RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP1	YDL122W	PDR15	Q04182	1529 aa	Known RBP	4.39	□□□□□ -1.71
UBP1	YDL122W	TRM732	Q03496	1420 aa		4.38	□□□□□ -1.71
UBP1	YDL122W	YRF1-1	P0CX20	1796 aa		4.37	□□□□□ -1.71
UBP1	YDL122W	YRF1-5	P0CX21	1796 aa		4.37	□□□□□ -1.71
UBP1	YDL122W	YRF1-8	P0CX22	1796 aa		4.37	□□□□□ -1.71
UBP1	YDL122W	NUP170	P38181	1502 aa		4.37	□□□□□ -1.71
UBP1	YDL122W	YOR238W	Q08634	303 aa		4.36	□□□□□ -1.71
UBP1	YDL122W	TY2B-LR1	P0C2J3	1770 aa		4.36	□□□□□ -1.71
UBP1	YDL122W	TY2B-F	P0CX63	1770 aa		4.36	□□□□□ -1.71
UBP1	YDL122W	TY2B-GR2	P0CX64	1770 aa		4.36	□□□□□ -1.71
UBP1	YDL122W	TY2B-C	P25384	1770 aa		4.36	□□□□□ -1.71
UBP1	YDL122W	TY2B-DR2	Q03494	1770 aa		4.36	□□□□□ -1.71
UBP1	YDL122W	TY1B-DR1	Q03855	1755 aa		4.36	□□□□□ -1.71
UBP1	YDL122W	TY2B-DR3	Q07791	1770 aa	Known RBP	4.36	□□□□□ -1.71
UBP1	YDL122W	TY2B-OR1	Q12113	1770 aa		4.36	□□□□□ -1.71
UBP1	YDL122W	TY2B-DR1	Q12472	1770 aa		4.36	□□□□□ -1.71
UBP1	YDL122W	TY2B-OR2	Q12501	1770 aa		4.36	□□□□□ -1.71
UBP1	YDL122W	NUP159	P40477	1460 aa		4.35	□□□□□ -1.71
UBP1	YDL122W	DOP1	Q03921	1698 aa		4.34	□□□□□ -1.71
UBP1	YDL122W	TY1B-H	O13535	1793 aa		4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-DR5	P0C2I2	1755 aa		4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-DR6	P0C2I3	1755 aa		4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-LR2	P0C2I5	1755 aa		4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-PR2	P0C2J0	1756 aa		4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-JR1	P47098	1755 aa		4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-ML2	Q03434	1755 aa	Known RBP	4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-ER1	Q03612	1755 aa		4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-ML1	Q04711	1755 aa	Known RBP	4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-GR2	Q12269	1755 aa		4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-OL	Q12273	1755 aa		4.32	□□□□□ -1.72
UBP1	YDL122W	TY1B-PL	Q12414	1755 aa	Known RBP	4.32	□□□□□ -1.72
UBP1	YDL122W	TRM3	Q07527	1436 aa		4.32	□□□□□ -1.72
UBP1	YDL122W	MMS22	Q06164	1454 aa		4.32	□□□□□ -1.72
UBP1	YDL122W	TIF11	P38912	153 aa	Known RBP	4.32	□□□□□ -1.72
UBP1	YDL122W	RQC2	Q12532	1038 aa	Known RBP	4.31	□□□□□ -1.72
UBP1	YDL122W	WSC3	Q12215	556 aa		4.31	□□□□□ -1.72
UBP1	YDL122W	SPO14	P36126	1683 aa		4.3	□□□□□ -1.72
UBP1	YDL122W	RGA1	P39083	1007 aa		4.3	□□□□□ -1.72
UBP1	YDL122W	TY2B-B	Q12491	1770 aa		4.28	□□□□□ -1.72
UBP1	YDL122W	SPT21	P35209	758 aa		4.27	□□□□□ -1.73
UBP1	YDL122W	RPO21	P04050	1733 aa	Known RBP	4.27	□□□□□ -1.73
UBP1	YDL122W	BCH2	P36122	765 aa		4.26	□□□□□ -1.73
UBP1	YDL122W	DNF3	Q12674	1656 aa		4.26	□□□□□ -1.73
UBP1	YDL122W	TOP2	P06786	1428 aa	Known RBP	4.24	□□□□□ -1.73
UBP1	YDL122W	LDB19	Q12502	818 aa		4.24	□□□□□ -1.73
UBP1	YDL122W	ULS1	Q08562	1619 aa		4.22	□□□□□ -1.73
UBP1	YDL122W	SNT2	P53127	1403 aa		4.22	□□□□□ -1.73
UBP1	YDL122W	TY1B-DR3	Q99231	1755 aa		4.22	□□□□□ -1.73
UBP1	YDL122W	TFA1	P36100	482 aa		4.2	□□□□□ -1.74
UBP1	YDL122W	TY1B-JR2	P47100	1755 aa	Known RBP	4.2	□□□□□ -1.74
UBP1	YDL122W	TY1B-ER2	Q03619	1755 aa		4.2	□□□□□ -1.74
UBP1	YDL122W	TY1B-MR1	Q04214	1755 aa		4.2	□□□□□ -1.74
UBP1	YDL122W	TY1B-MR2	Q04670	1755 aa	Known RBP	4.2	□□□□□ -1.74
UBP1	YDL122W	TY1B-LR1	Q12088	1755 aa	Known RBP	4.2	□□□□□ -1.74
UBP1	YDL122W	TY1B-NL1	Q12112	1755 aa		4.2	□□□□□ -1.74
UBP1	YDL122W	TY1B-GR1	Q12141	1755 aa		4.2	□□□□□ -1.74
UBP1	YDL122W	TY1B-BL	Q12490	1755 aa		4.2	□□□□□ -1.74
UBP1	YDL122W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
UBP1	YDL122W	GLN1	P32288	370 aa	Known RBP	4.2	□□□□□ -1.74
UBP1	YDL122W	SPP41	P38904	1435 aa		4.17	□□□□□ -1.74
UBP1	YDL122W	IOC2	Q12072	812 aa		4.17	□□□□□ -1.74
UBP1	YDL122W	BUD3	P25558	1636 aa		4.17	□□□□□ -1.74
UBP1	YDL122W	BCK2	P33306	851 aa		4.16	□□□□□ -1.74
UBP1	YDL122W	GDB1	Q06625	1536 aa		4.16	□□□□□ -1.74
UBP1	YDL122W	ARO1	P08566	1588 aa	Known RBP	4.16	□□□□□ -1.74
UBP1	YDL122W	PDR10	P51533	1564 aa		4.15	□□□□□ -1.74
UBP1	YDL122W	ULI1	P43604	169 aa		4.15	□□□□□ -1.74
UBP1	YDL122W	RRD1	P40454	393 aa	Known RBP	4.15	□□□□□ -1.75
UBP1	YDL122W	VTH1	P40438	1549 aa		4.15	□□□□□ -1.75
UBP1	YDL122W	VTH2	P40890	1549 aa		4.15	□□□□□ -1.75
UBP1	YDL122W	BNR1	P40450	1375 aa		4.14	□□□□□ -1.75
UBP1	YDL122W	IQG1	Q12280	1495 aa		4.14	□□□□□ -1.75
UBP1	YDL122W	TSC11	P40061	1430 aa		4.13	□□□□□ -1.75
UBP1	YDL122W	CHC1	P22137	1653 aa	Known RBP	4.13	□□□□□ -1.75
UBP1	YDL122W	SMC4	Q12267	1418 aa		4.13	□□□□□ -1.75
UBP1	YDL122W	PDR12	Q02785	1511 aa		4.12	□□□□□ -1.75
UBP1	YDL122W	YAP5	P40574	245 aa		4.12	□□□□□ -1.75
UBP1	YDL122W	MYO4	P32492	1471 aa		4.11	□□□□□ -1.75
UBP1	YDL122W	MLP2	P40457	1679 aa		4.11	□□□□□ -1.75
UBP1	YDL122W	YAH1	Q12184	172 aa	Known RBP	4.1	□□□□□ -1.75
UBP1	YDL122W	TY3B-G	Q99315	1547 aa		4.1	□□□□□ -1.75
UBP1	YDL122W	MET10	P39692	1035 aa		4.1	□□□□□ -1.75
UBP1	YDL122W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.09	□□□□□ -1.75
UBP1	YDL122W	RIM101	P33400	625 aa		4.09	□□□□□ -1.75
UBP1	YDL122W	MAK10	Q02197	733 aa		4.08	□□□□□ -1.76
UBP1	YDL122W	USO1	P25386	1790 aa		4.08	□□□□□ -1.76
UBP1	YDL122W	STU1	P38198	1513 aa		4.07	□□□□□ -1.76
UBP1	YDL122W	GTT3	P39996	337 aa		4.07	□□□□□ -1.76
UBP1	YDL122W	YMR196W	Q04336	1088 aa		4.07	□□□□□ -1.76
UBP1	YDL122W	BDF1	P35817	686 aa		4.07	□□□□□ -1.76
UBP1	YDL122W	SSN2	P38931	1420 aa		4.06	□□□□□ -1.76
UBP1	YDL122W	SNQ2	P32568	1501 aa	Known RBP	4.06	□□□□□ -1.76
UBP1	YDL122W	YOR1	P53049	1477 aa		4.05	□□□□□ -1.76
UBP1	YDL122W	EPS1	P40557	701 aa		4.05	□□□□□ -1.76
UBP1	YDL122W	YIL055C	P40523	627 aa	Known RBP	4.04	□□□□□ -1.76
UBP1	YDL122W	SSA1	P10591	642 aa	Known RBP	4.04	□□□□□ -1.76
UBP1	YDL122W	NCR1	Q12200	1170 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms