RNA–Protein interactions for RNA: YDL216C

RRI1, Transcript of Catalytic subunit of the COP9 signalosome (CSN) complex, yeastyeast

Gene RRI1, Length 1,323 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RRI1YDL216C GRE2Q12068 342 aaKnown RBP9.9□□□□□ -0.82
RRI1YDL216C DAN4P47179 1161 aa9.89□□□□□ -0.83
RRI1YDL216C JIP4Q03361 876 aa9.89□□□□□ -0.83
RRI1YDL216C PTC3P34221 468 aaKnown RBP9.88□□□□□ -0.83
RRI1YDL216C COQ8P27697 501 aa9.87□□□□□ -0.83
RRI1YDL216C PTC4P38089 393 aa9.84□□□□□ -0.83
RRI1YDL216C YEL023CP39992 682 aa9.84□□□□□ -0.83
RRI1YDL216C TFG1P41895 735 aaPredicted RBP9.83□□□□□ -0.84
RRI1YDL216C ATH1P48016 1211 aa9.82□□□□□ -0.84
RRI1YDL216C DMA1P38823 416 aa9.82□□□□□ -0.84
RRI1YDL216C GUT1P32190 709 aa9.81□□□□□ -0.84
RRI1YDL216C YDL129WQ07555 291 aa9.75□□□□□ -0.85
RRI1YDL216C SAP30P38429 201 aa9.74□□□□□ -0.85
RRI1YDL216C NOP53Q12080 455 aaKnown RBP9.74□□□□□ -0.85
RRI1YDL216C NST1P53935 1240 aa9.72□□□□□ -0.85
RRI1YDL216C SOL3P38858 249 aa9.71□□□□□ -0.86
RRI1YDL216C PML39Q03760 334 aa9.66□□□□□ -0.86
RRI1YDL216C MPH3P0CE00 602 aa9.61□□□□□ -0.87
RRI1YDL216C SET1P38827 1080 aaKnown RBP9.61□□□□□ -0.87
RRI1YDL216C AI4P03878 556 aa9.59□□□□□ -0.87
RRI1YDL216C YGR273CP53329 174 aa9.59□□□□□ -0.87
RRI1YDL216C CHL1P22516 861 aaPredicted RBP9.58□□□□□ -0.88
RRI1YDL216C PRE3P38624 215 aa9.58□□□□□ -0.88
RRI1YDL216C ILV3P39522 585 aaKnown RBP9.57□□□□□ -0.88
RRI1YDL216C MID1P41821 548 aa9.56□□□□□ -0.88
RRI1YDL216C YDR344CQ05510 147 aa9.56□□□□□ -0.88
RRI1YDL216C ELP4Q02884 456 aaKnown RBP9.49□□□□□ -0.89
RRI1YDL216C ARH1P48360 493 aa9.48□□□□□ -0.89
RRI1YDL216C BCK2P33306 851 aa9.46□□□□□ -0.9
RRI1YDL216C PEX29Q03370 554 aa9.46□□□□□ -0.9
RRI1YDL216C KEX1P09620 729 aa9.42□□□□□ -0.9
RRI1YDL216C SLI15P38283 698 aa9.42□□□□□ -0.9
RRI1YDL216C MPC54Q08550 464 aa9.39□□□□□ -0.91
RRI1YDL216C SAS10Q12136 610 aaPredicted RBP9.39□□□□□ -0.91
RRI1YDL216C UBP14P38237 781 aaKnown RBP9.38□□□□□ -0.91
RRI1YDL216C IFH1P39520 1085 aa9.38□□□□□ -0.91
RRI1YDL216C HAP5Q02516 242 aa9.37□□□□□ -0.91
RRI1YDL216C YLR326WQ06170 240 aaKnown RBP9.37□□□□□ -0.91
RRI1YDL216C SPT23P35210 1082 aa9.36□□□□□ -0.91
RRI1YDL216C VRP1P37370 817 aa9.36□□□□□ -0.91
RRI1YDL216C VHR2P40041 505 aa9.36□□□□□ -0.91
RRI1YDL216C NMA111P53920 997 aa9.33□□□□□ -0.92
RRI1YDL216C DPL1Q05567 589 aa9.32□□□□□ -0.92
RRI1YDL216C YPR148CQ06523 435 aa9.31□□□□□ -0.92
RRI1YDL216C BNI4P53858 892 aa9.31□□□□□ -0.92
RRI1YDL216C PCS60P38137 543 aaKnown RBP RIP-Chip data9.3□□□□□ -0.92not detected
RRI1YDL216C RAD54P32863 898 aa9.28□□□□□ -0.92
RRI1YDL216C XDJ1P39102 459 aa9.28□□□□□ -0.92
RRI1YDL216C CDC73Q06697 393 aa9.28□□□□□ -0.92
RRI1YDL216C PTC2P39966 464 aaKnown RBP9.25□□□□□ -0.93
RRI1YDL216C YDR090CQ03193 310 aa9.25□□□□□ -0.93
RRI1YDL216C YML082WQ04533 649 aaKnown RBP9.24□□□□□ -0.93
RRI1YDL216C ISU2Q12056 156 aa9.24□□□□□ -0.93
RRI1YDL216C REF2P42073 533 aaPredicted RBP9.23□□□□□ -0.93
RRI1YDL216C VPS70P47161 811 aa9.23□□□□□ -0.93
RRI1YDL216C CKB1P43639 278 aa9.22□□□□□ -0.93
RRI1YDL216C KIC1P38692 1080 aa9.18□□□□□ -0.94
RRI1YDL216C RPP1BP10622 106 aaKnown RBP9.15□□□□□ -0.94
RRI1YDL216C RAM1P22007 431 aa9.13□□□□□ -0.95
RRI1YDL216C YPR015CQ12531 247 aa9.13□□□□□ -0.95
RRI1YDL216C PDR1P12383 1068 aa9.1□□□□□ -0.95
RRI1YDL216C COX6P00427 148 aa9.09□□□□□ -0.95
RRI1YDL216C GAP1P19145 602 aaPredicted RBP9.07□□□□□ -0.96
RRI1YDL216C MAK21Q12176 1025 aaKnown RBP9.07□□□□□ -0.96
RRI1YDL216C DPS1P04802 557 aaKnown RBP9.06□□□□□ -0.96
RRI1YDL216C SPB4P25808 606 aaPredicted RBP9.05□□□□□ -0.96
RRI1YDL216C CSC1Q06538 782 aa9.05□□□□□ -0.96
RRI1YDL216C ORC6P38826 435 aa9.04□□□□□ -0.96
RRI1YDL216C PEX21P50091 288 aa9.04□□□□□ -0.96
RRI1YDL216C PBS2P08018 668 aa9.03□□□□□ -0.96
RRI1YDL216C LEU3P08638 886 aa9.03□□□□□ -0.96
RRI1YDL216C YRR1Q12172 810 aa9.03□□□□□ -0.96
RRI1YDL216C TFB4Q12004 338 aa9.02□□□□□ -0.97
RRI1YDL216C DSF2P38213 736 aa8.99□□□□□ -0.97
RRI1YDL216C GYP1Q08484 637 aa8.99□□□□□ -0.97
RRI1YDL216C TUM1Q08686 304 aaKnown RBP8.98□□□□□ -0.97
RRI1YDL216C MVP1P40959 511 aaKnown RBP8.94□□□□□ -0.98
RRI1YDL216C BUD20Q08004 166 aaPredicted RBP8.94□□□□□ -0.98
RRI1YDL216C SAS4Q04003 481 aa8.93□□□□□ -0.98
RRI1YDL216C MAM3Q12296 706 aa8.93□□□□□ -0.98
RRI1YDL216C STR2P47164 639 aa8.92□□□□□ -0.98
RRI1YDL216C RGR1P19263 1082 aa8.91□□□□□ -0.98
RRI1YDL216C NUD1P32336 851 aa8.91□□□□□ -0.98
RRI1YDL216C ISM1P48526 1002 aa8.91□□□□□ -0.98
RRI1YDL216C RAS1P01119 309 aa8.89□□□□□ -0.99
RRI1YDL216C YPR109WQ06104 294 aa8.89□□□□□ -0.99
RRI1YDL216C PRT1P06103 763 aaKnown RBP8.87□□□□□ -0.99
RRI1YDL216C SDH2P21801 266 aa8.87□□□□□ -0.99
RRI1YDL216C NPL4P33755 580 aa8.85□□□□□ -0.99
RRI1YDL216C IES2P40154 320 aa8.84□□□□□ -0.99
RRI1YDL216C SRC1Q03707 834 aa8.84□□□□□ -0.99
RRI1YDL216C AMS1P22855 1083 aa8.83□□□□□ -1
RRI1YDL216C PSE1P32337 1089 aaKnown RBP8.82□□□□□ -1
RRI1YDL216C LEO1P38439 464 aa8.82□□□□□ -1
RRI1YDL216C MRF1P30775 413 aaPredicted RBP8.8□□□□□ -1
RRI1YDL216C GCD11P32481 527 aaKnown RBP8.8□□□□□ -1
RRI1YDL216C RPN1P38764 993 aaKnown RBP8.8□□□□□ -1
RRI1YDL216C TY1A-DR4O74302 440 aa8.8□□□□□ -1
RRI1YDL216C TY1A-HP0C2I4 478 aaKnown RBP8.8□□□□□ -1
RRI1YDL216C TY1A-AP0CX57 440 aa8.8□□□□□ -1
Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms