1.01
CAF16	YFL028C	YPR148C	Q06523	435 aa		8.72	□□□□□ -1.01
CAF16	YFL028C	MAP2	P38174	421 aa	Known RBP	8.71	□□□□□ -1.02
CAF16	YFL028C	CKB1	P43639	278 aa		8.71	□□□□□ -1.02
CAF16	YFL028C	MAK11	P20484	414 aa	Known RBP	8.7	□□□□□ -1.02
CAF16	YFL028C	IFH1	P39520	1085 aa		8.69	□□□□□ -1.02
CAF16	YFL028C	UBP10	P53874	792 aa	Predicted RBP	8.67	□□□□□ -1.02
CAF16	YFL028C	VPS29	P38759	282 aa		8.62	□□□□□ -1.03
CAF16	YFL028C	DMA2	P53924	522 aa		8.62	□□□□□ -1.03
CAF16	YFL028C	COQ8	P27697	501 aa		8.59	□□□□□ -1.03
CAF16	YFL028C	SLX5	P32828	619 aa	Known RBP	8.59	□□□□□ -1.03
CAF16	YFL028C	PBS2	P08018	668 aa		8.56	□□□□□ -1.04
CAF16	YFL028C	YGL015C	P33199	130 aa		8.55	□□□□□ -1.04
CAF16	YFL028C	MIF2	P35201	549 aa		8.54	□□□□□ -1.04
CAF16	YFL028C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	8.54	□□□□□ -1.04	not detected
CAF16	YFL028C	DSF2	P38213	736 aa		8.53	□□□□□ -1.04
CAF16	YFL028C	STS1	P38637	319 aa		8.5	□□□□□ -1.05
CAF16	YFL028C	YFR006W	P43590	535 aa		8.5	□□□□□ -1.05
CAF16	YFL028C	DBP1	P24784	617 aa	Known RBP	8.48	□□□□□ -1.05
CAF16	YFL028C	EDS1	P38073	919 aa		8.47	□□□□□ -1.05
CAF16	YFL028C	NOP53	Q12080	455 aa	Known RBP	8.45	□□□□□ -1.06
CAF16	YFL028C	MAM3	Q12296	706 aa		8.45	□□□□□ -1.06
CAF16	YFL028C	REF2	P42073	533 aa	Predicted RBP	8.44	□□□□□ -1.06
CAF16	YFL028C	YNR021W	P53723	404 aa	Known RBP	8.43	□□□□□ -1.06
CAF16	YFL028C	YOR238W	Q08634	303 aa		8.43	□□□□□ -1.06
CAF16	YFL028C	KIN1	P13185	1064 aa		8.41	□□□□□ -1.06
CAF16	YFL028C	IES2	P40154	320 aa		8.41	□□□□□ -1.06
CAF16	YFL028C	GLC3	P32775	704 aa		8.4	□□□□□ -1.06
CAF16	YFL028C	PTC3	P34221	468 aa	Known RBP	8.38	□□□□□ -1.07
CAF16	YFL028C	PIB1	Q06651	286 aa		8.37	□□□□□ -1.07
CAF16	YFL028C	DIT2	P21595	489 aa		8.34	□□□□□ -1.07
CAF16	YFL028C	NUP42	P49686	430 aa	Known RBP	8.34	□□□□□ -1.07
CAF16	YFL028C	ABP1	P15891	592 aa	Known RBP	8.33	□□□□□ -1.08
CAF16	YFL028C	TIF4632	P39936	914 aa	Known RBP	8.33	□□□□□ -1.08
CAF16	YFL028C	AIM7	Q12156	149 aa		8.32	□□□□□ -1.08
CAF16	YFL028C	MAK21	Q12176	1025 aa	Known RBP	8.31	□□□□□ -1.08
CAF16	YFL028C	RLF2	Q12495	606 aa		8.31	□□□□□ -1.08
CAF16	YFL028C	COX6	P00427	148 aa		8.3	□□□□□ -1.08
CAF16	YFL028C	YAP5	P40574	245 aa		8.29	□□□□□ -1.08
CAF16	YFL028C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	8.27	□□□□□ -1.09	not detected
CAF16	YFL028C	VHR2	P40041	505 aa		8.27	□□□□□ -1.09
CAF16	YFL028C	VMA1	P17255	1071 aa	Known RBP	8.26	□□□□□ -1.09
CAF16	YFL028C	ATH1	P48016	1211 aa		8.25	□□□□□ -1.09

Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms