RNA–Protein interactions for RNA: ENST00000635997.1

NEDD4L-238, Transcript of neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, human

TSL 5 BASIC

Gene NEDD4L, Length 4,402 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEDD4L-238	ENST00000635997	CARMIL2	Q6F5E8	1435 aa		20.06	■□□□□ 0.8
NEDD4L-238	ENST00000635997	PPP1R15A	O75807	674 aa	Predicted RBP	20.05	■□□□□ 0.8
NEDD4L-238	ENST00000635997	CCDC88B	A6NC98	1476 aa		20.04	■□□□□ 0.8
NEDD4L-238	ENST00000635997	CARMIL1	Q5VZK9	1371 aa		20.04	■□□□□ 0.8
NEDD4L-238	ENST00000635997	ZNF316	A6NFI3	1004 aa	Predicted RBP	20.02	■□□□□ 0.8
NEDD4L-238	ENST00000635997	FAM69C	Q0P6D2	419 aa		20	■□□□□ 0.79
NEDD4L-238	ENST00000635997	ANP32C	O43423	234 aa		19.99	■□□□□ 0.79
NEDD4L-238	ENST00000635997	CLIP1	P30622	1438 aa		19.98	■□□□□ 0.79
NEDD4L-238	ENST00000635997	CFDP1	Q9UEE9	299 aa	Predicted RBP	19.98	■□□□□ 0.79
NEDD4L-238	ENST00000635997	NES	P48681	1621 aa		19.94	■□□□□ 0.78
NEDD4L-238	ENST00000635997	SMARCA4	P51532	1647 aa		19.92	■□□□□ 0.78
NEDD4L-238	ENST00000635997	RRP7BP	Q9NSQ0	103 aa		19.91	■□□□□ 0.78
NEDD4L-238	ENST00000635997	HIRIP3	Q9BW71	556 aa	Predicted RBP	19.9	■□□□□ 0.78
NEDD4L-238	ENST00000635997	PLEKHG5	O94827	1062 aa		19.89	■□□□□ 0.77
NEDD4L-238	ENST00000635997	ABCC8	Q09428	1581 aa		19.88	■□□□□ 0.77
NEDD4L-238	ENST00000635997	KDM2A	Q9Y2K7	1162 aa		19.87	■□□□□ 0.77
NEDD4L-238	ENST00000635997	BCL11A	Q9H165	835 aa		19.86	■□□□□ 0.77
NEDD4L-238	ENST00000635997	SLC24A1	O60721	1099 aa		19.85	■□□□□ 0.77
NEDD4L-238	ENST00000635997	TONSL	Q96HA7	1378 aa		19.85	■□□□□ 0.77
NEDD4L-238	ENST00000635997	DDX10	Q13206	875 aa	Known RBP	19.84	■□□□□ 0.77
NEDD4L-238	ENST00000635997	CLSPN	Q9HAW4	1339 aa		19.82	■□□□□ 0.76
NEDD4L-238	ENST00000635997	GGT6	Q6P531	493 aa		19.82	■□□□□ 0.76
NEDD4L-238	ENST00000635997	HAP1	P54257	671 aa	Predicted RBP	19.81	■□□□□ 0.76
NEDD4L-238	ENST00000635997	CEP162	Q5TB80	1403 aa		19.81	■□□□□ 0.76
NEDD4L-238	ENST00000635997	AQR	O60306	1485 aa	Known RBP eCLIP	19.79	■□□□□ 0.76	4e-8	■■■□□ 16.6
NEDD4L-238	ENST00000635997	WIZ	O95785	1651 aa		19.79	■□□□□ 0.76
NEDD4L-238	ENST00000635997	DAXX	Q9UER7	740 aa	Predicted RBP	19.78	■□□□□ 0.76
NEDD4L-238	ENST00000635997	EFCAB2	Q5VUJ9	269 aa		19.78	■□□□□ 0.76
NEDD4L-238	ENST00000635997	PTPRG	P23470	1445 aa		19.78	■□□□□ 0.76
NEDD4L-238	ENST00000635997	MRC2	Q9UBG0	1479 aa		19.77	■□□□□ 0.76
NEDD4L-238	ENST00000635997	TOP2A	P11388	1531 aa	Known RBP	19.77	■□□□□ 0.76
NEDD4L-238	ENST00000635997		A0A0G2JS52	829 aa		19.76	■□□□□ 0.75
NEDD4L-238	ENST00000635997	SALL2	Q9Y467	1007 aa	Predicted RBP	19.73	■□□□□ 0.75
NEDD4L-238	ENST00000635997	GOLGA3	Q08378	1498 aa		19.72	■□□□□ 0.75
NEDD4L-238	ENST00000635997	EEA1	Q15075	1411 aa		19.7	■□□□□ 0.74
NEDD4L-238	ENST00000635997	RGL3	Q3MIN7	710 aa		19.69	■□□□□ 0.74
NEDD4L-238	ENST00000635997	RAD54L2	Q9Y4B4	1467 aa		19.66	■□□□□ 0.74
NEDD4L-238	ENST00000635997	BICRA	Q9NZM4	1560 aa		19.64	■□□□□ 0.74
NEDD4L-238	ENST00000635997	GAPVD1	Q14C86	1478 aa		19.64	■□□□□ 0.73
NEDD4L-238	ENST00000635997	FAM9B	Q8IZU0	186 aa		19.64	■□□□□ 0.73
NEDD4L-238	ENST00000635997	CCNB3	Q8WWL7	1395 aa		19.62	■□□□□ 0.73
NEDD4L-238	ENST00000635997	LMOD2	Q6P5Q4	547 aa		19.62	■□□□□ 0.73
NEDD4L-238	ENST00000635997	TNIK	Q9UKE5	1360 aa		19.61	■□□□□ 0.73
NEDD4L-238	ENST00000635997	HDGF	P51858	240 aa	Known RBP	19.6	■□□□□ 0.73
NEDD4L-238	ENST00000635997	ZBTB7C	A1YPR0	619 aa		19.59	■□□□□ 0.73
NEDD4L-238	ENST00000635997	SENP3-EIF4A1	A0A087X0R7	540 aa		19.58	■□□□□ 0.72
NEDD4L-238	ENST00000635997	FGD5	Q6ZNL6	1462 aa		19.56	■□□□□ 0.72
NEDD4L-238	ENST00000635997	NEFM	P07197	916 aa		19.56	■□□□□ 0.72
NEDD4L-238	ENST00000635997	IFT140	Q96RY7	1462 aa		19.55	■□□□□ 0.72
NEDD4L-238	ENST00000635997	CANX	P27824	592 aa	Known RBP	19.55	■□□□□ 0.72
NEDD4L-238	ENST00000635997	HNRNPU	Q00839	825 aa	Known RBP eCLIP	19.55	■□□□□ 0.72
NEDD4L-238	ENST00000635997	SIN3A	Q96ST3	1273 aa		19.52	■□□□□ 0.72
NEDD4L-238	ENST00000635997	GRIN2B	Q13224	1484 aa		19.5	■□□□□ 0.71
NEDD4L-238	ENST00000635997	CFTR	P13569	1480 aa		19.49	■□□□□ 0.71
NEDD4L-238	ENST00000635997	HMGXB3	Q12766	1538 aa		19.48	■□□□□ 0.71
NEDD4L-238	ENST00000635997	KIF3B	O15066	747 aa		19.48	■□□□□ 0.71
NEDD4L-238	ENST00000635997	KANK4	Q5T7N3	995 aa	Predicted RBP	19.46	■□□□□ 0.71
NEDD4L-238	ENST00000635997	MIER1	Q8N108	512 aa		19.45	■□□□□ 0.7
NEDD4L-238	ENST00000635997	KANK1	Q14678	1352 aa		19.45	■□□□□ 0.7
NEDD4L-238	ENST00000635997	SPAG9	O60271	1321 aa	Known RBP	19.45	■□□□□ 0.7
NEDD4L-238	ENST00000635997	TMC1	Q8TDI8	760 aa		19.45	■□□□□ 0.7
NEDD4L-238	ENST00000635997	FHAD1	B1AJZ9	1412 aa		19.43	■□□□□ 0.7
NEDD4L-238	ENST00000635997	EID1	Q9Y6B2	187 aa		19.43	■□□□□ 0.7
NEDD4L-238	ENST00000635997	PRG4	Q92954	1404 aa	Predicted RBP	19.42	■□□□□ 0.7
NEDD4L-238	ENST00000635997	RAPGEF2	Q9Y4G8	1499 aa		19.41	■□□□□ 0.7
NEDD4L-238	ENST00000635997	EIF4G2	P78344	907 aa	Known RBP eCLIP	19.4	■□□□□ 0.7
NEDD4L-238	ENST00000635997	MRS2	Q9HD23	443 aa		19.4	■□□□□ 0.7
NEDD4L-238	ENST00000635997	WASHC2C	Q9Y4E1	1318 aa		19.4	■□□□□ 0.7
NEDD4L-238	ENST00000635997	ZBTB47	Q9UFB7	747 aa	Predicted RBP	19.39	■□□□□ 0.69
NEDD4L-238	ENST00000635997	HNRNPM	P52272	730 aa	Known RBP eCLIP	19.38	■□□□□ 0.69	2e-6	■■■□□ 15.1
NEDD4L-238	ENST00000635997	FKBP8	Q14318	412 aa		19.37	■□□□□ 0.69
NEDD4L-238	ENST00000635997	POGK	Q9P215	609 aa		19.37	■□□□□ 0.69
NEDD4L-238	ENST00000635997	LAMC3	Q9Y6N6	1575 aa		19.36	■□□□□ 0.69
NEDD4L-238	ENST00000635997	DNAJC5	Q9H3Z4	198 aa		19.35	■□□□□ 0.69
NEDD4L-238	ENST00000635997	TOPBP1	Q92547	1522 aa		19.33	■□□□□ 0.69
NEDD4L-238	ENST00000635997	SNAPC4	Q5SXM2	1469 aa		19.31	■□□□□ 0.68
NEDD4L-238	ENST00000635997	FMN1	Q68DA7	1419 aa		19.31	■□□□□ 0.68
NEDD4L-238	ENST00000635997	FOXD1	Q16676	465 aa		19.31	■□□□□ 0.68
NEDD4L-238	ENST00000635997	NPM2	Q86SE8	214 aa	Known RBP	19.29	■□□□□ 0.68
NEDD4L-238	ENST00000635997	IGF1R	P08069	1367 aa		19.29	■□□□□ 0.68
NEDD4L-238	ENST00000635997	IRX6	P78412	446 aa	Predicted RBP	19.28	■□□□□ 0.68
NEDD4L-238	ENST00000635997	FHOD3	Q2V2M9	1422 aa		19.28	■□□□□ 0.68
NEDD4L-238	ENST00000635997	ANP32E	Q9BTT0	268 aa		19.27	■□□□□ 0.67
NEDD4L-238	ENST00000635997	CARD11	Q9BXL7	1154 aa		19.26	■□□□□ 0.67
NEDD4L-238	ENST00000635997	CCDC9	Q9Y3X0	531 aa	Known RBP	19.24	■□□□□ 0.67
NEDD4L-238	ENST00000635997	WDR43	Q15061	677 aa	Known RBP eCLIP	19.24	■□□□□ 0.67
NEDD4L-238	ENST00000635997	POLA1	P09884	1462 aa	Predicted RBP	19.24	■□□□□ 0.67
NEDD4L-238	ENST00000635997	RUSC2	Q8N2Y8	1516 aa		19.23	■□□□□ 0.67
NEDD4L-238	ENST00000635997	PHF23	Q9BUL5	403 aa	Predicted RBP	19.22	■□□□□ 0.67
NEDD4L-238	ENST00000635997	RSPH4A	Q5TD94	716 aa		19.21	■□□□□ 0.67
NEDD4L-238	ENST00000635997	PPM1G	O15355	546 aa	Predicted RBP	19.21	■□□□□ 0.67
NEDD4L-238	ENST00000635997	DCAF11	Q8TEB1	546 aa		19.2	■□□□□ 0.66
NEDD4L-238	ENST00000635997	RTL5	Q5HYW3	569 aa	Predicted RBP	19.19	■□□□□ 0.66
NEDD4L-238	ENST00000635997	VPS8	Q8N3P4	1428 aa		19.18	■□□□□ 0.66
NEDD4L-238	ENST00000635997	STK26	Q9P289	416 aa		19.17	■□□□□ 0.66
NEDD4L-238	ENST00000635997	RAPGEF3	O95398	923 aa		19.16	■□□□□ 0.66
NEDD4L-238	ENST00000635997	TNNT2	P45379	298 aa	Predicted RBP	19.16	■□□□□ 0.66
NEDD4L-238	ENST00000635997	SAFB2	Q14151	953 aa	Known RBP eCLIP	19.16	■□□□□ 0.66
NEDD4L-238	ENST00000635997	PKD2	Q13563	968 aa		19.12	■□□□□ 0.65
NEDD4L-238	ENST00000635997	MEX3C	Q5U5Q3	659 aa	Known RBP	19.12	■□□□□ 0.65

Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms