RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 CANXP27824 592 aaKnown RBP12.69□□□□□ -0.38
GGA3-223ENST00000621870 SCAF1Q9H7N4 1312 aaKnown RBP12.69□□□□□ -0.38
GGA3-223ENST00000621870 ZBTB47Q9UFB7 747 aaPredicted RBP12.68□□□□□ -0.38
GGA3-223ENST00000621870 PDS5BQ9NTI5 1447 aa12.68□□□□□ -0.38
GGA3-223ENST00000621870 HIRIP3Q9BW71 556 aaPredicted RBP12.68□□□□□ -0.38
GGA3-223ENST00000621870 C14orf37Q86TY3 774 aa12.66□□□□□ -0.38
GGA3-223ENST00000621870 SALL2Q9Y467 1007 aaPredicted RBP12.66□□□□□ -0.38
GGA3-223ENST00000621870 SOGA1O94964 1423 aa12.64□□□□□ -0.39
GGA3-223ENST00000621870 CEP164Q9UPV0 1460 aa12.64□□□□□ -0.39
GGA3-223ENST00000621870 CCDC88BA6NC98 1476 aa12.64□□□□□ -0.39
GGA3-223ENST00000621870 MLECQ14165 292 aa12.63□□□□□ -0.39
GGA3-223ENST00000621870 TNIKQ9UKE5 1360 aa12.62□□□□□ -0.39
GGA3-223ENST00000621870 FAM9BQ8IZU0 186 aa12.61□□□□□ -0.39
GGA3-223ENST00000621870 EIF4G1Q04637 1599 aaKnown RBP12.6□□□□□ -0.39
GGA3-223ENST00000621870 A0A0G2JS52 829 aa12.6□□□□□ -0.39
GGA3-223ENST00000621870 SMARCA2P51531 1590 aa12.6□□□□□ -0.39
GGA3-223ENST00000621870 CADPSQ9ULU8 1353 aa12.59□□□□□ -0.39
GGA3-223ENST00000621870 TMC1Q8TDI8 760 aa12.57□□□□□ -0.4
GGA3-223ENST00000621870 GTF3C3Q9Y5Q9 886 aa12.57□□□□□ -0.4
GGA3-223ENST00000621870 ZBTB7CA1YPR0 619 aa12.57□□□□□ -0.4
GGA3-223ENST00000621870 HNRNPUQ00839 825 aaKnown RBP eCLIP12.55□□□□□ -0.4
GGA3-223ENST00000621870 CCNB3Q8WWL7 1395 aa12.55□□□□□ -0.4
GGA3-223ENST00000621870 ACIN1Q9UKV3 1341 aaKnown RBP12.54□□□□□ -0.4
GGA3-223ENST00000621870 EIF4G2P78344 907 aaKnown RBP eCLIP12.54□□□□□ -0.4
GGA3-223ENST00000621870 GGT6Q6P531 493 aa12.53□□□□□ -0.4
GGA3-223ENST00000621870 ABCC8Q09428 1581 aa12.52□□□□□ -0.4
GGA3-223ENST00000621870 ATAD2BQ9ULI0 1458 aa12.52□□□□□ -0.41
GGA3-223ENST00000621870 FHAD1B1AJZ9 1412 aa12.5□□□□□ -0.41
GGA3-223ENST00000621870 MRS2Q9HD23 443 aa12.49□□□□□ -0.41
GGA3-223ENST00000621870 CARMIL2Q6F5E8 1435 aa12.49□□□□□ -0.41
GGA3-223ENST00000621870 HAP1P54257 671 aaPredicted RBP12.49□□□□□ -0.41
GGA3-223ENST00000621870 LMOD2Q6P5Q4 547 aa12.49□□□□□ -0.41
GGA3-223ENST00000621870 JPH4Q96JJ6 628 aa12.48□□□□□ -0.41
GGA3-223ENST00000621870 WDR43Q15061 677 aaKnown RBP eCLIP12.48□□□□□ -0.41
GGA3-223ENST00000621870 SIN3AQ96ST3 1273 aa12.48□□□□□ -0.41
GGA3-223ENST00000621870 CYB5RLQ6IPT4 315 aa12.47□□□□□ -0.41
GGA3-223ENST00000621870 CARD11Q9BXL7 1154 aa12.46□□□□□ -0.42
GGA3-223ENST00000621870 PPM1GO15355 546 aaPredicted RBP12.45□□□□□ -0.42
GGA3-223ENST00000621870 POGKQ9P215 609 aa12.45□□□□□ -0.42
GGA3-223ENST00000621870 WIZO95785 1651 aa12.45□□□□□ -0.42
GGA3-223ENST00000621870 KANK4Q5T7N3 995 aaPredicted RBP12.44□□□□□ -0.42
GGA3-223ENST00000621870 EFCAB2Q5VUJ9 269 aa12.44□□□□□ -0.42
GGA3-223ENST00000621870 SENP3-EIF4A1A0A087X0R7 540 aa12.44□□□□□ -0.42
GGA3-223ENST00000621870 NPM2Q86SE8 214 aaKnown RBP12.42□□□□□ -0.42
GGA3-223ENST00000621870 DNAJC5BQ9UF47 199 aa12.4□□□□□ -0.42
GGA3-223ENST00000621870 DCAF11Q8TEB1 546 aa12.4□□□□□ -0.42
GGA3-223ENST00000621870 SAFB2Q14151 953 aaKnown RBP eCLIP12.39□□□□□ -0.43
GGA3-223ENST00000621870 TOP2AP11388 1531 aaKnown RBP12.38□□□□□ -0.43
GGA3-223ENST00000621870 RTL5Q5HYW3 569 aaPredicted RBP12.38□□□□□ -0.43
GGA3-223ENST00000621870 OSCARQ8IYS5 282 aa12.38□□□□□ -0.43
GGA3-223ENST00000621870 FANCD2Q9BXW9 1451 aa12.38□□□□□ -0.43
GGA3-223ENST00000621870 KNSTRNQ9Y448 316 aa12.37□□□□□ -0.43
GGA3-223ENST00000621870 FOXD1Q16676 465 aa12.36□□□□□ -0.43
GGA3-223ENST00000621870 CDCA8Q53HL2 280 aa12.36□□□□□ -0.43
GGA3-223ENST00000621870 KANK1Q14678 1352 aa12.36□□□□□ -0.43
GGA3-223ENST00000621870 FKBP8Q14318 412 aa12.36□□□□□ -0.43
GGA3-223ENST00000621870 KIF3BO15066 747 aa12.35□□□□□ -0.43
GGA3-223ENST00000621870 TNNT2P45379 298 aaPredicted RBP12.35□□□□□ -0.43
GGA3-223ENST00000621870 PKD2Q13563 968 aa12.35□□□□□ -0.43
GGA3-223ENST00000621870 HNRNPMP52272 730 aaKnown RBP eCLIP12.34□□□□□ -0.43
GGA3-223ENST00000621870 MIER1Q8N108 512 aa12.34□□□□□ -0.43
GGA3-223ENST00000621870 VPS8Q8N3P4 1428 aa12.34□□□□□ -0.43
GGA3-223ENST00000621870 SOX12O15370 315 aa12.34□□□□□ -0.43
GGA3-223ENST00000621870 FHOD3Q2V2M9 1422 aa12.33□□□□□ -0.43
GGA3-223ENST00000621870 FMN1Q68DA7 1419 aa12.33□□□□□ -0.44
GGA3-223ENST00000621870 STK26Q9P289 416 aa12.33□□□□□ -0.44
GGA3-223ENST00000621870 SMARCA4P51532 1647 aa12.32□□□□□ -0.44
GGA3-223ENST00000621870 HDGFP51858 240 aaKnown RBP12.32□□□□□ -0.44
GGA3-223ENST00000621870 NEUROD2Q15784 382 aa12.32□□□□□ -0.44
GGA3-223ENST00000621870 ARXQ96QS3 562 aa12.32□□□□□ -0.44
GGA3-223ENST00000621870 CFAP53Q96M91 514 aa12.31□□□□□ -0.44
GGA3-223ENST00000621870 RAPGEF2Q9Y4G8 1499 aa12.3□□□□□ -0.44
GGA3-223ENST00000621870 SRPK2P78362 688 aaKnown RBP12.29□□□□□ -0.44
GGA3-223ENST00000621870 SPAG9O60271 1321 aaKnown RBP12.29□□□□□ -0.44
GGA3-223ENST00000621870 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.28□□□□□ -0.44
GGA3-223ENST00000621870 NUP155O75694 1391 aa12.28□□□□□ -0.44
GGA3-223ENST00000621870 ARHGAP35Q9NRY4 1499 aa12.28□□□□□ -0.44
GGA3-223ENST00000621870 PTPRGP23470 1445 aa12.28□□□□□ -0.44
GGA3-223ENST00000621870 IRX6P78412 446 aaPredicted RBP12.27□□□□□ -0.45
GGA3-223ENST00000621870 CCDC136Q96JN2 1154 aa12.26□□□□□ -0.45
GGA3-223ENST00000621870 WASHC2CQ9Y4E1 1318 aa12.25□□□□□ -0.45
GGA3-223ENST00000621870 RUSC2Q8N2Y8 1516 aa12.25□□□□□ -0.45
GGA3-223ENST00000621870 CC2D1BQ5T0F9 858 aaKnown RBP12.25□□□□□ -0.45
GGA3-223ENST00000621870 U2SURPO15042 1029 aaKnown RBP12.24□□□□□ -0.45
GGA3-223ENST00000621870 NUTM2DQ5VT03 806 aaPredicted RBP12.23□□□□□ -0.45
GGA3-223ENST00000621870 TMF1P82094 1093 aa12.23□□□□□ -0.45
GGA3-223ENST00000621870 LAS1LQ9Y4W2 734 aaKnown RBP12.23□□□□□ -0.45
GGA3-223ENST00000621870 RAD54L2Q9Y4B4 1467 aa12.23□□□□□ -0.45
GGA3-223ENST00000621870 MPHOSPH9Q99550 1183 aa12.22□□□□□ -0.45
GGA3-223ENST00000621870 ANKRD30AQ9BXX3 1397 aa12.22□□□□□ -0.45
GGA3-223ENST00000621870 NUDCQ9Y266 331 aa12.22□□□□□ -0.45
GGA3-223ENST00000621870 NCAPD3P42695 1498 aa12.21□□□□□ -0.45
GGA3-223ENST00000621870 HSP90AA1P07900 732 aaKnown RBP12.21□□□□□ -0.45
GGA3-223ENST00000621870 SETD5Q9C0A6 1442 aa12.21□□□□□ -0.45
GGA3-223ENST00000621870 MAPK8IP3Q9UPT6 1336 aa12.2□□□□□ -0.46
GGA3-223ENST00000621870 AQRO60306 1485 aaKnown RBP eCLIP12.2□□□□□ -0.461e-7■■■■□ 25.8
GGA3-223ENST00000621870 ANP32AP39687 249 aaKnown RBP12.2□□□□□ -0.46
GGA3-223ENST00000621870 FAM69CQ0P6D2 419 aa12.19□□□□□ -0.46
GGA3-223ENST00000621870 GAPVD1Q14C86 1478 aa12.19□□□□□ -0.46
GGA3-223ENST00000621870 FGD5Q6ZNL6 1462 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms