RNA–Protein interactions for RNA: ENST00000618217.4

CBWD3-213, Transcript of COBW domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene CBWD3, Length 1,611 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-213ENST00000618217 CTTNBP2Q8WZ74 1663 aa37.17■■■■□ 3.54
CBWD3-213ENST00000618217 EHMT2Q96KQ7 1210 aa37.14■■■■□ 3.54
CBWD3-213ENST00000618217 IQGAP2Q13576 1575 aa37.11■■■■□ 3.53
CBWD3-213ENST00000618217 SHROOM2Q13796 1616 aa37.11■■■■□ 3.53
CBWD3-213ENST00000618217 DNAJC5Q9H3Z4 198 aa37.07■■■■□ 3.52
CBWD3-213ENST00000618217 JPH4Q96JJ6 628 aa37.06■■■■□ 3.52
CBWD3-213ENST00000618217 UBTFP17480 764 aaKnown RBP37.04■■■■□ 3.52
CBWD3-213ENST00000618217 LOC105371045A0A1W2PR82 267 aa36.97■■■■□ 3.51
CBWD3-213ENST00000618217 UGGT2Q9NYU1 1516 aa36.95■■■■□ 3.51
CBWD3-213ENST00000618217 PRG4Q92954 1404 aaPredicted RBP36.92■■■■□ 3.5
CBWD3-213ENST00000618217 TNIKQ9UKE5 1360 aa36.9■■■■□ 3.5
CBWD3-213ENST00000618217 ARHGEF11O15085 1522 aa36.9■■■■□ 3.5
CBWD3-213ENST00000618217 ERCC6L2Q5T890 1561 aa36.9■■■■□ 3.5
CBWD3-213ENST00000618217 RIMBP3CA6NJZ7 1639 aa36.84■■■■□ 3.49
CBWD3-213ENST00000618217 RIMBP3BA6NNM3 1639 aa36.84■■■■□ 3.49
CBWD3-213ENST00000618217 RIMBP3Q9UFD9 1639 aa36.84■■■■□ 3.49
CBWD3-213ENST00000618217 DISP1Q96F81 1524 aa36.84■■■■□ 3.49
CBWD3-213ENST00000618217 CARMIL2Q6F5E8 1435 aa36.77■■■■□ 3.48
CBWD3-213ENST00000618217 KIAA0556O60303 1618 aa36.75■■■■□ 3.47
CBWD3-213ENST00000618217 SAMD9Q5K651 1589 aa36.75■■■■□ 3.47
CBWD3-213ENST00000618217 RANGAP1P46060 587 aaPredicted RBP36.72■■■■□ 3.47
CBWD3-213ENST00000618217 EFCAB5A4FU69 1503 aa36.67■■■■□ 3.46
CBWD3-213ENST00000618217 ARAP1Q96P48 1450 aa36.66■■■■□ 3.46
CBWD3-213ENST00000618217 ARHGAP35Q9NRY4 1499 aa36.62■■■■□ 3.45
CBWD3-213ENST00000618217 P3H3Q8IVL6 736 aa36.59■■■■□ 3.45
CBWD3-213ENST00000618217 CEP162Q5TB80 1403 aa36.58■■■■□ 3.45
CBWD3-213ENST00000618217 CLIP1P30622 1438 aa36.58■■■■□ 3.45
CBWD3-213ENST00000618217 PTPRGP23470 1445 aa36.55■■■■□ 3.44
CBWD3-213ENST00000618217 FHOD3Q2V2M9 1422 aa36.52■■■■□ 3.44
CBWD3-213ENST00000618217 CYB5RLQ6IPT4 315 aa36.51■■■■□ 3.43
CBWD3-213ENST00000618217 TTBK1Q5TCY1 1321 aaPredicted RBP36.45■■■■□ 3.43
CBWD3-213ENST00000618217 PLB1Q6P1J6 1458 aa36.34■■■■□ 3.41
CBWD3-213ENST00000618217 ABCA8O94911 1581 aa36.34■■■■□ 3.41
CBWD3-213ENST00000618217 UACAQ9BZF9 1416 aa36.34■■■■□ 3.41
CBWD3-213ENST00000618217 ADCY10Q96PN6 1610 aa36.31■■■■□ 3.4
CBWD3-213ENST00000618217 FMN1Q68DA7 1419 aa36.31■■■■□ 3.4
CBWD3-213ENST00000618217 UHRF1BP1LA0JNW5 1464 aa36.29■■■■□ 3.4
CBWD3-213ENST00000618217 ABCC2Q92887 1545 aa36.27■■■■□ 3.4
CBWD3-213ENST00000618217 RAPGEF6Q8TEU7 1601 aa36.24■■■■□ 3.39
CBWD3-213ENST00000618217 NUP153P49790 1475 aaKnown RBP36.14■■■■□ 3.38
CBWD3-213ENST00000618217 CASKIN1Q8WXD9 1431 aa36.13■■■■□ 3.37
CBWD3-213ENST00000618217 KDM5BQ9UGL1 1544 aa36.13■■■■□ 3.37
CBWD3-213ENST00000618217 PCF11O94913 1555 aaKnown RBP36.12■■■■□ 3.37
CBWD3-213ENST00000618217 VPS8Q8N3P4 1428 aa36.1■■■■□ 3.37
CBWD3-213ENST00000618217 FYCO1Q9BQS8 1478 aa36.06■■■■□ 3.36
CBWD3-213ENST00000618217 HECW1Q76N89 1606 aa36.06■■■■□ 3.36
CBWD3-213ENST00000618217 ATP10BO94823 1461 aa36.05■■■■□ 3.36
CBWD3-213ENST00000618217 ZCCHC11Q5TAX3 1644 aaKnown RBP36.04■■■■□ 3.36
CBWD3-213ENST00000618217 LRRIQ1Q96JM4 1722 aa36.02■■■■□ 3.36
CBWD3-213ENST00000618217 NPM1P06748 294 aaKnown RBP eCLIP36.01■■■■□ 3.35
CBWD3-213ENST00000618217 ARID3CA6NKF2 412 aa35.98■■■■□ 3.35
CBWD3-213ENST00000618217 EPRSP07814 1512 aaKnown RBP35.98■■■■□ 3.35
CBWD3-213ENST00000618217 ATP1B4Q9UN42 357 aaPredicted RBP35.97■■■■□ 3.35
CBWD3-213ENST00000618217 MAPKBP1O60336 1514 aa35.94■■■■□ 3.34
CBWD3-213ENST00000618217 CDK13Q14004 1512 aaKnown RBP35.93■■■■□ 3.34
CBWD3-213ENST00000618217 CCDC18Q5T9S5 1454 aa35.88■■■■□ 3.33
CBWD3-213ENST00000618217 ASXL2Q76L83 1435 aa35.86■■■■□ 3.33
CBWD3-213ENST00000618217 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.83■■■■□ 3.33
CBWD3-213ENST00000618217 HNRNPUL2Q1KMD3 747 aaKnown RBP35.83■■■■□ 3.33
CBWD3-213ENST00000618217 WDR7Q9Y4E6 1490 aa35.78■■■■□ 3.32
CBWD3-213ENST00000618217 CFAP43Q8NDM7 1665 aa35.74■■■■□ 3.31
CBWD3-213ENST00000618217 MAP3K1Q13233 1512 aa35.73■■■■□ 3.31
CBWD3-213ENST00000618217 PLEKHD1A6NEE1 506 aa35.73■■■■□ 3.31
CBWD3-213ENST00000618217 TIAM1Q13009 1591 aa35.72■■■■□ 3.31
CBWD3-213ENST00000618217 CDK11AQ9UQ88 783 aaPredicted RBP35.72■■■■□ 3.31
CBWD3-213ENST00000618217 MAGI3Q5TCQ9 1506 aa35.71■■■■□ 3.31
CBWD3-213ENST00000618217 ABCC10Q5T3U5 1492 aa35.67■■■■□ 3.3
CBWD3-213ENST00000618217 TROQ12816 1431 aaPredicted RBP35.65■■■■□ 3.3
CBWD3-213ENST00000618217 DIP2BQ9P265 1576 aa35.65■■■■□ 3.3
CBWD3-213ENST00000618217 KIF13AQ9H1H9 1805 aa35.62■■■■□ 3.29
CBWD3-213ENST00000618217 KCNH8Q96L42 1107 aa35.62■■■■□ 3.29
CBWD3-213ENST00000618217 GLI2P10070 1586 aa35.59■■■■□ 3.29
CBWD3-213ENST00000618217 APLP2Q06481 763 aa35.58■■■■□ 3.29
CBWD3-213ENST00000618217 LRRC9Q6ZRR7 1453 aa35.57■■■■□ 3.28
CBWD3-213ENST00000618217 MTUS2Q5JR59 1369 aa35.56■■■■□ 3.28
CBWD3-213ENST00000618217 KANK4Q5T7N3 995 aaPredicted RBP35.56■■■■□ 3.28
CBWD3-213ENST00000618217 FAM69CQ0P6D2 419 aa35.54■■■■□ 3.28
CBWD3-213ENST00000618217 EHBP1L1Q8N3D4 1523 aa35.54■■■■□ 3.28
CBWD3-213ENST00000618217 KIF14Q15058 1648 aa35.53■■■■□ 3.28
CBWD3-213ENST00000618217 ABCA9Q8IUA7 1624 aa35.5■■■■□ 3.27
CBWD3-213ENST00000618217 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.49■■■■□ 3.27
CBWD3-213ENST00000618217 TRHP20396 242 aaPredicted RBP35.49■■■■□ 3.27
CBWD3-213ENST00000618217 MAP3K4Q9Y6R4 1608 aa35.46■■■■□ 3.27
CBWD3-213ENST00000618217 TTC37Q6PGP7 1564 aa35.45■■■■□ 3.27
CBWD3-213ENST00000618217 SUPT6HQ7KZ85 1726 aaKnown RBP35.39■■■■□ 3.26
CBWD3-213ENST00000618217 CD109Q6YHK3 1445 aa35.38■■■■□ 3.25
CBWD3-213ENST00000618217 NCOA2Q15596 1464 aa35.36■■■■□ 3.25
CBWD3-213ENST00000618217 PPRC1Q5VV67 1664 aaKnown RBP35.33■■■■□ 3.25
CBWD3-213ENST00000618217 TSPOAP1O95153 1857 aa35.33■■■■□ 3.25
CBWD3-213ENST00000618217 MYO5CQ9NQX4 1742 aa35.3■■■■□ 3.24
CBWD3-213ENST00000618217 CDC42BPAQ5VT25 1732 aa35.29■■■■□ 3.24
CBWD3-213ENST00000618217 PLCH2O75038 1416 aa35.28■■■■□ 3.24
CBWD3-213ENST00000618217 GPATCH8Q9UKJ3 1502 aaKnown RBP35.27■■■■□ 3.24
CBWD3-213ENST00000618217 PPARGC1BQ86YN6 1023 aaKnown RBP35.26■■■■□ 3.24
CBWD3-213ENST00000618217 CCNB3Q8WWL7 1395 aa35.24■■■■□ 3.23
CBWD3-213ENST00000618217 CDC42BPBQ9Y5S2 1711 aa35.24■■■■□ 3.23
CBWD3-213ENST00000618217 ARAP3Q8WWN8 1544 aa35.24■■■■□ 3.23
CBWD3-213ENST00000618217 PREX2Q70Z35 1606 aa35.24■■■■□ 3.23
CBWD3-213ENST00000618217 TEX14Q8IWB6 1497 aa35.17■■■■□ 3.22
CBWD3-213ENST00000618217 PHLDB1Q86UU1 1377 aa35.17■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms